Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:1066070-5006098

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21317 9 3000026 to 3001102 1076 CpG island CpG island 21317
Tssr83553 9 3000035 to 3000062 27 + TSS region transcription start site region 83553
Tssr83554 9 3000091 to 3000120 29 + TSS region transcription start site region 83554
Tssr83555 9 3000134 to 3000163 29 + TSS region transcription start site region 83555
Tssr83556 9 3000190 to 3000216 26 + TSS region transcription start site region 83556
Tssr88007 9 3000218 to 3000238 20 - TSS region transcription start site region 88007
Gm26870 9 3000282 to 3038313 38031 - lincRNA gene predicted gene, 26870
Gm10722 9 3000922 to 3002330 1408 + protein coding gene predicted gene 10722
Cpgi21318 9 3002110 to 3002315 205 CpG island CpG island 21318
Tssr83557 9 3002328 to 3002361 33 + TSS region transcription start site region 83557
Tssr88008 9 3002364 to 3002386 22 - TSS region transcription start site region 88008
Tssr83558 9 3002478 to 3002500 22 + TSS region transcription start site region 83558
Tssr83559 9 3002960 to 3002984 24 + TSS region transcription start site region 83559
Tssr88009 9 3002991 to 3003011 20 - TSS region transcription start site region 88009
Gm11168 9 3003346 to 3006948 3602 + protein coding gene predicted gene 11168
Tssr83560 9 3004490 to 3004523 33 + TSS region transcription start site region 83560
Cpgi21319 9 3004503 to 3004840 337 CpG island CpG island 21319
Tssr83561 9 3004794 to 3004817 23 + TSS region transcription start site region 83561
Tssr88010 9 3004821 to 3004841 20 - TSS region transcription start site region 88010
Tssr83562 9 3005125 to 3005137 12 + TSS region transcription start site region 83562
Tssr83563 9 3005620 to 3005636 16 + TSS region transcription start site region 83563
Tssr83564 9 3005917 to 3005928 11 + TSS region transcription start site region 83564
Tssr83565 9 3007410 to 3007440 30 + TSS region transcription start site region 83565
Gm10721 9 3013140 to 3014344 1204 + protein coding gene predicted gene 10721
Tssr83566 9 3015269 to 3015302 33 + TSS region transcription start site region 83566
Gm10720 9 3015654 to 3017210 1556 + protein coding gene predicted gene 10720
Tssr83567 9 3015698 to 3015722 24 + TSS region transcription start site region 83567
Tssr88011 9 3015726 to 3015745 19 - TSS region transcription start site region 88011
Cpgi21320 9 3016068 to 3016355 287 CpG island CpG island 21320
Tssr83568 9 3016320 to 3016336 16 + TSS region transcription start site region 83568
Tssr83569 9 3016878 to 3016900 22 + TSS region transcription start site region 83569
Tssr88012 9 3016905 to 3016926 21 - TSS region transcription start site region 88012
Gm10719 9 3017408 to 3021593 4185 + protein coding gene predicted gene 10719
Tssr83570 9 3017525 to 3017543 18 + TSS region transcription start site region 83570
Tssr83571 9 3018760 to 3018779 19 + TSS region transcription start site region 83571
Cpgi21321 9 3018766 to 3019491 725 CpG island CpG island 21321
Tssr83572 9 3018961 to 3018980 19 + TSS region transcription start site region 83572
Tssr88013 9 3018988 to 3019010 22 - TSS region transcription start site region 88013
Tssr83573 9 3021256 to 3021283 27 + TSS region transcription start site region 83573
Tssr2755 9 3021289 to 3021309 20 - TSS region transcription start site region 2755
Tssr83574 9 3022177 to 3022189 12 + TSS region transcription start site region 83574
Tssr88014 9 3022198 to 3022225 27 - TSS region transcription start site region 88014
Tssr83575 9 3022736 to 3022762 26 + TSS region transcription start site region 83575
Tssr83576 9 3022870 to 3022899 29 + TSS region transcription start site region 83576
Tssr88015 9 3022909 to 3022917 8 - TSS region transcription start site region 88015
Cpgi21322 9 3023214 to 3023559 345 CpG island CpG island 21322
Gm10718 9 3023547 to 3025218 1671 + protein coding gene predicted gene 10718
Tssr88016 9 3024670 to 3024681 11 - TSS region transcription start site region 88016
Tssr83577 9 3024740 to 3024777 37 + TSS region transcription start site region 83577
Tssr88017 9 3024775 to 3024789 14 - TSS region transcription start site region 88017
Cpgi21323 9 3025320 to 3025908 588 CpG island CpG island 21323
Gm10717 9 3025417 to 3033289 7872 + protein coding gene predicted gene 10717
Tssr83578 9 3025472 to 3025490 18 + TSS region transcription start site region 83578
Tssr83579 9 3025495 to 3025532 37 + TSS region transcription start site region 83579
Tssr88018 9 3025531 to 3025558 27 - TSS region transcription start site region 88018
Tssr83580 9 3025608 to 3025628 20 + TSS region transcription start site region 83580
Tssr83581 9 3025853 to 3025873 20 + TSS region transcription start site region 83581
Cpgi21324 9 3026325 to 3027180 855 CpG island CpG island 21324
Tssr83582 9 3026477 to 3026495 18 + TSS region transcription start site region 83582
Tssr83583 9 3026652 to 3026682 30 + TSS region transcription start site region 83583
Tssr88019 9 3026671 to 3026720 49 - TSS region transcription start site region 88019
Tssr83584 9 3026737 to 3026769 32 + TSS region transcription start site region 83584
Tssr88020 9 3026768 to 3026788 20 - TSS region transcription start site region 88020
Tssr83585 9 3027119 to 3027145 26 + TSS region transcription start site region 83585
Tssr88021 9 3027391 to 3027412 21 - TSS region transcription start site region 88021
Tssr83586 9 3027439 to 3027468 29 + TSS region transcription start site region 83586
Tssr88022 9 3027475 to 3027488 13 - TSS region transcription start site region 88022
Tssr83587 9 3027755 to 3027775 20 + TSS region transcription start site region 83587
Tssr83588 9 3029371 to 3029395 24 + TSS region transcription start site region 83588
Cpgi21325 9 3029387 to 3029710 323 CpG island CpG island 21325
Tssr88023 9 3029402 to 3029420 18 - TSS region transcription start site region 88023
Tssr83589 9 3029655 to 3029676 21 + TSS region transcription start site region 83589
Tssr83590 9 3030155 to 3030176 21 + TSS region transcription start site region 83590
Tssr83591 9 3031068 to 3031097 29 + TSS region transcription start site region 83591
Tssr83592 9 3031098 to 3031114 16 + TSS region transcription start site region 83592
Tssr83593 9 3031884 to 3031894 10 + TSS region transcription start site region 83593
Cpgi21326 9 3031887 to 3032060 173 CpG island CpG island 21326
Tssr88024 9 3031911 to 3031924 13 - TSS region transcription start site region 88024
Tssr83594 9 3031999 to 3032033 34 + TSS region transcription start site region 83594
Tssr83595 9 3032347 to 3032397 50 + TSS region transcription start site region 83595
Cpgi21327 9 3032351 to 3032711 360 CpG island CpG island 21327
Tssr83596 9 3032435 to 3032456 21 + TSS region transcription start site region 83596
Tssr83597 9 3034197 to 3034209 12 + TSS region transcription start site region 83597
Gm17535 9 3034599 to 3035805 1206 + protein coding gene predicted gene, 17535
Tssr83598 9 3035719 to 3035737 18 + TSS region transcription start site region 83598
Cpgi21328 9 3035724 to 3036589 865 CpG island CpG island 21328
Tssr83599 9 3035877 to 3035903 26 + TSS region transcription start site region 83599
Tssr88025 9 3035912 to 3035922 10 - TSS region transcription start site region 88025
Tssr83600 9 3036070 to 3036098 28 + TSS region transcription start site region 83600
Tssr88026 9 3036093 to 3036128 35 - TSS region transcription start site region 88026
Tssr83601 9 3036315 to 3036343 28 + TSS region transcription start site region 83601
Tssr88027 9 3036347 to 3036373 26 - TSS region transcription start site region 88027
Tssr83602 9 3036356 to 3036387 31 + TSS region transcription start site region 83602
Tssr88028 9 3036386 to 3036397 11 - TSS region transcription start site region 88028
Tssr83603 9 3036398 to 3036401 3 + TSS region transcription start site region 83603
Gm10715 9 3036877 to 3038316 1439 + protein coding gene predicted gene 10715
Tssr83604 9 3037330 to 3037355 25 + TSS region transcription start site region 83604
Cpgi21329 9 3038008 to 3038230 222 CpG island CpG island 21329
Tssr83605 9 3038013 to 3038034 21 + TSS region transcription start site region 83605
Tssr88029 9 3038044 to 3038070 26 - TSS region transcription start site region 88029
Tssr83606 9 3038182 to 3038198 16 + TSS region transcription start site region 83606
Tssr88030 9 3038183 to 3038194 11 - TSS region transcription start site region 88030
Mir101c 9 3038669 to 3038743 74 - miRNA gene microRNA 101c
Gm32390 9 3137043 to 3138739 1696 - pseudogene predicted gene, 32390
4930547G20Rik 9 3184956 to 3185813 857 unclassified gene RIKEN cDNA 4930547G20 gene
Gm7344 9 3187110 to 3188331 1221 + pseudogene predicted gene 7344
4930433N12Rik 9 3190269 to 3199813 9544 - lncRNA gene RIKEN cDNA 4930433N12 gene
Cpgi21330 9 3199810 to 3200237 427 CpG island CpG island 21330
Tssr83607 9 3199888 to 3199899 11 + TSS region transcription start site region 83607
Gm31138 9 3199894 to 3215230 15336 + lincRNA gene predicted gene, 31138
Tssr83608 9 3199908 to 3199928 20 + TSS region transcription start site region 83608
Tssr83609 9 3199930 to 3199939 9 + TSS region transcription start site region 83609
Tssr83610 9 3199944 to 3199951 7 + TSS region transcription start site region 83610
4930422G07Rik 9 3213285 to 3214153 868 unclassified gene RIKEN cDNA 4930422G07 gene
Olfr369-ps1 9 3233343 to 3236366 3023 + pseudogene olfactory receptor 369, pseudogene 1
Tssr88031 9 3258604 to 3258629 25 - TSS region transcription start site region 88031
Tssr83611 9 3258829 to 3258856 27 + TSS region transcription start site region 83611
Tssr88032 9 3258863 to 3258902 39 - TSS region transcription start site region 88032
Tssr88033 9 3259231 to 3259247 16 - TSS region transcription start site region 88033
Tssr88034 9 3260872 to 3260875 3 - TSS region transcription start site region 88034
Gm27679 9 3263442 to 3263525 83 - unclassified non-coding RNA gene predicted gene, 27679
Tssr83612 9 3335135 to 3335161 26 + TSS region transcription start site region 83612
Alkbh8 9 3335231 to 3391154 55923 + protein coding gene alkB homolog 8, tRNA methyltransferase
Tssr83613 9 3335470 to 3335501 31 + TSS region transcription start site region 83613
Tssr83614 9 3335508 to 3335531 23 + TSS region transcription start site region 83614
Gm24918 9 3352657 to 3352786 129 + snoRNA gene predicted gene, 24918
Tssr83615 9 3372522 to 3372525 3 + TSS region transcription start site region 83615
Gm23275 9 3395439 to 3395542 103 + snRNA gene predicted gene, 23275
Cwf19l2 9 3403592 to 3479236 75644 + protein coding gene CWF19-like 2, cell cycle control (S. pombe)
Cpgi21331 9 3403873 to 3404175 302 CpG island CpG island 21331
Tssr83616 9 3404039 to 3404050 11 + TSS region transcription start site region 83616
Tssr83617 9 3404058 to 3404098 40 + TSS region transcription start site region 83617
Tssr83618 9 3416966 to 3416997 31 + TSS region transcription start site region 83618
Gm5362 9 3494379 to 3497463 3084 - pseudogene predicted gene 5362
Gm40506 9 3529135 to 3532818 3683 - lncRNA gene predicted gene, 40506
Cpgi21332 9 3531680 to 3533239 1559 CpG island CpG island 21332
Tssr83619 9 3532295 to 3532354 59 + TSS region transcription start site region 83619
Tssr83620 9 3532360 to 3532448 88 + TSS region transcription start site region 83620
Gucy1a2 9 3532778 to 3894736 361958 + protein coding gene guanylate cyclase 1, soluble, alpha 2
Tssr83621 9 3904162 to 3904180 18 + TSS region transcription start site region 83621
Tgq19 9 4060750 to 4060750 0 QTL triglyceride QTL 19
Gm45957 9 4138746 to 4182511 43765 + lncRNA gene predicted gene, 45957
Gm5363 9 4213922 to 4215941 2019 + pseudogene predicted gene 5363
Gm45860 9 4228796 to 4229129 333 - pseudogene predicted gene 45860
Tssr83622 9 4250954 to 4250958 4 + TSS region transcription start site region 83622
Cpgi21333 9 4260034 to 4260893 859 CpG island CpG island 21333
Gm22195 9 4271130 to 4271237 107 - miRNA gene predicted gene, 22195
Aasdhppt 9 4294793 to 4309471 14678 - protein coding gene aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
Cpgi21334 9 4309041 to 4310212 1171 CpG island CpG island 21334
Tssr88035 9 4309432 to 4309504 72 - TSS region transcription start site region 88035
Tssr88036 9 4309510 to 4309517 7 - TSS region transcription start site region 88036
Tssr83623 9 4309719 to 4309748 29 + TSS region transcription start site region 83623
Tssr83624 9 4309760 to 4309779 19 + TSS region transcription start site region 83624
Tssr83625 9 4309799 to 4309825 26 + TSS region transcription start site region 83625
Tssr83626 9 4309827 to 4309842 15 + TSS region transcription start site region 83626
Kbtbd3 9 4309833 to 4331732 21899 + protein coding gene kelch repeat and BTB (POZ) domain containing 3
Tssr83627 9 4309878 to 4309933 55 + TSS region transcription start site region 83627
Tssr83628 9 4313101 to 4313105 4 + TSS region transcription start site region 83628
Gm23992 9 4371269 to 4371335 66 - miRNA gene predicted gene, 23992
Cpgi21335 9 4376105 to 4376722 617 CpG island CpG island 21335
Tssr83629 9 4376533 to 4376600 67 + TSS region transcription start site region 83629
Msantd4 9 4376562 to 4386870 10308 + protein coding gene Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
Gria4 9 4417896 to 4796234 378338 - protein coding gene glutamate receptor, ionotropic, AMPA4 (alpha 4)
Gm23811 9 4455940 to 4456023 83 - miRNA gene predicted gene, 23811
Tssr88037 9 4472210 to 4472228 18 - TSS region transcription start site region 88037
Tssr88038 9 4507961 to 4507965 4 - TSS region transcription start site region 88038
Gm46101 9 4513388 to 4532927 19539 + lncRNA gene predicted gene, 46101
Tssr88039 9 4635267 to 4635271 4 - TSS region transcription start site region 88039
Tssr88040 9 4765243 to 4765247 4 - TSS region transcription start site region 88040
Cpgi21336 9 4795545 to 4796457 912 CpG island CpG island 21336
Tssr88041 9 4795561 to 4795644 83 - TSS region transcription start site region 88041
Tssr88042 9 4795914 to 4795928 14 - TSS region transcription start site region 88042
Tssr88043 9 4795951 to 4795964 13 - TSS region transcription start site region 88043
Tssr88044 9 4795969 to 4795987 18 - TSS region transcription start site region 88044
Tssr88045 9 4796022 to 4796033 11 - TSS region transcription start site region 88045
Tssr88046 9 4796034 to 4796066 32 - TSS region transcription start site region 88046
Tssr88047 9 4796070 to 4796081 11 - TSS region transcription start site region 88047
Tssr88048 9 4796141 to 4796159 18 - TSS region transcription start site region 88048
Tssr88049 9 4796160 to 4796195 35 - TSS region transcription start site region 88049
Tssr88050 9 4796196 to 4796216 20 - TSS region transcription start site region 88050
Tssr88051 9 4796218 to 4796267 49 - TSS region transcription start site region 88051
Gm46100 9 4796337 to 4800157 3820 + lncRNA gene predicted gene, 46100
Cpgi21337 9 4977605 to 4977809 204 CpG island CpG island 21337
Gm7390 9 4977959 to 4979174 1215 + pseudogene predicted gene 7390