Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:106458082-107019194

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcbp4 9 106453383 to 106464012 10629 + protein coding gene poly(rC) binding protein 4
Tssr86911 9 106460623 to 106460646 23 + TSS region transcription start site region 86911
Tssr86912 9 106460650 to 106460657 7 + TSS region transcription start site region 86912
Tssr86913 9 106460690 to 106460698 8 + TSS region transcription start site region 86913
Tssr86914 9 106461884 to 106461895 11 + TSS region transcription start site region 86914
Cpgi22267 9 106462486 to 106462646 160 CpG island CpG island 22267
Tssr86915 9 106463153 to 106463204 51 + TSS region transcription start site region 86915
Tssr86916 9 106463257 to 106463272 15 + TSS region transcription start site region 86916
Tssr86917 9 106463380 to 106463412 32 + TSS region transcription start site region 86917
Tssr86918 9 106463513 to 106463551 38 + TSS region transcription start site region 86918
Tssr86919 9 106463783 to 106463816 33 + TSS region transcription start site region 86919
Gpr62 9 106463962 to 106465938 1976 - protein coding gene G protein-coupled receptor 62
Cpgi22268 9 106464486 to 106466092 1606 CpG island CpG island 22268
Tssr91318 9 106464885 to 106464895 10 - TSS region transcription start site region 91318
Tssr91319 9 106464902 to 106464922 20 - TSS region transcription start site region 91319
Tssr91320 9 106465287 to 106465302 15 - TSS region transcription start site region 91320
Tssr91321 9 106465965 to 106465990 25 - TSS region transcription start site region 91321
Parp3 9 106470322 to 106476949 6627 - protein coding gene poly (ADP-ribose) polymerase family, member 3
Tssr91322 9 106476134 to 106476157 23 - TSS region transcription start site region 91322
Tssr91323 9 106476159 to 106476196 37 - TSS region transcription start site region 91323
Tssr91324 9 106476319 to 106476355 36 - TSS region transcription start site region 91324
Tssr91325 9 106476372 to 106476384 12 - TSS region transcription start site region 91325
Tssr91326 9 106476590 to 106476675 85 - TSS region transcription start site region 91326
Cpgi22269 9 106476855 to 106477877 1022 CpG island CpG island 22269
Rrp9 9 106477259 to 106485422 8163 + protein coding gene RRP9, small subunit (SSU) processome component, homolog (yeast)
Tssr86920 9 106477263 to 106477274 11 + TSS region transcription start site region 86920
Tssr86921 9 106477279 to 106477352 73 + TSS region transcription start site region 86921
Cpgi22270 9 106481186 to 106481398 212 CpG island CpG island 22270
Tssr86922 9 106484481 to 106484493 12 + TSS region transcription start site region 86922
Tssr86923 9 106499936 to 106499939 3 + TSS region transcription start site region 86923
Tssr86924 9 106499954 to 106499965 11 + TSS region transcription start site region 86924
Tssr86925 9 106499967 to 106499972 5 + TSS region transcription start site region 86925
Iqcf1 9 106499967 to 106502250 2283 + protein coding gene IQ motif containing F1
Tssr86926 9 106499983 to 106499995 12 + TSS region transcription start site region 86926
Iqcf3 9 106504665 to 106561631 56966 - protein coding gene IQ motif containing F3
Tssr86927 9 106514572 to 106514602 30 + TSS region transcription start site region 86927
Iqcf5 9 106514573 to 106516003 1430 + protein coding gene IQ motif containing F5
Tssr86928 9 106514606 to 106514611 5 + TSS region transcription start site region 86928
Tssr91327 9 106544683 to 106544688 5 - TSS region transcription start site region 91327
Tssr91328 9 106550238 to 106550251 13 - TSS region transcription start site region 91328
Tssr91329 9 106550260 to 106550261 1 - TSS region transcription start site region 91329
D9Mit78 9 106553293 to 106553417 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 78
D9Dcr90 9 106553313 to 106553408 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 90
Tssr91330 9 106561617 to 106561636 19 - TSS region transcription start site region 91330
Tssr3006 9 106561649 to 106561653 4 - TSS region transcription start site region 3006
Tssr86929 9 106561712 to 106561718 6 + TSS region transcription start site region 86929
Tssr86930 9 106561746 to 106561753 7 + TSS region transcription start site region 86930
Iqcf4 9 106568319 to 106570967 2648 - protein coding gene IQ motif containing F4
Tssr91331 9 106570983 to 106571005 22 - TSS region transcription start site region 91331
Gm39420 9 106577639 to 106626384 48745 - lncRNA gene predicted gene, 39420
Gm39421 9 106580271 to 106583783 3512 + lncRNA gene predicted gene, 39421
D9Dcr91 9 106603645 to 106603743 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 91
D9Dcr92 9 106618512 to 106618607 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 92
D9Mit79 9 106622185 to 106622411 226 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 79
Iqcf6 9 106626582 to 106627675 1093 + protein coding gene IQ motif containing F6
Tssr86931 9 106626599 to 106626613 14 + TSS region transcription start site region 86931
Gm26185 9 106636318 to 106636583 265 + unclassified non-coding RNA gene predicted gene, 26185
Gm28111 9 106640928 to 106643564 2636 + antisense lncRNA gene predicted gene 28111
Grm2 9 106644534 to 106656109 11575 - protein coding gene glutamate receptor, metabotropic 2
Cpgi22271 9 106647095 to 106648212 1117 CpG island CpG island 22271
Cpgi22272 9 106650422 to 106651188 766 CpG island CpG island 22272
Cpgi22273 9 106655603 to 106656449 846 CpG island CpG island 22273
Tssr91332 9 106656081 to 106656096 15 - TSS region transcription start site region 91332
Tssr86932 9 106656402 to 106656403 1 + TSS region transcription start site region 86932
Tex264 9 106658746 to 106685927 27181 - protein coding gene testis expressed gene 264
Tssr91333 9 106663246 to 106663270 24 - TSS region transcription start site region 91333
Tssr91334 9 106673677 to 106673699 22 - TSS region transcription start site region 91334
Tssr91335 9 106682170 to 106682185 15 - TSS region transcription start site region 91335
Tssr91336 9 106682199 to 106682214 15 - TSS region transcription start site region 91336
Tssr91337 9 106682236 to 106682249 13 - TSS region transcription start site region 91337
Tssr91338 9 106682360 to 106682364 4 - TSS region transcription start site region 91338
Cpgi22274 9 106684967 to 106686275 1308 CpG island CpG island 22274
Tssr91339 9 106685303 to 106685320 17 - TSS region transcription start site region 91339
Tssr91340 9 106685325 to 106685363 38 - TSS region transcription start site region 91340
Tssr91341 9 106685367 to 106685385 18 - TSS region transcription start site region 91341
Tssr91342 9 106685653 to 106685674 21 - TSS region transcription start site region 91342
Tssr91343 9 106685702 to 106685728 26 - TSS region transcription start site region 91343
Tssr91344 9 106685741 to 106685752 11 - TSS region transcription start site region 91344
Tssr91345 9 106685762 to 106685790 28 - TSS region transcription start site region 91345
Tssr91346 9 106685808 to 106685824 16 - TSS region transcription start site region 91346
Tssr91347 9 106685868 to 106685890 22 - TSS region transcription start site region 91347
Tssr91348 9 106685892 to 106685961 69 - TSS region transcription start site region 91348
Rad54l2 9 106688082 to 106789194 101112 - protein coding gene RAD54 like 2 (S. cerevisiae)
Tssr91349 9 106691106 to 106691110 4 - TSS region transcription start site region 91349
D9Dcr93 9 106729687 to 106729795 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 93
5730493B19Rik 9 106738530 to 106740299 1769 unclassified gene RIKEN cDNA 5730493B19 gene
D9Dcr94 9 106783303 to 106783402 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 94
Cpgi22275 9 106788658 to 106789267 609 CpG island CpG island 22275
Tssr91350 9 106789130 to 106789208 78 - TSS region transcription start site region 91350
Gm22384 9 106812495 to 106812598 103 - snRNA gene predicted gene, 22384
Tssr86933 9 106814125 to 106814133 8 + TSS region transcription start site region 86933
Tssr86934 9 106814144 to 106814156 12 + TSS region transcription start site region 86934
Cpgi22276 9 106821565 to 106822716 1151 CpG island CpG island 22276
Dcaf1 9 106821874 to 106880992 59118 + protein coding gene DDB1 and CUL4 associated factor 1
Tssr86935 9 106821894 to 106821994 100 + TSS region transcription start site region 86935
Tssr86936 9 106821999 to 106822016 17 + TSS region transcription start site region 86936
Tssr86937 9 106822023 to 106822034 11 + TSS region transcription start site region 86937
Tssr86938 9 106839698 to 106839701 3 + TSS region transcription start site region 86938
Gm37612 9 106870674 to 106871501 827 + sense intronic lncRNA gene predicted gene, 37612
Tssr86939 9 106877937 to 106877939 2 + TSS region transcription start site region 86939
Tssr86940 9 106880109 to 106880131 22 + TSS region transcription start site region 86940
Rbm15b 9 106883985 to 106887000 3015 - protein coding gene RNA binding motif protein 15B
Cpgi22277 9 106885137 to 106887677 2540 CpG island CpG island 22277
Tssr86941 9 106886421 to 106886437 16 + TSS region transcription start site region 86941
Tssr91351 9 106887059 to 106887094 35 - TSS region transcription start site region 91351
Tssr91352 9 106887103 to 106887112 9 - TSS region transcription start site region 91352
Manf 9 106887415 to 106891938 4523 - protein coding gene mesencephalic astrocyte-derived neurotrophic factor
Tssr86942 9 106890181 to 106890211 30 + TSS region transcription start site region 86942
Cpgi22278 9 106891364 to 106892724 1360 CpG island CpG island 22278
Tssr91353 9 106891366 to 106891373 7 - TSS region transcription start site region 91353
Tssr91354 9 106891380 to 106891391 11 - TSS region transcription start site region 91354
Tssr91355 9 106891394 to 106891397 3 - TSS region transcription start site region 91355
Tssr91356 9 106891401 to 106891438 37 - TSS region transcription start site region 91356
4930524O07Rik 9 106891547 to 106895182 3635 + antisense lncRNA gene RIKEN cDNA 4930524O07 gene
Tssr91357 9 106891908 to 106891920 12 - TSS region transcription start site region 91357
Tssr91358 9 106891931 to 106891947 16 - TSS region transcription start site region 91358
Tssr91359 9 106891965 to 106891970 5 - TSS region transcription start site region 91359
Tssr86943 9 106892114 to 106892123 9 + TSS region transcription start site region 86943
Tssr86944 9 106892450 to 106892475 25 + TSS region transcription start site region 86944
Tssr86945 9 106892476 to 106892487 11 + TSS region transcription start site region 86945
Dock3 9 106892825 to 107231909 339084 - protein coding gene dedicator of cyto-kinesis 3
Gm18542 9 106924970 to 106925887 917 + pseudogene predicted gene, 18542
D9Dcr95 9 106929925 to 106930020 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 95
Tssr91360 9 106979958 to 106979961 3 - TSS region transcription start site region 91360