Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:106477648-109573782

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917 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22269 9 106476855 to 106477877 1022 CpG island CpG island 22269
Rrp9 9 106477259 to 106485422 8163 + protein coding gene RRP9, small subunit (SSU) processome component, homolog (yeast)
Cpgi22270 9 106481186 to 106481398 212 CpG island CpG island 22270
Tssr86922 9 106484481 to 106484493 12 + TSS region transcription start site region 86922
Tssr86923 9 106499936 to 106499939 3 + TSS region transcription start site region 86923
Tssr86924 9 106499954 to 106499965 11 + TSS region transcription start site region 86924
Tssr86925 9 106499967 to 106499972 5 + TSS region transcription start site region 86925
Iqcf1 9 106499967 to 106502250 2283 + protein coding gene IQ motif containing F1
Tssr86926 9 106499983 to 106499995 12 + TSS region transcription start site region 86926
Iqcf3 9 106504665 to 106561631 56966 - protein coding gene IQ motif containing F3
Tssr86927 9 106514572 to 106514602 30 + TSS region transcription start site region 86927
Iqcf5 9 106514573 to 106516003 1430 + protein coding gene IQ motif containing F5
Tssr86928 9 106514606 to 106514611 5 + TSS region transcription start site region 86928
Tssr91327 9 106544683 to 106544688 5 - TSS region transcription start site region 91327
Tssr91328 9 106550238 to 106550251 13 - TSS region transcription start site region 91328
Tssr91329 9 106550260 to 106550261 1 - TSS region transcription start site region 91329
D9Mit78 9 106553293 to 106553417 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 78
D9Dcr90 9 106553313 to 106553408 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 90
Tssr91330 9 106561617 to 106561636 19 - TSS region transcription start site region 91330
Tssr3006 9 106561649 to 106561653 4 - TSS region transcription start site region 3006
Tssr86929 9 106561712 to 106561718 6 + TSS region transcription start site region 86929
Tssr86930 9 106561746 to 106561753 7 + TSS region transcription start site region 86930
Iqcf4 9 106568319 to 106570967 2648 - protein coding gene IQ motif containing F4
Tssr91331 9 106570983 to 106571005 22 - TSS region transcription start site region 91331
Gm39420 9 106577639 to 106626384 48745 - lncRNA gene predicted gene, 39420
Gm39421 9 106580271 to 106583783 3512 + lncRNA gene predicted gene, 39421
D9Dcr91 9 106603645 to 106603743 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 91
D9Dcr92 9 106618512 to 106618607 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 92
D9Mit79 9 106622185 to 106622411 226 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 79
Iqcf6 9 106626582 to 106627675 1093 + protein coding gene IQ motif containing F6
Tssr86931 9 106626599 to 106626613 14 + TSS region transcription start site region 86931
Gm26185 9 106636318 to 106636583 265 + unclassified non-coding RNA gene predicted gene, 26185
Gm28111 9 106640928 to 106643564 2636 + antisense lncRNA gene predicted gene 28111
Grm2 9 106644534 to 106656109 11575 - protein coding gene glutamate receptor, metabotropic 2
Cpgi22271 9 106647095 to 106648212 1117 CpG island CpG island 22271
Cpgi22272 9 106650422 to 106651188 766 CpG island CpG island 22272
Cpgi22273 9 106655603 to 106656449 846 CpG island CpG island 22273
Tssr91332 9 106656081 to 106656096 15 - TSS region transcription start site region 91332
Tssr86932 9 106656402 to 106656403 1 + TSS region transcription start site region 86932
Tex264 9 106658746 to 106685927 27181 - protein coding gene testis expressed gene 264
Tssr91333 9 106663246 to 106663270 24 - TSS region transcription start site region 91333
Tssr91334 9 106673677 to 106673699 22 - TSS region transcription start site region 91334
Tssr91335 9 106682170 to 106682185 15 - TSS region transcription start site region 91335
Tssr91336 9 106682199 to 106682214 15 - TSS region transcription start site region 91336
Tssr91337 9 106682236 to 106682249 13 - TSS region transcription start site region 91337
Tssr91338 9 106682360 to 106682364 4 - TSS region transcription start site region 91338
Cpgi22274 9 106684967 to 106686275 1308 CpG island CpG island 22274
Tssr91339 9 106685303 to 106685320 17 - TSS region transcription start site region 91339
Tssr91340 9 106685325 to 106685363 38 - TSS region transcription start site region 91340
Tssr91341 9 106685367 to 106685385 18 - TSS region transcription start site region 91341
Tssr91342 9 106685653 to 106685674 21 - TSS region transcription start site region 91342
Tssr91343 9 106685702 to 106685728 26 - TSS region transcription start site region 91343
Tssr91344 9 106685741 to 106685752 11 - TSS region transcription start site region 91344
Tssr91345 9 106685762 to 106685790 28 - TSS region transcription start site region 91345
Tssr91346 9 106685808 to 106685824 16 - TSS region transcription start site region 91346
Tssr91347 9 106685868 to 106685890 22 - TSS region transcription start site region 91347
Tssr91348 9 106685892 to 106685961 69 - TSS region transcription start site region 91348
Rad54l2 9 106688082 to 106789194 101112 - protein coding gene RAD54 like 2 (S. cerevisiae)
Tssr91349 9 106691106 to 106691110 4 - TSS region transcription start site region 91349
D9Dcr93 9 106729687 to 106729795 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 93
5730493B19Rik 9 106738530 to 106740299 1769 unclassified gene RIKEN cDNA 5730493B19 gene
D9Dcr94 9 106783303 to 106783402 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 94
Cpgi22275 9 106788658 to 106789267 609 CpG island CpG island 22275
Tssr91350 9 106789130 to 106789208 78 - TSS region transcription start site region 91350
Gm22384 9 106812495 to 106812598 103 - snRNA gene predicted gene, 22384
Tssr86933 9 106814125 to 106814133 8 + TSS region transcription start site region 86933
Tssr86934 9 106814144 to 106814156 12 + TSS region transcription start site region 86934
Cpgi22276 9 106821565 to 106822716 1151 CpG island CpG island 22276
Dcaf1 9 106821874 to 106880992 59118 + protein coding gene DDB1 and CUL4 associated factor 1
Tssr86935 9 106821894 to 106821994 100 + TSS region transcription start site region 86935
Tssr86936 9 106821999 to 106822016 17 + TSS region transcription start site region 86936
Tssr86937 9 106822023 to 106822034 11 + TSS region transcription start site region 86937
Tssr86938 9 106839698 to 106839701 3 + TSS region transcription start site region 86938
Gm37612 9 106870674 to 106871501 827 + sense intronic lncRNA gene predicted gene, 37612
Tssr86939 9 106877937 to 106877939 2 + TSS region transcription start site region 86939
Tssr86940 9 106880109 to 106880131 22 + TSS region transcription start site region 86940
Rbm15b 9 106883985 to 106887000 3015 - protein coding gene RNA binding motif protein 15B
Cpgi22277 9 106885137 to 106887677 2540 CpG island CpG island 22277
Tssr86941 9 106886421 to 106886437 16 + TSS region transcription start site region 86941
Tssr91351 9 106887059 to 106887094 35 - TSS region transcription start site region 91351
Tssr91352 9 106887103 to 106887112 9 - TSS region transcription start site region 91352
Manf 9 106887415 to 106891938 4523 - protein coding gene mesencephalic astrocyte-derived neurotrophic factor
Tssr86942 9 106890181 to 106890211 30 + TSS region transcription start site region 86942
Cpgi22278 9 106891364 to 106892724 1360 CpG island CpG island 22278
Tssr91353 9 106891366 to 106891373 7 - TSS region transcription start site region 91353
Tssr91354 9 106891380 to 106891391 11 - TSS region transcription start site region 91354
Tssr91355 9 106891394 to 106891397 3 - TSS region transcription start site region 91355
Tssr91356 9 106891401 to 106891438 37 - TSS region transcription start site region 91356
4930524O07Rik 9 106891547 to 106895182 3635 + antisense lncRNA gene RIKEN cDNA 4930524O07 gene
Tssr91357 9 106891908 to 106891920 12 - TSS region transcription start site region 91357
Tssr91358 9 106891931 to 106891947 16 - TSS region transcription start site region 91358
Tssr91359 9 106891965 to 106891970 5 - TSS region transcription start site region 91359
Tssr86943 9 106892114 to 106892123 9 + TSS region transcription start site region 86943
Tssr86944 9 106892450 to 106892475 25 + TSS region transcription start site region 86944
Tssr86945 9 106892476 to 106892487 11 + TSS region transcription start site region 86945
Dock3 9 106892825 to 107231909 339084 - protein coding gene dedicator of cyto-kinesis 3
Gm18542 9 106924970 to 106925887 917 + pseudogene predicted gene, 18542
D9Dcr95 9 106929925 to 106930020 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 95
Tssr91360 9 106979958 to 106979961 3 - TSS region transcription start site region 91360
Gm17205 9 107047803 to 107049006 1203 + pseudogene predicted gene 17205
Gm22454 9 107096951 to 107097057 106 + snRNA gene predicted gene, 22454
Gm17117 9 107115074 to 107115372 298 + pseudogene predicted gene 17117
D9Dcr96 9 107153634 to 107153736 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 96
Gm23595 9 107164977 to 107165106 129 + snoRNA gene predicted gene, 23595
D9Dcr97 9 107166141 to 107166233 92 DNA segment DNA segment, Chr 9, Derry C. Roopenian 97
AA543401 9 107192807 to 107194061 1254 + pseudogene cDNA sequence, AA543401
Cpgi22279 9 107193430 to 107193961 531 CpG island CpG island 22279
Cpgi22280 9 107231115 to 107232458 1343 CpG island CpG island 22280
Gm22238 9 107231621 to 107231708 87 - miRNA gene predicted gene, 22238
Tssr91361 9 107231816 to 107231894 78 - TSS region transcription start site region 91361
Tssr91362 9 107231909 to 107231918 9 - TSS region transcription start site region 91362
1700039M15Rik 9 107241220 to 107243997 2777 + lincRNA gene RIKEN cDNA 1700039M15 gene
Tssr3007 9 107249786 to 107249789 3 - TSS region transcription start site region 3007
Mapkapk3 9 107254927 to 107289877 34950 - protein coding gene mitogen-activated protein kinase-activated protein kinase 3
Tssr91363 9 107261031 to 107261050 19 - TSS region transcription start site region 91363
Tssr86946 9 107278845 to 107278858 13 + TSS region transcription start site region 86946
Tssr91364 9 107280664 to 107280673 9 - TSS region transcription start site region 91364
Tssr91365 9 107280680 to 107280700 20 - TSS region transcription start site region 91365
Tssr91366 9 107280827 to 107280871 44 - TSS region transcription start site region 91366
Tssr86947 9 107288948 to 107288967 19 + TSS region transcription start site region 86947
Cpgi22281 9 107288982 to 107290005 1023 CpG island CpG island 22281
Tssr86948 9 107289025 to 107289037 12 + TSS region transcription start site region 86948
Tssr91367 9 107289391 to 107289422 31 - TSS region transcription start site region 91367
Tssr91368 9 107289469 to 107289480 11 - TSS region transcription start site region 91368
Tssr91369 9 107289502 to 107289517 15 - TSS region transcription start site region 91369
Tssr91370 9 107289706 to 107289786 80 - TSS region transcription start site region 91370
Tssr91371 9 107289806 to 107289818 12 - TSS region transcription start site region 91371
Tssr91372 9 107289834 to 107289845 11 - TSS region transcription start site region 91372
Tssr91373 9 107289847 to 107289866 19 - TSS region transcription start site region 91373
Tssr86949 9 107289960 to 107289978 18 + TSS region transcription start site region 86949
Gm17040 9 107292437 to 107293323 886 - pseudogene predicted gene 17040
Tssr91374 9 107295605 to 107295642 37 - TSS region transcription start site region 91374
Tssr91375 9 107295756 to 107295763 7 - TSS region transcription start site region 91375
Tssr86950 9 107295899 to 107295910 11 + TSS region transcription start site region 86950
Tssr86951 9 107295928 to 107295935 7 + TSS region transcription start site region 86951
Tssr86952 9 107296210 to 107296221 11 + TSS region transcription start site region 86952
Cpgi22282 9 107296221 to 107297353 1132 CpG island CpG island 22282
Tssr86953 9 107296223 to 107296235 12 + TSS region transcription start site region 86953
Tssr91376 9 107296471 to 107296507 36 - TSS region transcription start site region 91376
Cish 9 107296659 to 107302784 6125 + protein coding gene cytokine inducible SH2-containing protein
Tssr86954 9 107296682 to 107296737 55 + TSS region transcription start site region 86954
Tssr86955 9 107296843 to 107296900 57 + TSS region transcription start site region 86955
Tssr91377 9 107298215 to 107298227 12 - TSS region transcription start site region 91377
Tssr86956 9 107298356 to 107298371 15 + TSS region transcription start site region 86956
Tssr86957 9 107298628 to 107298636 8 + TSS region transcription start site region 86957
Tssr86958 9 107299152 to 107299156 4 + TSS region transcription start site region 86958
Tssr86959 9 107299351 to 107299365 14 + TSS region transcription start site region 86959
Tssr86960 9 107299411 to 107299425 14 + TSS region transcription start site region 86960
Tssr86961 9 107299912 to 107299921 9 + TSS region transcription start site region 86961
Tssr86962 9 107299945 to 107299955 10 + TSS region transcription start site region 86962
Tssr86963 9 107299971 to 107299982 11 + TSS region transcription start site region 86963
Tssr86964 9 107300000 to 107300019 19 + TSS region transcription start site region 86964
Tssr86965 9 107300020 to 107300031 11 + TSS region transcription start site region 86965
Tssr86966 9 107300040 to 107300047 7 + TSS region transcription start site region 86966
Tssr86967 9 107300093 to 107300104 11 + TSS region transcription start site region 86967
Gm17041 9 107300380 to 107301838 1458 - antisense lncRNA gene predicted gene 17041
Tssr91378 9 107300662 to 107300685 23 - TSS region transcription start site region 91378
Tssr86968 9 107301838 to 107301843 5 + TSS region transcription start site region 86968
Tssr91379 9 107306163 to 107306190 27 - TSS region transcription start site region 91379
Tssr91380 9 107307550 to 107307570 20 - TSS region transcription start site region 91380
Tssr86969 9 107307708 to 107307743 35 + TSS region transcription start site region 86969
Tssr91381 9 107313059 to 107313077 18 - TSS region transcription start site region 91381
Tssr91382 9 107313310 to 107313348 38 - TSS region transcription start site region 91382
Tssr91383 9 107313371 to 107313379 8 - TSS region transcription start site region 91383
Tssr86970 9 107313521 to 107313534 13 + TSS region transcription start site region 86970
Hemk1 9 107327084 to 107338350 11266 - protein coding gene HemK methyltransferase family member 1
Tssr91384 9 107333813 to 107333828 15 - TSS region transcription start site region 91384
Tssr91385 9 107334315 to 107334322 7 - TSS region transcription start site region 91385
Tssr91386 9 107334570 to 107334583 13 - TSS region transcription start site region 91386
Tssr91387 9 107334605 to 107334618 13 - TSS region transcription start site region 91387
Tssr86971 9 107334760 to 107334769 9 + TSS region transcription start site region 86971
Tssr86972 9 107335736 to 107335760 24 + TSS region transcription start site region 86972
Tssr91388 9 107337995 to 107337999 4 - TSS region transcription start site region 91388
Cpgi22283 9 107338065 to 107338476 411 CpG island CpG island 22283
Tssr3008 9 107338298 to 107338302 4 - TSS region transcription start site region 3008
Tssr91389 9 107338305 to 107338351 46 - TSS region transcription start site region 91389
Cpgi22284 9 107340413 to 107340936 523 CpG island CpG island 22284
Tssr86973 9 107340593 to 107340648 55 + TSS region transcription start site region 86973
6430571L13Rik 9 107340640 to 107349683 9043 + protein coding gene RIKEN cDNA 6430571L13 gene
4930429P21Rik 9 107351276 to 107353986 2710 - lincRNA gene RIKEN cDNA 4930429P21 gene
D9Dcr98 9 107354092 to 107354187 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 98
Cpgi22285 9 107377927 to 107378633 706 CpG island CpG island 22285
D9Dcr99 9 107392041 to 107392147 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 99
Cpgi22286 9 107399170 to 107400969 1799 CpG island CpG island 22286
Cacna2d2 9 107399749 to 107529346 129597 + protein coding gene calcium channel, voltage-dependent, alpha 2/delta subunit 2
Tssr86974 9 107399796 to 107399849 53 + TSS region transcription start site region 86974
Tssr86975 9 107399858 to 107399872 14 + TSS region transcription start site region 86975
Tssr86976 9 107400043 to 107400064 21 + TSS region transcription start site region 86976
Gm17141 9 107423857 to 107430567 6710 - antisense lncRNA gene predicted gene 17141
Gm17118 9 107443950 to 107445031 1081 - antisense lncRNA gene predicted gene 17118
D9Dcr100 9 107451408 to 107451503 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 100
Gm34037 9 107484062 to 107490794 6732 - lncRNA gene predicted gene, 34037
Cpgi22287 9 107484441 to 107484678 237 CpG island CpG island 22287
Tssr91390 9 107490759 to 107490760 1 - TSS region transcription start site region 91390
Tssr86977 9 107505587 to 107505609 22 + TSS region transcription start site region 86977
Tssr86978 9 107505884 to 107505892 8 + TSS region transcription start site region 86978
Tssr91391 9 107517335 to 107517338 3 - TSS region transcription start site region 91391
Cpgi22288 9 107526447 to 107527518 1071 CpG island CpG island 22288
Cpgi22289 9 107533788 to 107535380 1592 CpG island CpG island 22289
Tmem115 9 107533945 to 107538656 4711 + protein coding gene transmembrane protein 115