Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:106386599-106866613

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33616 9 106389272 to 106422394 33122 - lncRNA gene predicted gene, 33616
Tssr3005 9 106396645 to 106396648 3 + TSS region transcription start site region 3005
Tssr91309 9 106399703 to 106399705 2 - TSS region transcription start site region 91309
Gm46131 9 106405498 to 106414601 9103 - lncRNA gene predicted gene, 46131
D9Mit51 9 106412277 to 106412396 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 51
Psl1 9 106412277 to 106412396 119 QTL promotion susceptibility QTL 1
D9Dcr88 9 106412309 to 106412394 85 DNA segment DNA segment, Chr 9, Derry C. Roopenian 88
Cpgi22261 9 106418289 to 106418615 326 CpG island CpG island 22261
Cpgi22262 9 106429191 to 106430107 916 CpG island CpG island 22262
Tssr86892 9 106429386 to 106429397 11 + TSS region transcription start site region 86892
Tssr86893 9 106429399 to 106429457 58 + TSS region transcription start site region 86893
Rpl29 9 106429454 to 106431568 2114 + protein coding gene ribosomal protein L29
Tssr86894 9 106429464 to 106429479 15 + TSS region transcription start site region 86894
Tssr86895 9 106429537 to 106429548 11 + TSS region transcription start site region 86895
Tssr86896 9 106429549 to 106429602 53 + TSS region transcription start site region 86896
Acy1 9 106432981 to 106438236 5255 - protein coding gene aminoacylase 1
Cpgi22263 9 106438064 to 106439004 940 CpG island CpG island 22263
Tssr91310 9 106438169 to 106438198 29 - TSS region transcription start site region 91310
Tssr91311 9 106438207 to 106438227 20 - TSS region transcription start site region 91311
Tssr91312 9 106438331 to 106438391 60 - TSS region transcription start site region 91312
Abhd14a 9 106440051 to 106447678 7627 - protein coding gene abhydrolase domain containing 14A
D9Dcr89 9 106440494 to 106440593 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 89
Cpgi22264 9 106447271 to 106447829 558 CpG island CpG island 22264
Tssr91313 9 106447548 to 106447582 34 - TSS region transcription start site region 91313
Tssr91314 9 106447584 to 106447689 105 - TSS region transcription start site region 91314
Tssr91315 9 106447692 to 106447706 14 - TSS region transcription start site region 91315
Tssr86897 9 106447753 to 106447780 27 + TSS region transcription start site region 86897
Abhd14b 9 106448236 to 106452923 4687 + protein coding gene abhydrolase domain containing 14b
Cpgi22265 9 106448538 to 106449079 541 CpG island CpG island 22265
Tssr86898 9 106448629 to 106448655 26 + TSS region transcription start site region 86898
Tssr86899 9 106448660 to 106448683 23 + TSS region transcription start site region 86899
Tssr86900 9 106452079 to 106452097 18 + TSS region transcription start site region 86900
Tssr86901 9 106452147 to 106452165 18 + TSS region transcription start site region 86901
Tssr86902 9 106452178 to 106452194 16 + TSS region transcription start site region 86902
Gm28959 9 106452181 to 106452918 737 - antisense lncRNA gene predicted gene 28959
Tssr91316 9 106453037 to 106453070 33 - TSS region transcription start site region 91316
Tssr86903 9 106453241 to 106453276 35 + TSS region transcription start site region 86903
Cpgi22266 9 106453300 to 106454474 1174 CpG island CpG island 22266
Tssr86904 9 106453353 to 106453413 60 + TSS region transcription start site region 86904
Pcbp4 9 106453383 to 106464012 10629 + protein coding gene poly(rC) binding protein 4
Tssr86905 9 106453414 to 106453435 21 + TSS region transcription start site region 86905
Tssr91317 9 106453654 to 106453708 54 - TSS region transcription start site region 91317
Tssr86906 9 106453880 to 106453911 31 + TSS region transcription start site region 86906
Tssr86907 9 106453912 to 106453933 21 + TSS region transcription start site region 86907
Tssr86908 9 106453934 to 106453945 11 + TSS region transcription start site region 86908
Tssr86909 9 106453947 to 106453961 14 + TSS region transcription start site region 86909
Tssr86910 9 106454247 to 106454258 11 + TSS region transcription start site region 86910
Tssr86911 9 106460623 to 106460646 23 + TSS region transcription start site region 86911
Tssr86912 9 106460650 to 106460657 7 + TSS region transcription start site region 86912
Tssr86913 9 106460690 to 106460698 8 + TSS region transcription start site region 86913
Tssr86914 9 106461884 to 106461895 11 + TSS region transcription start site region 86914
Cpgi22267 9 106462486 to 106462646 160 CpG island CpG island 22267
Tssr86915 9 106463153 to 106463204 51 + TSS region transcription start site region 86915
Tssr86916 9 106463257 to 106463272 15 + TSS region transcription start site region 86916
Tssr86917 9 106463380 to 106463412 32 + TSS region transcription start site region 86917
Tssr86918 9 106463513 to 106463551 38 + TSS region transcription start site region 86918
Tssr86919 9 106463783 to 106463816 33 + TSS region transcription start site region 86919
Gpr62 9 106463962 to 106465938 1976 - protein coding gene G protein-coupled receptor 62
Cpgi22268 9 106464486 to 106466092 1606 CpG island CpG island 22268
Tssr91318 9 106464885 to 106464895 10 - TSS region transcription start site region 91318
Tssr91319 9 106464902 to 106464922 20 - TSS region transcription start site region 91319
Tssr91320 9 106465287 to 106465302 15 - TSS region transcription start site region 91320
Tssr91321 9 106465965 to 106465990 25 - TSS region transcription start site region 91321
Parp3 9 106470322 to 106476949 6627 - protein coding gene poly (ADP-ribose) polymerase family, member 3
Tssr91322 9 106476134 to 106476157 23 - TSS region transcription start site region 91322
Tssr91323 9 106476159 to 106476196 37 - TSS region transcription start site region 91323
Tssr91324 9 106476319 to 106476355 36 - TSS region transcription start site region 91324
Tssr91325 9 106476372 to 106476384 12 - TSS region transcription start site region 91325
Tssr91326 9 106476590 to 106476675 85 - TSS region transcription start site region 91326
Cpgi22269 9 106476855 to 106477877 1022 CpG island CpG island 22269
Rrp9 9 106477259 to 106485422 8163 + protein coding gene RRP9, small subunit (SSU) processome component, homolog (yeast)
Tssr86920 9 106477263 to 106477274 11 + TSS region transcription start site region 86920
Tssr86921 9 106477279 to 106477352 73 + TSS region transcription start site region 86921
Cpgi22270 9 106481186 to 106481398 212 CpG island CpG island 22270
Tssr86922 9 106484481 to 106484493 12 + TSS region transcription start site region 86922
Tssr86923 9 106499936 to 106499939 3 + TSS region transcription start site region 86923
Tssr86924 9 106499954 to 106499965 11 + TSS region transcription start site region 86924
Tssr86925 9 106499967 to 106499972 5 + TSS region transcription start site region 86925
Iqcf1 9 106499967 to 106502250 2283 + protein coding gene IQ motif containing F1
Tssr86926 9 106499983 to 106499995 12 + TSS region transcription start site region 86926
Iqcf3 9 106504665 to 106561631 56966 - protein coding gene IQ motif containing F3
Tssr86927 9 106514572 to 106514602 30 + TSS region transcription start site region 86927
Iqcf5 9 106514573 to 106516003 1430 + protein coding gene IQ motif containing F5
Tssr86928 9 106514606 to 106514611 5 + TSS region transcription start site region 86928
Tssr91327 9 106544683 to 106544688 5 - TSS region transcription start site region 91327
Tssr91328 9 106550238 to 106550251 13 - TSS region transcription start site region 91328
Tssr91329 9 106550260 to 106550261 1 - TSS region transcription start site region 91329
D9Mit78 9 106553293 to 106553417 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 78
D9Dcr90 9 106553313 to 106553408 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 90
Tssr91330 9 106561617 to 106561636 19 - TSS region transcription start site region 91330
Tssr3006 9 106561649 to 106561653 4 - TSS region transcription start site region 3006
Tssr86929 9 106561712 to 106561718 6 + TSS region transcription start site region 86929
Tssr86930 9 106561746 to 106561753 7 + TSS region transcription start site region 86930
Iqcf4 9 106568319 to 106570967 2648 - protein coding gene IQ motif containing F4
Tssr91331 9 106570983 to 106571005 22 - TSS region transcription start site region 91331
Gm39420 9 106577639 to 106626384 48745 - lncRNA gene predicted gene, 39420
Gm39421 9 106580271 to 106583783 3512 + lncRNA gene predicted gene, 39421
D9Dcr91 9 106603645 to 106603743 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 91
D9Dcr92 9 106618512 to 106618607 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 92
D9Mit79 9 106622185 to 106622411 226 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 79
Iqcf6 9 106626582 to 106627675 1093 + protein coding gene IQ motif containing F6
Tssr86931 9 106626599 to 106626613 14 + TSS region transcription start site region 86931
Gm26185 9 106636318 to 106636583 265 + unclassified non-coding RNA gene predicted gene, 26185
Gm28111 9 106640928 to 106643564 2636 + antisense lncRNA gene predicted gene 28111
Grm2 9 106644534 to 106656109 11575 - protein coding gene glutamate receptor, metabotropic 2
Cpgi22271 9 106647095 to 106648212 1117 CpG island CpG island 22271
Cpgi22272 9 106650422 to 106651188 766 CpG island CpG island 22272
Cpgi22273 9 106655603 to 106656449 846 CpG island CpG island 22273
Tssr91332 9 106656081 to 106656096 15 - TSS region transcription start site region 91332
Tssr86932 9 106656402 to 106656403 1 + TSS region transcription start site region 86932
Tex264 9 106658746 to 106685927 27181 - protein coding gene testis expressed gene 264
Tssr91333 9 106663246 to 106663270 24 - TSS region transcription start site region 91333
Tssr91334 9 106673677 to 106673699 22 - TSS region transcription start site region 91334
Tssr91335 9 106682170 to 106682185 15 - TSS region transcription start site region 91335
Tssr91336 9 106682199 to 106682214 15 - TSS region transcription start site region 91336
Tssr91337 9 106682236 to 106682249 13 - TSS region transcription start site region 91337
Tssr91338 9 106682360 to 106682364 4 - TSS region transcription start site region 91338
Cpgi22274 9 106684967 to 106686275 1308 CpG island CpG island 22274
Tssr91339 9 106685303 to 106685320 17 - TSS region transcription start site region 91339
Tssr91340 9 106685325 to 106685363 38 - TSS region transcription start site region 91340
Tssr91341 9 106685367 to 106685385 18 - TSS region transcription start site region 91341
Tssr91342 9 106685653 to 106685674 21 - TSS region transcription start site region 91342
Tssr91343 9 106685702 to 106685728 26 - TSS region transcription start site region 91343
Tssr91344 9 106685741 to 106685752 11 - TSS region transcription start site region 91344
Tssr91345 9 106685762 to 106685790 28 - TSS region transcription start site region 91345
Tssr91346 9 106685808 to 106685824 16 - TSS region transcription start site region 91346
Tssr91347 9 106685868 to 106685890 22 - TSS region transcription start site region 91347
Tssr91348 9 106685892 to 106685961 69 - TSS region transcription start site region 91348
Rad54l2 9 106688082 to 106789194 101112 - protein coding gene RAD54 like 2 (S. cerevisiae)
Tssr91349 9 106691106 to 106691110 4 - TSS region transcription start site region 91349
D9Dcr93 9 106729687 to 106729795 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 93
5730493B19Rik 9 106738530 to 106740299 1769 unclassified gene RIKEN cDNA 5730493B19 gene
D9Dcr94 9 106783303 to 106783402 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 94
Cpgi22275 9 106788658 to 106789267 609 CpG island CpG island 22275
Tssr91350 9 106789130 to 106789208 78 - TSS region transcription start site region 91350
Gm22384 9 106812495 to 106812598 103 - snRNA gene predicted gene, 22384
Tssr86933 9 106814125 to 106814133 8 + TSS region transcription start site region 86933
Tssr86934 9 106814144 to 106814156 12 + TSS region transcription start site region 86934
Cpgi22276 9 106821565 to 106822716 1151 CpG island CpG island 22276
Dcaf1 9 106821874 to 106880992 59118 + protein coding gene DDB1 and CUL4 associated factor 1
Tssr86935 9 106821894 to 106821994 100 + TSS region transcription start site region 86935
Tssr86936 9 106821999 to 106822016 17 + TSS region transcription start site region 86936
Tssr86937 9 106822023 to 106822034 11 + TSS region transcription start site region 86937
Tssr86938 9 106839698 to 106839701 3 + TSS region transcription start site region 86938