Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107298857-107555567

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cish 9 107296659 to 107302784 6125 + protein coding gene cytokine inducible SH2-containing protein
Tssr86958 9 107299152 to 107299156 4 + TSS region transcription start site region 86958
Tssr86959 9 107299351 to 107299365 14 + TSS region transcription start site region 86959
Tssr86960 9 107299411 to 107299425 14 + TSS region transcription start site region 86960
Tssr86961 9 107299912 to 107299921 9 + TSS region transcription start site region 86961
Tssr86962 9 107299945 to 107299955 10 + TSS region transcription start site region 86962
Tssr86963 9 107299971 to 107299982 11 + TSS region transcription start site region 86963
Tssr86964 9 107300000 to 107300019 19 + TSS region transcription start site region 86964
Tssr86965 9 107300020 to 107300031 11 + TSS region transcription start site region 86965
Tssr86966 9 107300040 to 107300047 7 + TSS region transcription start site region 86966
Tssr86967 9 107300093 to 107300104 11 + TSS region transcription start site region 86967
Gm17041 9 107300380 to 107301838 1458 - antisense lncRNA gene predicted gene 17041
Tssr91378 9 107300662 to 107300685 23 - TSS region transcription start site region 91378
Tssr86968 9 107301838 to 107301843 5 + TSS region transcription start site region 86968
Tssr91379 9 107306163 to 107306190 27 - TSS region transcription start site region 91379
Tssr91380 9 107307550 to 107307570 20 - TSS region transcription start site region 91380
Tssr86969 9 107307708 to 107307743 35 + TSS region transcription start site region 86969
Tssr91381 9 107313059 to 107313077 18 - TSS region transcription start site region 91381
Tssr91382 9 107313310 to 107313348 38 - TSS region transcription start site region 91382
Tssr91383 9 107313371 to 107313379 8 - TSS region transcription start site region 91383
Tssr86970 9 107313521 to 107313534 13 + TSS region transcription start site region 86970
Hemk1 9 107327084 to 107338350 11266 - protein coding gene HemK methyltransferase family member 1
Tssr91384 9 107333813 to 107333828 15 - TSS region transcription start site region 91384
Tssr91385 9 107334315 to 107334322 7 - TSS region transcription start site region 91385
Tssr91386 9 107334570 to 107334583 13 - TSS region transcription start site region 91386
Tssr91387 9 107334605 to 107334618 13 - TSS region transcription start site region 91387
Tssr86971 9 107334760 to 107334769 9 + TSS region transcription start site region 86971
Tssr86972 9 107335736 to 107335760 24 + TSS region transcription start site region 86972
Tssr91388 9 107337995 to 107337999 4 - TSS region transcription start site region 91388
Cpgi22283 9 107338065 to 107338476 411 CpG island CpG island 22283
Tssr3008 9 107338298 to 107338302 4 - TSS region transcription start site region 3008
Tssr91389 9 107338305 to 107338351 46 - TSS region transcription start site region 91389
Cpgi22284 9 107340413 to 107340936 523 CpG island CpG island 22284
Tssr86973 9 107340593 to 107340648 55 + TSS region transcription start site region 86973
6430571L13Rik 9 107340640 to 107349683 9043 + protein coding gene RIKEN cDNA 6430571L13 gene
4930429P21Rik 9 107351276 to 107353986 2710 - lincRNA gene RIKEN cDNA 4930429P21 gene
D9Dcr98 9 107354092 to 107354187 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 98
Cpgi22285 9 107377927 to 107378633 706 CpG island CpG island 22285
D9Dcr99 9 107392041 to 107392147 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 99
Cpgi22286 9 107399170 to 107400969 1799 CpG island CpG island 22286
Cacna2d2 9 107399749 to 107529346 129597 + protein coding gene calcium channel, voltage-dependent, alpha 2/delta subunit 2
Tssr86974 9 107399796 to 107399849 53 + TSS region transcription start site region 86974
Tssr86975 9 107399858 to 107399872 14 + TSS region transcription start site region 86975
Tssr86976 9 107400043 to 107400064 21 + TSS region transcription start site region 86976
Gm17141 9 107423857 to 107430567 6710 - antisense lncRNA gene predicted gene 17141
Gm17118 9 107443950 to 107445031 1081 - antisense lncRNA gene predicted gene 17118
D9Dcr100 9 107451408 to 107451503 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 100
Gm34037 9 107484062 to 107490794 6732 - lncRNA gene predicted gene, 34037
Cpgi22287 9 107484441 to 107484678 237 CpG island CpG island 22287
Tssr91390 9 107490759 to 107490760 1 - TSS region transcription start site region 91390
Tssr86977 9 107505587 to 107505609 22 + TSS region transcription start site region 86977
Tssr86978 9 107505884 to 107505892 8 + TSS region transcription start site region 86978
Tssr91391 9 107517335 to 107517338 3 - TSS region transcription start site region 91391
Cpgi22288 9 107526447 to 107527518 1071 CpG island CpG island 22288
Cpgi22289 9 107533788 to 107535380 1592 CpG island CpG island 22289
Tmem115 9 107533945 to 107538656 4711 + protein coding gene transmembrane protein 115
Tssr86979 9 107534000 to 107534024 24 + TSS region transcription start site region 86979
Tssr86980 9 107534030 to 107534136 106 + TSS region transcription start site region 86980
Cyb561d2 9 107539011 to 107542188 3177 - protein coding gene cytochrome b-561 domain containing 2
Tssr86981 9 107539548 to 107539550 2 + TSS region transcription start site region 86981
Cpgi22290 9 107541503 to 107542524 1021 CpG island CpG island 22290
Tssr91392 9 107541816 to 107541830 14 - TSS region transcription start site region 91392
Tssr91393 9 107542110 to 107542155 45 - TSS region transcription start site region 91393
Tssr86982 9 107542218 to 107542258 40 + TSS region transcription start site region 86982
Nprl2 9 107542226 to 107545706 3480 + protein coding gene NPR2 like, GATOR1 complex subunit
Cpgi22291 9 107547106 to 107547459 353 CpG island CpG island 22291
Tssr86983 9 107547288 to 107547379 91 + TSS region transcription start site region 86983
Zmynd10 9 107547298 to 107551319 4021 + protein coding gene zinc finger, MYND domain containing 10
Gm34106 9 107547827 to 107550781 2954 - antisense lncRNA gene predicted gene, 34106
Tssr86984 9 107550770 to 107550798 28 + TSS region transcription start site region 86984
Tssr91394 9 107550835 to 107550837 2 - TSS region transcription start site region 91394
Cpgi22292 9 107550939 to 107552050 1111 CpG island CpG island 22292
Tssr86985 9 107551419 to 107551440 21 + TSS region transcription start site region 86985
Tssr86986 9 107551516 to 107551575 59 + TSS region transcription start site region 86986
Rassf1 9 107551555 to 107562267 10712 + protein coding gene Ras association (RalGDS/AF-6) domain family member 1
Cpgi22293 9 107553878 to 107555434 1556 CpG island CpG island 22293
Tssr91395 9 107554393 to 107554415 22 - TSS region transcription start site region 91395
Tssr86987 9 107554577 to 107554591 14 + TSS region transcription start site region 86987
Tssr86988 9 107554606 to 107554631 25 + TSS region transcription start site region 86988
Tssr86989 9 107554633 to 107554651 18 + TSS region transcription start site region 86989
Tssr86990 9 107554671 to 107554684 13 + TSS region transcription start site region 86990
Tssr86991 9 107554685 to 107554763 78 + TSS region transcription start site region 86991
Tssr86992 9 107554795 to 107554809 14 + TSS region transcription start site region 86992
Tssr86993 9 107554817 to 107554831 14 + TSS region transcription start site region 86993