Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:106817803-107279006

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22276 9 106821565 to 106822716 1151 CpG island CpG island 22276
Dcaf1 9 106821874 to 106880992 59118 + protein coding gene DDB1 and CUL4 associated factor 1
Tssr86935 9 106821894 to 106821994 100 + TSS region transcription start site region 86935
Tssr86936 9 106821999 to 106822016 17 + TSS region transcription start site region 86936
Tssr86937 9 106822023 to 106822034 11 + TSS region transcription start site region 86937
Tssr86938 9 106839698 to 106839701 3 + TSS region transcription start site region 86938
Gm37612 9 106870674 to 106871501 827 + sense intronic lncRNA gene predicted gene, 37612
Tssr86939 9 106877937 to 106877939 2 + TSS region transcription start site region 86939
Tssr86940 9 106880109 to 106880131 22 + TSS region transcription start site region 86940
Rbm15b 9 106883985 to 106887000 3015 - protein coding gene RNA binding motif protein 15B
Cpgi22277 9 106885137 to 106887677 2540 CpG island CpG island 22277
Tssr86941 9 106886421 to 106886437 16 + TSS region transcription start site region 86941
Tssr91351 9 106887059 to 106887094 35 - TSS region transcription start site region 91351
Tssr91352 9 106887103 to 106887112 9 - TSS region transcription start site region 91352
Manf 9 106887415 to 106891938 4523 - protein coding gene mesencephalic astrocyte-derived neurotrophic factor
Tssr86942 9 106890181 to 106890211 30 + TSS region transcription start site region 86942
Cpgi22278 9 106891364 to 106892724 1360 CpG island CpG island 22278
Tssr91353 9 106891366 to 106891373 7 - TSS region transcription start site region 91353
Tssr91354 9 106891380 to 106891391 11 - TSS region transcription start site region 91354
Tssr91355 9 106891394 to 106891397 3 - TSS region transcription start site region 91355
Tssr91356 9 106891401 to 106891438 37 - TSS region transcription start site region 91356
4930524O07Rik 9 106891547 to 106895182 3635 + antisense lncRNA gene RIKEN cDNA 4930524O07 gene
Tssr91357 9 106891908 to 106891920 12 - TSS region transcription start site region 91357
Tssr91358 9 106891931 to 106891947 16 - TSS region transcription start site region 91358
Tssr91359 9 106891965 to 106891970 5 - TSS region transcription start site region 91359
Tssr86943 9 106892114 to 106892123 9 + TSS region transcription start site region 86943
Tssr86944 9 106892450 to 106892475 25 + TSS region transcription start site region 86944
Tssr86945 9 106892476 to 106892487 11 + TSS region transcription start site region 86945
Dock3 9 106892825 to 107231909 339084 - protein coding gene dedicator of cyto-kinesis 3
Gm18542 9 106924970 to 106925887 917 + pseudogene predicted gene, 18542
D9Dcr95 9 106929925 to 106930020 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 95
Tssr91360 9 106979958 to 106979961 3 - TSS region transcription start site region 91360
Gm17205 9 107047803 to 107049006 1203 + pseudogene predicted gene 17205
Gm22454 9 107096951 to 107097057 106 + snRNA gene predicted gene, 22454
Gm17117 9 107115074 to 107115372 298 + pseudogene predicted gene 17117
D9Dcr96 9 107153634 to 107153736 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 96
Gm23595 9 107164977 to 107165106 129 + snoRNA gene predicted gene, 23595
D9Dcr97 9 107166141 to 107166233 92 DNA segment DNA segment, Chr 9, Derry C. Roopenian 97
AA543401 9 107192807 to 107194061 1254 + pseudogene cDNA sequence, AA543401
Cpgi22279 9 107193430 to 107193961 531 CpG island CpG island 22279
Cpgi22280 9 107231115 to 107232458 1343 CpG island CpG island 22280
Gm22238 9 107231621 to 107231708 87 - miRNA gene predicted gene, 22238
Tssr91361 9 107231816 to 107231894 78 - TSS region transcription start site region 91361
Tssr91362 9 107231909 to 107231918 9 - TSS region transcription start site region 91362
1700039M15Rik 9 107241220 to 107243997 2777 + lincRNA gene RIKEN cDNA 1700039M15 gene
Tssr3007 9 107249786 to 107249789 3 - TSS region transcription start site region 3007
Mapkapk3 9 107254927 to 107289877 34950 - protein coding gene mitogen-activated protein kinase-activated protein kinase 3
Tssr91363 9 107261031 to 107261050 19 - TSS region transcription start site region 91363
Tssr86946 9 107278845 to 107278858 13 + TSS region transcription start site region 86946