Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107421684-108565656

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478 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna2d2 9 107399749 to 107529346 129597 + protein coding gene calcium channel, voltage-dependent, alpha 2/delta subunit 2
Gm17141 9 107423857 to 107430567 6710 - antisense lncRNA gene predicted gene 17141
Gm17118 9 107443950 to 107445031 1081 - antisense lncRNA gene predicted gene 17118
D9Dcr100 9 107451408 to 107451503 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 100
Gm34037 9 107484062 to 107490794 6732 - lncRNA gene predicted gene, 34037
Cpgi22287 9 107484441 to 107484678 237 CpG island CpG island 22287
Tssr91390 9 107490759 to 107490760 1 - TSS region transcription start site region 91390
Tssr86977 9 107505587 to 107505609 22 + TSS region transcription start site region 86977
Tssr86978 9 107505884 to 107505892 8 + TSS region transcription start site region 86978
Tssr91391 9 107517335 to 107517338 3 - TSS region transcription start site region 91391
Cpgi22288 9 107526447 to 107527518 1071 CpG island CpG island 22288
Cpgi22289 9 107533788 to 107535380 1592 CpG island CpG island 22289
Tmem115 9 107533945 to 107538656 4711 + protein coding gene transmembrane protein 115
Tssr86979 9 107534000 to 107534024 24 + TSS region transcription start site region 86979
Tssr86980 9 107534030 to 107534136 106 + TSS region transcription start site region 86980
Cyb561d2 9 107539011 to 107542188 3177 - protein coding gene cytochrome b-561 domain containing 2
Tssr86981 9 107539548 to 107539550 2 + TSS region transcription start site region 86981
Cpgi22290 9 107541503 to 107542524 1021 CpG island CpG island 22290
Tssr91392 9 107541816 to 107541830 14 - TSS region transcription start site region 91392
Tssr91393 9 107542110 to 107542155 45 - TSS region transcription start site region 91393
Tssr86982 9 107542218 to 107542258 40 + TSS region transcription start site region 86982
Nprl2 9 107542226 to 107545706 3480 + protein coding gene NPR2 like, GATOR1 complex subunit
Cpgi22291 9 107547106 to 107547459 353 CpG island CpG island 22291
Tssr86983 9 107547288 to 107547379 91 + TSS region transcription start site region 86983
Zmynd10 9 107547298 to 107551319 4021 + protein coding gene zinc finger, MYND domain containing 10
Gm34106 9 107547827 to 107550781 2954 - antisense lncRNA gene predicted gene, 34106
Tssr86984 9 107550770 to 107550798 28 + TSS region transcription start site region 86984
Tssr91394 9 107550835 to 107550837 2 - TSS region transcription start site region 91394
Cpgi22292 9 107550939 to 107552050 1111 CpG island CpG island 22292
Tssr86985 9 107551419 to 107551440 21 + TSS region transcription start site region 86985
Tssr86986 9 107551516 to 107551575 59 + TSS region transcription start site region 86986
Rassf1 9 107551555 to 107562267 10712 + protein coding gene Ras association (RalGDS/AF-6) domain family member 1
Cpgi22293 9 107553878 to 107555434 1556 CpG island CpG island 22293
Tssr91395 9 107554393 to 107554415 22 - TSS region transcription start site region 91395
Tssr86987 9 107554577 to 107554591 14 + TSS region transcription start site region 86987
Tssr86988 9 107554606 to 107554631 25 + TSS region transcription start site region 86988
Tssr86989 9 107554633 to 107554651 18 + TSS region transcription start site region 86989
Tssr86990 9 107554671 to 107554684 13 + TSS region transcription start site region 86990
Tssr86991 9 107554685 to 107554763 78 + TSS region transcription start site region 86991
Tssr86992 9 107554795 to 107554809 14 + TSS region transcription start site region 86992
Tssr86993 9 107554817 to 107554831 14 + TSS region transcription start site region 86993
Gm9917 9 107558809 to 107568415 9606 - antisense lncRNA gene predicted gene 9917
Cpgi22294 9 107562887 to 107563624 737 CpG island CpG island 22294
Tssr86994 9 107563246 to 107563285 39 + TSS region transcription start site region 86994
Tusc2 9 107563255 to 107566108 2853 + protein coding gene tumor suppressor 2, mitochondrial calcium regulator
Tssr86995 9 107563286 to 107563297 11 + TSS region transcription start site region 86995
Tssr91396 9 107566867 to 107566897 30 - TSS region transcription start site region 91396
Tssr91397 9 107566937 to 107566984 47 - TSS region transcription start site region 91397
Tssr86996 9 107567903 to 107567941 38 + TSS region transcription start site region 86996
Hyal2 9 107567945 to 107572779 4834 + protein coding gene hyaluronoglucosaminidase 2
Cpgi22295 9 107568975 to 107569705 730 CpG island CpG island 22295
Tssr86997 9 107569112 to 107569135 23 + TSS region transcription start site region 86997
Tssr86998 9 107569138 to 107569155 17 + TSS region transcription start site region 86998
Tssr86999 9 107569156 to 107569184 28 + TSS region transcription start site region 86999
Gm16343 9 107575820 to 107587425 11605 - antisense lncRNA gene predicted gene 16343
Tssr87000 9 107575906 to 107575917 11 + TSS region transcription start site region 87000
Tssr91398 9 107576817 to 107576840 23 - TSS region transcription start site region 91398
Tssr87001 9 107576915 to 107576976 61 + TSS region transcription start site region 87001
Hyal1 9 107576952 to 107580137 3185 + protein coding gene hyaluronoglucosaminidase 1
Tssr87002 9 107579900 to 107579912 12 + TSS region transcription start site region 87002
Naa80 9 107580170 to 107584048 3878 + protein coding gene N(alpha)-acetyltransferase 80, NatH catalytic subunit
Cpgi22296 9 107580607 to 107581088 481 CpG island CpG island 22296
Tssr87003 9 107580647 to 107580699 52 + TSS region transcription start site region 87003
Tssr87004 9 107580721 to 107580732 11 + TSS region transcription start site region 87004
Tssr87005 9 107580736 to 107580744 8 + TSS region transcription start site region 87005
Tssr87006 9 107580746 to 107580833 87 + TSS region transcription start site region 87006
Hyal3 9 107581296 to 107587359 6063 + protein coding gene hyaluronoglucosaminidase 3
Tssr87007 9 107581300 to 107581312 12 + TSS region transcription start site region 87007
Cpgi22297 9 107587418 to 107588288 870 CpG island CpG island 22297
Tssr87008 9 107587642 to 107587656 14 + TSS region transcription start site region 87008
Tssr87009 9 107587673 to 107587680 7 + TSS region transcription start site region 87009
Tssr87010 9 107587711 to 107587746 35 + TSS region transcription start site region 87010
Ifrd2 9 107587718 to 107593038 5320 + protein coding gene interferon-related developmental regulator 2
Tssr87011 9 107587757 to 107587801 44 + TSS region transcription start site region 87011
Tssr87012 9 107587866 to 107587889 23 + TSS region transcription start site region 87012
Tssr87013 9 107590924 to 107590945 21 + TSS region transcription start site region 87013
Tssr87014 9 107590946 to 107590976 30 + TSS region transcription start site region 87014
Lsmem2 9 107593841 to 107597075 3234 - protein coding gene leucine-rich single-pass membrane protein 2
Gm38150 9 107594440 to 107594891 451 + lincRNA gene predicted gene, 38150
Tssr91399 9 107594469 to 107594477 8 - TSS region transcription start site region 91399
Tssr91400 9 107597022 to 107597082 60 - TSS region transcription start site region 91400
Sema3b 9 107597674 to 107609229 11555 - protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Cpgi22298 9 107598650 to 107599285 635 CpG island CpG island 22298
Cpgi22299 9 107599930 to 107600160 230 CpG island CpG island 22299
Tssr91401 9 107605103 to 107605122 19 - TSS region transcription start site region 91401
Tssr91402 9 107605130 to 107605173 43 - TSS region transcription start site region 91402
Tssr91403 9 107605247 to 107605259 12 - TSS region transcription start site region 91403
Tssr91404 9 107605263 to 107605283 20 - TSS region transcription start site region 91404
Tssr91405 9 107605295 to 107605331 36 - TSS region transcription start site region 91405
Tssr91406 9 107606673 to 107606688 15 - TSS region transcription start site region 91406
Tssr87015 9 107606778 to 107606811 33 + TSS region transcription start site region 87015
Tssr91407 9 107609182 to 107609214 32 - TSS region transcription start site region 91407
Tssr91408 9 107609215 to 107609246 31 - TSS region transcription start site region 91408
Cpgi22300 9 107612322 to 107613171 849 CpG island CpG island 22300
Gnai2 9 107614125 to 107635367 21242 - protein coding gene guanine nucleotide binding protein (G protein), alpha inhibiting 2
Tssr87016 9 107614426 to 107614444 18 + TSS region transcription start site region 87016
Tssr91409 9 107614466 to 107614532 66 - TSS region transcription start site region 91409
Tssr87017 9 107614540 to 107614645 105 + TSS region transcription start site region 87017
Tssr91410 9 107614615 to 107614679 64 - TSS region transcription start site region 91410
Tssr87018 9 107614656 to 107614675 19 + TSS region transcription start site region 87018
Tssr91411 9 107614680 to 107614723 43 - TSS region transcription start site region 91411
Tssr3009 9 107614723 to 107614768 45 - TSS region transcription start site region 3009
Tssr91412 9 107614776 to 107614794 18 - TSS region transcription start site region 91412
Tssr91413 9 107614847 to 107614858 11 - TSS region transcription start site region 91413
Tssr91414 9 107614890 to 107614903 13 - TSS region transcription start site region 91414
Tssr91415 9 107614930 to 107614956 26 - TSS region transcription start site region 91415
Tssr91416 9 107614974 to 107614994 20 - TSS region transcription start site region 91416
Tssr91417 9 107615020 to 107615060 40 - TSS region transcription start site region 91417
Tssr91418 9 107615078 to 107615084 6 - TSS region transcription start site region 91418
Tssr91419 9 107615090 to 107615101 11 - TSS region transcription start site region 91419
Tssr91420 9 107615798 to 107615829 31 - TSS region transcription start site region 91420
Tssr91421 9 107616179 to 107616218 39 - TSS region transcription start site region 91421
Tssr91422 9 107616238 to 107616268 30 - TSS region transcription start site region 91422
Tssr91423 9 107616269 to 107616317 48 - TSS region transcription start site region 91423
Tssr91424 9 107616468 to 107616492 24 - TSS region transcription start site region 91424
Tssr91425 9 107619732 to 107619815 83 - TSS region transcription start site region 91425
D9Mit278 9 107621169 to 107621292 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 278
D9Mit278.2 9 107621219 to 107621328 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 278.2
D9Dcr101 9 107626418 to 107626524 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 101
Gm19721 9 107630776 to 107632539 1763 - unclassified non-coding RNA gene predicted gene, 19721
Cpgi22301 9 107633030 to 107633935 905 CpG island CpG island 22301
Cpgi22302 9 107634917 to 107635636 719 CpG island CpG island 22302
Tssr87019 9 107635123 to 107635146 23 + TSS region transcription start site region 87019
Tssr91426 9 107635330 to 107635353 23 - TSS region transcription start site region 91426
Tssr91427 9 107635380 to 107635385 5 - TSS region transcription start site region 91427
Cpgi22303 9 107644538 to 107644993 455 CpG island CpG island 22303
Slc38a3 9 107651154 to 107668968 17814 - protein coding gene solute carrier family 38, member 3
Tssr91428 9 107651663 to 107651684 21 - TSS region transcription start site region 91428
Tssr91429 9 107651699 to 107651709 10 - TSS region transcription start site region 91429
Tssr87020 9 107652137 to 107652156 19 + TSS region transcription start site region 87020
Tssr91430 9 107652223 to 107652234 11 - TSS region transcription start site region 91430
Tssr91431 9 107655051 to 107655070 19 - TSS region transcription start site region 91431
Tssr91432 9 107655095 to 107655116 21 - TSS region transcription start site region 91432
Tssr91433 9 107655121 to 107655130 9 - TSS region transcription start site region 91433
Tssr91434 9 107655154 to 107655170 16 - TSS region transcription start site region 91434
Tssr91435 9 107655300 to 107655343 43 - TSS region transcription start site region 91435
Tssr91436 9 107655350 to 107655385 35 - TSS region transcription start site region 91436
Tssr91437 9 107655664 to 107655679 15 - TSS region transcription start site region 91437
Tssr87021 9 107655934 to 107655945 11 + TSS region transcription start site region 87021
Tssr91438 9 107656129 to 107656143 14 - TSS region transcription start site region 91438
Tssr91439 9 107656149 to 107656165 16 - TSS region transcription start site region 91439
Tssr91440 9 107656173 to 107656184 11 - TSS region transcription start site region 91440
Tssr91441 9 107656621 to 107656639 18 - TSS region transcription start site region 91441
Tssr91442 9 107656675 to 107656692 17 - TSS region transcription start site region 91442
Tssr91443 9 107657846 to 107657860 14 - TSS region transcription start site region 91443
Tssr91444 9 107657871 to 107657886 15 - TSS region transcription start site region 91444
Tssr91445 9 107657895 to 107657906 11 - TSS region transcription start site region 91445
Tssr91446 9 107658671 to 107658683 12 - TSS region transcription start site region 91446
Tssr91447 9 107658968 to 107658985 17 - TSS region transcription start site region 91447
Tssr91448 9 107662019 to 107662030 11 - TSS region transcription start site region 91448
Tssr91449 9 107664198 to 107664210 12 - TSS region transcription start site region 91449
Tssr91450 9 107664333 to 107664351 18 - TSS region transcription start site region 91450
Cpgi22304 9 107666507 to 107667499 992 CpG island CpG island 22304
Tssr91451 9 107667256 to 107667264 8 - TSS region transcription start site region 91451
Tssr91452 9 107667375 to 107667390 15 - TSS region transcription start site region 91452
Tssr91453 9 107668967 to 107668995 28 - TSS region transcription start site region 91453
Tssr91454 9 107668999 to 107669020 21 - TSS region transcription start site region 91454
D9Dcr102 9 107669556 to 107669647 91 DNA segment DNA segment, Chr 9, Derry C. Roopenian 102
Gnat1 9 107674474 to 107679592 5118 - protein coding gene guanine nucleotide binding protein, alpha transducing 1
Tssr87022 9 107674857 to 107674878 21 + TSS region transcription start site region 87022
Tssr91455 9 107674931 to 107674937 6 - TSS region transcription start site region 91455
Tssr91456 9 107675189 to 107675196 7 - TSS region transcription start site region 91456
Tssr91457 9 107675290 to 107675297 7 - TSS region transcription start site region 91457
Tssr91458 9 107675445 to 107675454 9 - TSS region transcription start site region 91458
Tssr91459 9 107675561 to 107675567 6 - TSS region transcription start site region 91459
Tssr91460 9 107675652 to 107675673 21 - TSS region transcription start site region 91460
Cpgi22305 9 107675757 to 107677507 1750 CpG island CpG island 22305
Tssr87023 9 107675780 to 107675794 14 + TSS region transcription start site region 87023
Tssr91461 9 107675992 to 107676000 8 - TSS region transcription start site region 91461
Tssr87024 9 107676042 to 107676051 9 + TSS region transcription start site region 87024
Tssr91462 9 107676073 to 107676078 5 - TSS region transcription start site region 91462
Tssr91463 9 107676402 to 107676413 11 - TSS region transcription start site region 91463
Tssr91464 9 107676432 to 107676448 16 - TSS region transcription start site region 91464
Tssr91465 9 107676596 to 107676615 19 - TSS region transcription start site region 91465
Tssr91466 9 107679624 to 107679640 16 - TSS region transcription start site region 91466
A930036K24Rik 9 107680082 to 107681281 1199 + unclassified gene RIKEN cDNA A930036K24 gene
Sema3f 9 107681500 to 107710475 28975 - protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Cpgi22306 9 107685335 to 107685596 261 CpG island CpG island 22306
Cpgi22307 9 107690499 to 107690650 151 CpG island CpG island 22307
Cpgi22308 9 107708913 to 107710831 1918 CpG island CpG island 22308
Tssr91467 9 107709643 to 107709681 38 - TSS region transcription start site region 91467
Tssr91468 9 107709896 to 107709994 98 - TSS region transcription start site region 91468
Tssr87025 9 107729518 to 107729527 9 + TSS region transcription start site region 87025
Gm34605 9 107729972 to 107736933 6961 + lncRNA gene predicted gene, 34605
Rbm5 9 107740495 to 107771009 30514 - protein coding gene RNA binding motif protein 5
Tssr91469 9 107757532 to 107757535 3 - TSS region transcription start site region 91469
Gm37850 9 107762808 to 107763587 779 + antisense lncRNA gene predicted gene, 37850
Tssr91470 9 107769622 to 107769626 4 - TSS region transcription start site region 91470
Cpgi22309 9 107770308 to 107771264 956 CpG island CpG island 22309
Tssr91471 9 107770951 to 107771007 56 - TSS region transcription start site region 91471
Rbm6 9 107773559 to 107872822 99263 - protein coding gene RNA binding motif protein 6
Tssr91472 9 107815960 to 107815965 5 - TSS region transcription start site region 91472
Tssr91473 9 107818064 to 107818080 16 - TSS region transcription start site region 91473
Gm37436 9 107818928 to 107820012 1084 - unclassified gene predicted gene, 37436
D9Ertd292e 9 107841883 to 107842127 244 DNA segment DNA segment, Chr 9, ERATO Doi 292, expressed
Cpgi22310 9 107872090 to 107873164 1074 CpG island CpG island 22310
Tssr91474 9 107872403 to 107872422 19 - TSS region transcription start site region 91474
4930506F14Rik 9 107872460 to 107873238 778 unclassified gene RIKEN cDNA 4930506F14 gene
Tssr91475 9 107872687 to 107872747 60 - TSS region transcription start site region 91475
Tssr91476 9 107872748 to 107872781 33 - TSS region transcription start site region 91476