Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107234156-107904184

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284 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700039M15Rik 9 107241220 to 107243997 2777 + lincRNA gene RIKEN cDNA 1700039M15 gene
Tssr3007 9 107249786 to 107249789 3 - TSS region transcription start site region 3007
Mapkapk3 9 107254927 to 107289877 34950 - protein coding gene mitogen-activated protein kinase-activated protein kinase 3
Tssr91363 9 107261031 to 107261050 19 - TSS region transcription start site region 91363
Tssr86946 9 107278845 to 107278858 13 + TSS region transcription start site region 86946
Tssr91364 9 107280664 to 107280673 9 - TSS region transcription start site region 91364
Tssr91365 9 107280680 to 107280700 20 - TSS region transcription start site region 91365
Tssr91366 9 107280827 to 107280871 44 - TSS region transcription start site region 91366
Tssr86947 9 107288948 to 107288967 19 + TSS region transcription start site region 86947
Cpgi22281 9 107288982 to 107290005 1023 CpG island CpG island 22281
Tssr86948 9 107289025 to 107289037 12 + TSS region transcription start site region 86948
Tssr91367 9 107289391 to 107289422 31 - TSS region transcription start site region 91367
Tssr91368 9 107289469 to 107289480 11 - TSS region transcription start site region 91368
Tssr91369 9 107289502 to 107289517 15 - TSS region transcription start site region 91369
Tssr91370 9 107289706 to 107289786 80 - TSS region transcription start site region 91370
Tssr91371 9 107289806 to 107289818 12 - TSS region transcription start site region 91371
Tssr91372 9 107289834 to 107289845 11 - TSS region transcription start site region 91372
Tssr91373 9 107289847 to 107289866 19 - TSS region transcription start site region 91373
Tssr86949 9 107289960 to 107289978 18 + TSS region transcription start site region 86949
Gm17040 9 107292437 to 107293323 886 - pseudogene predicted gene 17040
Tssr91374 9 107295605 to 107295642 37 - TSS region transcription start site region 91374
Tssr91375 9 107295756 to 107295763 7 - TSS region transcription start site region 91375
Tssr86950 9 107295899 to 107295910 11 + TSS region transcription start site region 86950
Tssr86951 9 107295928 to 107295935 7 + TSS region transcription start site region 86951
Tssr86952 9 107296210 to 107296221 11 + TSS region transcription start site region 86952
Cpgi22282 9 107296221 to 107297353 1132 CpG island CpG island 22282
Tssr86953 9 107296223 to 107296235 12 + TSS region transcription start site region 86953
Tssr91376 9 107296471 to 107296507 36 - TSS region transcription start site region 91376
Cish 9 107296659 to 107302784 6125 + protein coding gene cytokine inducible SH2-containing protein
Tssr86954 9 107296682 to 107296737 55 + TSS region transcription start site region 86954
Tssr86955 9 107296843 to 107296900 57 + TSS region transcription start site region 86955
Tssr91377 9 107298215 to 107298227 12 - TSS region transcription start site region 91377
Tssr86956 9 107298356 to 107298371 15 + TSS region transcription start site region 86956
Tssr86957 9 107298628 to 107298636 8 + TSS region transcription start site region 86957
Tssr86958 9 107299152 to 107299156 4 + TSS region transcription start site region 86958
Tssr86959 9 107299351 to 107299365 14 + TSS region transcription start site region 86959
Tssr86960 9 107299411 to 107299425 14 + TSS region transcription start site region 86960
Tssr86961 9 107299912 to 107299921 9 + TSS region transcription start site region 86961
Tssr86962 9 107299945 to 107299955 10 + TSS region transcription start site region 86962
Tssr86963 9 107299971 to 107299982 11 + TSS region transcription start site region 86963
Tssr86964 9 107300000 to 107300019 19 + TSS region transcription start site region 86964
Tssr86965 9 107300020 to 107300031 11 + TSS region transcription start site region 86965
Tssr86966 9 107300040 to 107300047 7 + TSS region transcription start site region 86966
Tssr86967 9 107300093 to 107300104 11 + TSS region transcription start site region 86967
Gm17041 9 107300380 to 107301838 1458 - antisense lncRNA gene predicted gene 17041
Tssr91378 9 107300662 to 107300685 23 - TSS region transcription start site region 91378
Tssr86968 9 107301838 to 107301843 5 + TSS region transcription start site region 86968
Tssr91379 9 107306163 to 107306190 27 - TSS region transcription start site region 91379
Tssr91380 9 107307550 to 107307570 20 - TSS region transcription start site region 91380
Tssr86969 9 107307708 to 107307743 35 + TSS region transcription start site region 86969
Tssr91381 9 107313059 to 107313077 18 - TSS region transcription start site region 91381
Tssr91382 9 107313310 to 107313348 38 - TSS region transcription start site region 91382
Tssr91383 9 107313371 to 107313379 8 - TSS region transcription start site region 91383
Tssr86970 9 107313521 to 107313534 13 + TSS region transcription start site region 86970
Hemk1 9 107327084 to 107338350 11266 - protein coding gene HemK methyltransferase family member 1
Tssr91384 9 107333813 to 107333828 15 - TSS region transcription start site region 91384
Tssr91385 9 107334315 to 107334322 7 - TSS region transcription start site region 91385
Tssr91386 9 107334570 to 107334583 13 - TSS region transcription start site region 91386
Tssr91387 9 107334605 to 107334618 13 - TSS region transcription start site region 91387
Tssr86971 9 107334760 to 107334769 9 + TSS region transcription start site region 86971
Tssr86972 9 107335736 to 107335760 24 + TSS region transcription start site region 86972
Tssr91388 9 107337995 to 107337999 4 - TSS region transcription start site region 91388
Cpgi22283 9 107338065 to 107338476 411 CpG island CpG island 22283
Tssr3008 9 107338298 to 107338302 4 - TSS region transcription start site region 3008
Tssr91389 9 107338305 to 107338351 46 - TSS region transcription start site region 91389
Cpgi22284 9 107340413 to 107340936 523 CpG island CpG island 22284
Tssr86973 9 107340593 to 107340648 55 + TSS region transcription start site region 86973
6430571L13Rik 9 107340640 to 107349683 9043 + protein coding gene RIKEN cDNA 6430571L13 gene
4930429P21Rik 9 107351276 to 107353986 2710 - lincRNA gene RIKEN cDNA 4930429P21 gene
D9Dcr98 9 107354092 to 107354187 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 98
Cpgi22285 9 107377927 to 107378633 706 CpG island CpG island 22285
D9Dcr99 9 107392041 to 107392147 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 99
Cpgi22286 9 107399170 to 107400969 1799 CpG island CpG island 22286
Cacna2d2 9 107399749 to 107529346 129597 + protein coding gene calcium channel, voltage-dependent, alpha 2/delta subunit 2
Tssr86974 9 107399796 to 107399849 53 + TSS region transcription start site region 86974
Tssr86975 9 107399858 to 107399872 14 + TSS region transcription start site region 86975
Tssr86976 9 107400043 to 107400064 21 + TSS region transcription start site region 86976
Gm17141 9 107423857 to 107430567 6710 - antisense lncRNA gene predicted gene 17141
Gm17118 9 107443950 to 107445031 1081 - antisense lncRNA gene predicted gene 17118
D9Dcr100 9 107451408 to 107451503 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 100
Gm34037 9 107484062 to 107490794 6732 - lncRNA gene predicted gene, 34037
Cpgi22287 9 107484441 to 107484678 237 CpG island CpG island 22287
Tssr91390 9 107490759 to 107490760 1 - TSS region transcription start site region 91390
Tssr86977 9 107505587 to 107505609 22 + TSS region transcription start site region 86977
Tssr86978 9 107505884 to 107505892 8 + TSS region transcription start site region 86978
Tssr91391 9 107517335 to 107517338 3 - TSS region transcription start site region 91391
Cpgi22288 9 107526447 to 107527518 1071 CpG island CpG island 22288
Cpgi22289 9 107533788 to 107535380 1592 CpG island CpG island 22289
Tmem115 9 107533945 to 107538656 4711 + protein coding gene transmembrane protein 115
Tssr86979 9 107534000 to 107534024 24 + TSS region transcription start site region 86979
Tssr86980 9 107534030 to 107534136 106 + TSS region transcription start site region 86980
Cyb561d2 9 107539011 to 107542188 3177 - protein coding gene cytochrome b-561 domain containing 2
Tssr86981 9 107539548 to 107539550 2 + TSS region transcription start site region 86981
Cpgi22290 9 107541503 to 107542524 1021 CpG island CpG island 22290
Tssr91392 9 107541816 to 107541830 14 - TSS region transcription start site region 91392
Tssr91393 9 107542110 to 107542155 45 - TSS region transcription start site region 91393
Tssr86982 9 107542218 to 107542258 40 + TSS region transcription start site region 86982
Nprl2 9 107542226 to 107545706 3480 + protein coding gene NPR2 like, GATOR1 complex subunit
Cpgi22291 9 107547106 to 107547459 353 CpG island CpG island 22291
Tssr86983 9 107547288 to 107547379 91 + TSS region transcription start site region 86983
Zmynd10 9 107547298 to 107551319 4021 + protein coding gene zinc finger, MYND domain containing 10
Gm34106 9 107547827 to 107550781 2954 - antisense lncRNA gene predicted gene, 34106
Tssr86984 9 107550770 to 107550798 28 + TSS region transcription start site region 86984
Tssr91394 9 107550835 to 107550837 2 - TSS region transcription start site region 91394
Cpgi22292 9 107550939 to 107552050 1111 CpG island CpG island 22292
Tssr86985 9 107551419 to 107551440 21 + TSS region transcription start site region 86985
Tssr86986 9 107551516 to 107551575 59 + TSS region transcription start site region 86986
Rassf1 9 107551555 to 107562267 10712 + protein coding gene Ras association (RalGDS/AF-6) domain family member 1
Cpgi22293 9 107553878 to 107555434 1556 CpG island CpG island 22293
Tssr91395 9 107554393 to 107554415 22 - TSS region transcription start site region 91395
Tssr86987 9 107554577 to 107554591 14 + TSS region transcription start site region 86987
Tssr86988 9 107554606 to 107554631 25 + TSS region transcription start site region 86988
Tssr86989 9 107554633 to 107554651 18 + TSS region transcription start site region 86989
Tssr86990 9 107554671 to 107554684 13 + TSS region transcription start site region 86990
Tssr86991 9 107554685 to 107554763 78 + TSS region transcription start site region 86991
Tssr86992 9 107554795 to 107554809 14 + TSS region transcription start site region 86992
Tssr86993 9 107554817 to 107554831 14 + TSS region transcription start site region 86993
Gm9917 9 107558809 to 107568415 9606 - antisense lncRNA gene predicted gene 9917
Cpgi22294 9 107562887 to 107563624 737 CpG island CpG island 22294
Tssr86994 9 107563246 to 107563285 39 + TSS region transcription start site region 86994
Tusc2 9 107563255 to 107566108 2853 + protein coding gene tumor suppressor 2, mitochondrial calcium regulator
Tssr86995 9 107563286 to 107563297 11 + TSS region transcription start site region 86995
Tssr91396 9 107566867 to 107566897 30 - TSS region transcription start site region 91396
Tssr91397 9 107566937 to 107566984 47 - TSS region transcription start site region 91397
Tssr86996 9 107567903 to 107567941 38 + TSS region transcription start site region 86996
Hyal2 9 107567945 to 107572779 4834 + protein coding gene hyaluronoglucosaminidase 2
Cpgi22295 9 107568975 to 107569705 730 CpG island CpG island 22295
Tssr86997 9 107569112 to 107569135 23 + TSS region transcription start site region 86997
Tssr86998 9 107569138 to 107569155 17 + TSS region transcription start site region 86998
Tssr86999 9 107569156 to 107569184 28 + TSS region transcription start site region 86999
Gm16343 9 107575820 to 107587425 11605 - antisense lncRNA gene predicted gene 16343
Tssr87000 9 107575906 to 107575917 11 + TSS region transcription start site region 87000
Tssr91398 9 107576817 to 107576840 23 - TSS region transcription start site region 91398
Tssr87001 9 107576915 to 107576976 61 + TSS region transcription start site region 87001
Hyal1 9 107576952 to 107580137 3185 + protein coding gene hyaluronoglucosaminidase 1
Tssr87002 9 107579900 to 107579912 12 + TSS region transcription start site region 87002
Naa80 9 107580170 to 107584048 3878 + protein coding gene N(alpha)-acetyltransferase 80, NatH catalytic subunit
Cpgi22296 9 107580607 to 107581088 481 CpG island CpG island 22296
Tssr87003 9 107580647 to 107580699 52 + TSS region transcription start site region 87003
Tssr87004 9 107580721 to 107580732 11 + TSS region transcription start site region 87004
Tssr87005 9 107580736 to 107580744 8 + TSS region transcription start site region 87005
Tssr87006 9 107580746 to 107580833 87 + TSS region transcription start site region 87006
Hyal3 9 107581296 to 107587359 6063 + protein coding gene hyaluronoglucosaminidase 3
Tssr87007 9 107581300 to 107581312 12 + TSS region transcription start site region 87007
Cpgi22297 9 107587418 to 107588288 870 CpG island CpG island 22297
Tssr87008 9 107587642 to 107587656 14 + TSS region transcription start site region 87008
Tssr87009 9 107587673 to 107587680 7 + TSS region transcription start site region 87009
Tssr87010 9 107587711 to 107587746 35 + TSS region transcription start site region 87010
Ifrd2 9 107587718 to 107593038 5320 + protein coding gene interferon-related developmental regulator 2
Tssr87011 9 107587757 to 107587801 44 + TSS region transcription start site region 87011
Tssr87012 9 107587866 to 107587889 23 + TSS region transcription start site region 87012
Tssr87013 9 107590924 to 107590945 21 + TSS region transcription start site region 87013
Tssr87014 9 107590946 to 107590976 30 + TSS region transcription start site region 87014
Lsmem2 9 107593841 to 107597075 3234 - protein coding gene leucine-rich single-pass membrane protein 2
Gm38150 9 107594440 to 107594891 451 + lincRNA gene predicted gene, 38150
Tssr91399 9 107594469 to 107594477 8 - TSS region transcription start site region 91399
Tssr91400 9 107597022 to 107597082 60 - TSS region transcription start site region 91400
Sema3b 9 107597674 to 107609229 11555 - protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Cpgi22298 9 107598650 to 107599285 635 CpG island CpG island 22298
Cpgi22299 9 107599930 to 107600160 230 CpG island CpG island 22299
Tssr91401 9 107605103 to 107605122 19 - TSS region transcription start site region 91401
Tssr91402 9 107605130 to 107605173 43 - TSS region transcription start site region 91402
Tssr91403 9 107605247 to 107605259 12 - TSS region transcription start site region 91403
Tssr91404 9 107605263 to 107605283 20 - TSS region transcription start site region 91404
Tssr91405 9 107605295 to 107605331 36 - TSS region transcription start site region 91405
Tssr91406 9 107606673 to 107606688 15 - TSS region transcription start site region 91406
Tssr87015 9 107606778 to 107606811 33 + TSS region transcription start site region 87015
Tssr91407 9 107609182 to 107609214 32 - TSS region transcription start site region 91407
Tssr91408 9 107609215 to 107609246 31 - TSS region transcription start site region 91408
Cpgi22300 9 107612322 to 107613171 849 CpG island CpG island 22300
Gnai2 9 107614125 to 107635367 21242 - protein coding gene guanine nucleotide binding protein (G protein), alpha inhibiting 2
Tssr87016 9 107614426 to 107614444 18 + TSS region transcription start site region 87016
Tssr91409 9 107614466 to 107614532 66 - TSS region transcription start site region 91409
Tssr87017 9 107614540 to 107614645 105 + TSS region transcription start site region 87017
Tssr91410 9 107614615 to 107614679 64 - TSS region transcription start site region 91410
Tssr87018 9 107614656 to 107614675 19 + TSS region transcription start site region 87018
Tssr91411 9 107614680 to 107614723 43 - TSS region transcription start site region 91411
Tssr3009 9 107614723 to 107614768 45 - TSS region transcription start site region 3009
Tssr91412 9 107614776 to 107614794 18 - TSS region transcription start site region 91412
Tssr91413 9 107614847 to 107614858 11 - TSS region transcription start site region 91413
Tssr91414 9 107614890 to 107614903 13 - TSS region transcription start site region 91414
Tssr91415 9 107614930 to 107614956 26 - TSS region transcription start site region 91415
Tssr91416 9 107614974 to 107614994 20 - TSS region transcription start site region 91416
Tssr91417 9 107615020 to 107615060 40 - TSS region transcription start site region 91417
Tssr91418 9 107615078 to 107615084 6 - TSS region transcription start site region 91418
Tssr91419 9 107615090 to 107615101 11 - TSS region transcription start site region 91419
Tssr91420 9 107615798 to 107615829 31 - TSS region transcription start site region 91420
Tssr91421 9 107616179 to 107616218 39 - TSS region transcription start site region 91421
Tssr91422 9 107616238 to 107616268 30 - TSS region transcription start site region 91422
Tssr91423 9 107616269 to 107616317 48 - TSS region transcription start site region 91423
Tssr91424 9 107616468 to 107616492 24 - TSS region transcription start site region 91424
Tssr91425 9 107619732 to 107619815 83 - TSS region transcription start site region 91425
D9Mit278 9 107621169 to 107621292 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 278
D9Mit278.2 9 107621219 to 107621328 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 278.2
D9Dcr101 9 107626418 to 107626524 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 101
Gm19721 9 107630776 to 107632539 1763 - unclassified non-coding RNA gene predicted gene, 19721
Cpgi22301 9 107633030 to 107633935 905 CpG island CpG island 22301
Cpgi22302 9 107634917 to 107635636 719 CpG island CpG island 22302
Tssr87019 9 107635123 to 107635146 23 + TSS region transcription start site region 87019
Tssr91426 9 107635330 to 107635353 23 - TSS region transcription start site region 91426