Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107289858-107509872

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapkapk3 9 107254927 to 107289877 34950 - protein coding gene mitogen-activated protein kinase-activated protein kinase 3
Cpgi22281 9 107288982 to 107290005 1023 CpG island CpG island 22281
Tssr91373 9 107289847 to 107289866 19 - TSS region transcription start site region 91373
Tssr86949 9 107289960 to 107289978 18 + TSS region transcription start site region 86949
Gm17040 9 107292437 to 107293323 886 - pseudogene predicted gene 17040
Tssr91374 9 107295605 to 107295642 37 - TSS region transcription start site region 91374
Tssr91375 9 107295756 to 107295763 7 - TSS region transcription start site region 91375
Tssr86950 9 107295899 to 107295910 11 + TSS region transcription start site region 86950
Tssr86951 9 107295928 to 107295935 7 + TSS region transcription start site region 86951
Tssr86952 9 107296210 to 107296221 11 + TSS region transcription start site region 86952
Cpgi22282 9 107296221 to 107297353 1132 CpG island CpG island 22282
Tssr86953 9 107296223 to 107296235 12 + TSS region transcription start site region 86953
Tssr91376 9 107296471 to 107296507 36 - TSS region transcription start site region 91376
Cish 9 107296659 to 107302784 6125 + protein coding gene cytokine inducible SH2-containing protein
Tssr86954 9 107296682 to 107296737 55 + TSS region transcription start site region 86954
Tssr86955 9 107296843 to 107296900 57 + TSS region transcription start site region 86955
Tssr91377 9 107298215 to 107298227 12 - TSS region transcription start site region 91377
Tssr86956 9 107298356 to 107298371 15 + TSS region transcription start site region 86956
Tssr86957 9 107298628 to 107298636 8 + TSS region transcription start site region 86957
Tssr86958 9 107299152 to 107299156 4 + TSS region transcription start site region 86958
Tssr86959 9 107299351 to 107299365 14 + TSS region transcription start site region 86959
Tssr86960 9 107299411 to 107299425 14 + TSS region transcription start site region 86960
Tssr86961 9 107299912 to 107299921 9 + TSS region transcription start site region 86961
Tssr86962 9 107299945 to 107299955 10 + TSS region transcription start site region 86962
Tssr86963 9 107299971 to 107299982 11 + TSS region transcription start site region 86963
Tssr86964 9 107300000 to 107300019 19 + TSS region transcription start site region 86964
Tssr86965 9 107300020 to 107300031 11 + TSS region transcription start site region 86965
Tssr86966 9 107300040 to 107300047 7 + TSS region transcription start site region 86966
Tssr86967 9 107300093 to 107300104 11 + TSS region transcription start site region 86967
Gm17041 9 107300380 to 107301838 1458 - antisense lncRNA gene predicted gene 17041
Tssr91378 9 107300662 to 107300685 23 - TSS region transcription start site region 91378
Tssr86968 9 107301838 to 107301843 5 + TSS region transcription start site region 86968
Tssr91379 9 107306163 to 107306190 27 - TSS region transcription start site region 91379
Tssr91380 9 107307550 to 107307570 20 - TSS region transcription start site region 91380
Tssr86969 9 107307708 to 107307743 35 + TSS region transcription start site region 86969
Tssr91381 9 107313059 to 107313077 18 - TSS region transcription start site region 91381
Tssr91382 9 107313310 to 107313348 38 - TSS region transcription start site region 91382
Tssr91383 9 107313371 to 107313379 8 - TSS region transcription start site region 91383
Tssr86970 9 107313521 to 107313534 13 + TSS region transcription start site region 86970
Hemk1 9 107327084 to 107338350 11266 - protein coding gene HemK methyltransferase family member 1
Tssr91384 9 107333813 to 107333828 15 - TSS region transcription start site region 91384
Tssr91385 9 107334315 to 107334322 7 - TSS region transcription start site region 91385
Tssr91386 9 107334570 to 107334583 13 - TSS region transcription start site region 91386
Tssr91387 9 107334605 to 107334618 13 - TSS region transcription start site region 91387
Tssr86971 9 107334760 to 107334769 9 + TSS region transcription start site region 86971
Tssr86972 9 107335736 to 107335760 24 + TSS region transcription start site region 86972
Tssr91388 9 107337995 to 107337999 4 - TSS region transcription start site region 91388
Cpgi22283 9 107338065 to 107338476 411 CpG island CpG island 22283
Tssr3008 9 107338298 to 107338302 4 - TSS region transcription start site region 3008
Tssr91389 9 107338305 to 107338351 46 - TSS region transcription start site region 91389
Cpgi22284 9 107340413 to 107340936 523 CpG island CpG island 22284
Tssr86973 9 107340593 to 107340648 55 + TSS region transcription start site region 86973
6430571L13Rik 9 107340640 to 107349683 9043 + protein coding gene RIKEN cDNA 6430571L13 gene
4930429P21Rik 9 107351276 to 107353986 2710 - lincRNA gene RIKEN cDNA 4930429P21 gene
D9Dcr98 9 107354092 to 107354187 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 98
Cpgi22285 9 107377927 to 107378633 706 CpG island CpG island 22285
D9Dcr99 9 107392041 to 107392147 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 99
Cpgi22286 9 107399170 to 107400969 1799 CpG island CpG island 22286
Cacna2d2 9 107399749 to 107529346 129597 + protein coding gene calcium channel, voltage-dependent, alpha 2/delta subunit 2
Tssr86974 9 107399796 to 107399849 53 + TSS region transcription start site region 86974
Tssr86975 9 107399858 to 107399872 14 + TSS region transcription start site region 86975
Tssr86976 9 107400043 to 107400064 21 + TSS region transcription start site region 86976
Gm17141 9 107423857 to 107430567 6710 - antisense lncRNA gene predicted gene 17141
Gm17118 9 107443950 to 107445031 1081 - antisense lncRNA gene predicted gene 17118
D9Dcr100 9 107451408 to 107451503 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 100
Gm34037 9 107484062 to 107490794 6732 - lncRNA gene predicted gene, 34037
Cpgi22287 9 107484441 to 107484678 237 CpG island CpG island 22287
Tssr91390 9 107490759 to 107490760 1 - TSS region transcription start site region 91390
Tssr86977 9 107505587 to 107505609 22 + TSS region transcription start site region 86977
Tssr86978 9 107505884 to 107505892 8 + TSS region transcription start site region 86978