Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:106460260-106640261

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcbp4 9 106453383 to 106464012 10629 + protein coding gene poly(rC) binding protein 4
Tssr86911 9 106460623 to 106460646 23 + TSS region transcription start site region 86911
Tssr86912 9 106460650 to 106460657 7 + TSS region transcription start site region 86912
Tssr86913 9 106460690 to 106460698 8 + TSS region transcription start site region 86913
Tssr86914 9 106461884 to 106461895 11 + TSS region transcription start site region 86914
Cpgi22267 9 106462486 to 106462646 160 CpG island CpG island 22267
Tssr86915 9 106463153 to 106463204 51 + TSS region transcription start site region 86915
Tssr86916 9 106463257 to 106463272 15 + TSS region transcription start site region 86916
Tssr86917 9 106463380 to 106463412 32 + TSS region transcription start site region 86917
Tssr86918 9 106463513 to 106463551 38 + TSS region transcription start site region 86918
Tssr86919 9 106463783 to 106463816 33 + TSS region transcription start site region 86919
Gpr62 9 106463962 to 106465938 1976 - protein coding gene G protein-coupled receptor 62
Cpgi22268 9 106464486 to 106466092 1606 CpG island CpG island 22268
Tssr91318 9 106464885 to 106464895 10 - TSS region transcription start site region 91318
Tssr91319 9 106464902 to 106464922 20 - TSS region transcription start site region 91319
Tssr91320 9 106465287 to 106465302 15 - TSS region transcription start site region 91320
Tssr91321 9 106465965 to 106465990 25 - TSS region transcription start site region 91321
Parp3 9 106470322 to 106476949 6627 - protein coding gene poly (ADP-ribose) polymerase family, member 3
Tssr91322 9 106476134 to 106476157 23 - TSS region transcription start site region 91322
Tssr91323 9 106476159 to 106476196 37 - TSS region transcription start site region 91323
Tssr91324 9 106476319 to 106476355 36 - TSS region transcription start site region 91324
Tssr91325 9 106476372 to 106476384 12 - TSS region transcription start site region 91325
Tssr91326 9 106476590 to 106476675 85 - TSS region transcription start site region 91326
Cpgi22269 9 106476855 to 106477877 1022 CpG island CpG island 22269
Rrp9 9 106477259 to 106485422 8163 + protein coding gene RRP9, small subunit (SSU) processome component, homolog (yeast)
Tssr86920 9 106477263 to 106477274 11 + TSS region transcription start site region 86920
Tssr86921 9 106477279 to 106477352 73 + TSS region transcription start site region 86921
Cpgi22270 9 106481186 to 106481398 212 CpG island CpG island 22270
Tssr86922 9 106484481 to 106484493 12 + TSS region transcription start site region 86922
Tssr86923 9 106499936 to 106499939 3 + TSS region transcription start site region 86923
Tssr86924 9 106499954 to 106499965 11 + TSS region transcription start site region 86924
Tssr86925 9 106499967 to 106499972 5 + TSS region transcription start site region 86925
Iqcf1 9 106499967 to 106502250 2283 + protein coding gene IQ motif containing F1
Tssr86926 9 106499983 to 106499995 12 + TSS region transcription start site region 86926
Iqcf3 9 106504665 to 106561631 56966 - protein coding gene IQ motif containing F3
Tssr86927 9 106514572 to 106514602 30 + TSS region transcription start site region 86927
Iqcf5 9 106514573 to 106516003 1430 + protein coding gene IQ motif containing F5
Tssr86928 9 106514606 to 106514611 5 + TSS region transcription start site region 86928
Tssr91327 9 106544683 to 106544688 5 - TSS region transcription start site region 91327
Tssr91328 9 106550238 to 106550251 13 - TSS region transcription start site region 91328
Tssr91329 9 106550260 to 106550261 1 - TSS region transcription start site region 91329
D9Mit78 9 106553293 to 106553417 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 78
D9Dcr90 9 106553313 to 106553408 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 90
Tssr91330 9 106561617 to 106561636 19 - TSS region transcription start site region 91330
Tssr3006 9 106561649 to 106561653 4 - TSS region transcription start site region 3006
Tssr86929 9 106561712 to 106561718 6 + TSS region transcription start site region 86929
Tssr86930 9 106561746 to 106561753 7 + TSS region transcription start site region 86930
Iqcf4 9 106568319 to 106570967 2648 - protein coding gene IQ motif containing F4
Tssr91331 9 106570983 to 106571005 22 - TSS region transcription start site region 91331
Gm39420 9 106577639 to 106626384 48745 - lncRNA gene predicted gene, 39420
Gm39421 9 106580271 to 106583783 3512 + lncRNA gene predicted gene, 39421
D9Dcr91 9 106603645 to 106603743 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 91
D9Dcr92 9 106618512 to 106618607 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 92
D9Mit79 9 106622185 to 106622411 226 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 79
Iqcf6 9 106626582 to 106627675 1093 + protein coding gene IQ motif containing F6
Tssr86931 9 106626599 to 106626613 14 + TSS region transcription start site region 86931
Gm26185 9 106636318 to 106636583 265 + unclassified non-coding RNA gene predicted gene, 26185