Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:106272943-106462976

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33564 9 106260718 to 106276012 15294 + lncRNA gene predicted gene, 33564
Cpgi22259 9 106280864 to 106281733 869 CpG island CpG island 22259
Tssr86879 9 106281012 to 106281042 30 + TSS region transcription start site region 86879
Poc1a 9 106281022 to 106349891 68869 + protein coding gene POC1 centriolar protein A
Tssr86880 9 106281350 to 106281410 60 + TSS region transcription start site region 86880
Alpq8 9 106284925 to 106284925 0 QTL alcohol preference QTL 8
Gm29123 9 106309944 to 106335833 25889 - antisense lncRNA gene predicted gene 29123
Tssr86881 9 106313433 to 106313441 8 + TSS region transcription start site region 86881
Tssr91308 9 106314338 to 106314342 4 - TSS region transcription start site region 91308
Tssr86882 9 106327716 to 106327730 14 + TSS region transcription start site region 86882
Tssr86883 9 106329439 to 106329441 2 + TSS region transcription start site region 86883
Cpgi22260 9 106367492 to 106369628 2136 CpG island CpG island 22260
Tssr86884 9 106367943 to 106367976 33 + TSS region transcription start site region 86884
Tssr86885 9 106368551 to 106368572 21 + TSS region transcription start site region 86885
Tssr86886 9 106368594 to 106368640 46 + TSS region transcription start site region 86886
Dusp7 9 106368632 to 106375724 7092 + protein coding gene dual specificity phosphatase 7
Tssr86887 9 106370823 to 106370855 32 + TSS region transcription start site region 86887
Tssr86888 9 106372083 to 106372105 22 + TSS region transcription start site region 86888
Tssr86889 9 106374207 to 106374219 12 + TSS region transcription start site region 86889
Tssr86890 9 106374304 to 106374344 40 + TSS region transcription start site region 86890
Tssr86891 9 106374425 to 106374429 4 + TSS region transcription start site region 86891
Gm33616 9 106389272 to 106422394 33122 - lncRNA gene predicted gene, 33616
Tssr3005 9 106396645 to 106396648 3 + TSS region transcription start site region 3005
Tssr91309 9 106399703 to 106399705 2 - TSS region transcription start site region 91309
Gm46131 9 106405498 to 106414601 9103 - lncRNA gene predicted gene, 46131
D9Mit51 9 106412277 to 106412396 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 51
Psl1 9 106412277 to 106412396 119 QTL promotion susceptibility QTL 1
D9Dcr88 9 106412309 to 106412394 85 DNA segment DNA segment, Chr 9, Derry C. Roopenian 88
Cpgi22261 9 106418289 to 106418615 326 CpG island CpG island 22261
Cpgi22262 9 106429191 to 106430107 916 CpG island CpG island 22262
Tssr86892 9 106429386 to 106429397 11 + TSS region transcription start site region 86892
Tssr86893 9 106429399 to 106429457 58 + TSS region transcription start site region 86893
Rpl29 9 106429454 to 106431568 2114 + protein coding gene ribosomal protein L29
Tssr86894 9 106429464 to 106429479 15 + TSS region transcription start site region 86894
Tssr86895 9 106429537 to 106429548 11 + TSS region transcription start site region 86895
Tssr86896 9 106429549 to 106429602 53 + TSS region transcription start site region 86896
Acy1 9 106432981 to 106438236 5255 - protein coding gene aminoacylase 1
Cpgi22263 9 106438064 to 106439004 940 CpG island CpG island 22263
Tssr91310 9 106438169 to 106438198 29 - TSS region transcription start site region 91310
Tssr91311 9 106438207 to 106438227 20 - TSS region transcription start site region 91311
Tssr91312 9 106438331 to 106438391 60 - TSS region transcription start site region 91312
Abhd14a 9 106440051 to 106447678 7627 - protein coding gene abhydrolase domain containing 14A
D9Dcr89 9 106440494 to 106440593 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 89
Cpgi22264 9 106447271 to 106447829 558 CpG island CpG island 22264
Tssr91313 9 106447548 to 106447582 34 - TSS region transcription start site region 91313
Tssr91314 9 106447584 to 106447689 105 - TSS region transcription start site region 91314
Tssr91315 9 106447692 to 106447706 14 - TSS region transcription start site region 91315
Tssr86897 9 106447753 to 106447780 27 + TSS region transcription start site region 86897
Abhd14b 9 106448236 to 106452923 4687 + protein coding gene abhydrolase domain containing 14b
Cpgi22265 9 106448538 to 106449079 541 CpG island CpG island 22265
Tssr86898 9 106448629 to 106448655 26 + TSS region transcription start site region 86898
Tssr86899 9 106448660 to 106448683 23 + TSS region transcription start site region 86899
Tssr86900 9 106452079 to 106452097 18 + TSS region transcription start site region 86900
Tssr86901 9 106452147 to 106452165 18 + TSS region transcription start site region 86901
Tssr86902 9 106452178 to 106452194 16 + TSS region transcription start site region 86902
Gm28959 9 106452181 to 106452918 737 - antisense lncRNA gene predicted gene 28959
Tssr91316 9 106453037 to 106453070 33 - TSS region transcription start site region 91316
Tssr86903 9 106453241 to 106453276 35 + TSS region transcription start site region 86903
Cpgi22266 9 106453300 to 106454474 1174 CpG island CpG island 22266
Tssr86904 9 106453353 to 106453413 60 + TSS region transcription start site region 86904
Pcbp4 9 106453383 to 106464012 10629 + protein coding gene poly(rC) binding protein 4
Tssr86905 9 106453414 to 106453435 21 + TSS region transcription start site region 86905
Tssr91317 9 106453654 to 106453708 54 - TSS region transcription start site region 91317
Tssr86906 9 106453880 to 106453911 31 + TSS region transcription start site region 86906
Tssr86907 9 106453912 to 106453933 21 + TSS region transcription start site region 86907
Tssr86908 9 106453934 to 106453945 11 + TSS region transcription start site region 86908
Tssr86909 9 106453947 to 106453961 14 + TSS region transcription start site region 86909
Tssr86910 9 106454247 to 106454258 11 + TSS region transcription start site region 86910
Tssr86911 9 106460623 to 106460646 23 + TSS region transcription start site region 86911
Tssr86912 9 106460650 to 106460657 7 + TSS region transcription start site region 86912
Tssr86913 9 106460690 to 106460698 8 + TSS region transcription start site region 86913
Tssr86914 9 106461884 to 106461895 11 + TSS region transcription start site region 86914
Cpgi22267 9 106462486 to 106462646 160 CpG island CpG island 22267