Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:106219944-106425833

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlr9 9 106222598 to 106226876 4278 + protein coding gene toll-like receptor 9
Tssr86868 9 106222598 to 106222629 31 + TSS region transcription start site region 86868
Tssr86869 9 106222638 to 106222666 28 + TSS region transcription start site region 86869
Tssr86870 9 106223522 to 106223544 22 + TSS region transcription start site region 86870
Tssr86871 9 106223662 to 106223723 61 + TSS region transcription start site region 86871
Tssr91299 9 106223755 to 106223766 11 - TSS region transcription start site region 91299
Tssr86872 9 106223809 to 106223834 25 + TSS region transcription start site region 86872
Tssr86873 9 106223922 to 106223934 12 + TSS region transcription start site region 86873
Tssr86874 9 106224088 to 106224112 24 + TSS region transcription start site region 86874
Tssr86875 9 106224282 to 106224301 19 + TSS region transcription start site region 86875
Tssr86876 9 106224313 to 106224325 12 + TSS region transcription start site region 86876
Cpgi22257 9 106225650 to 106226662 1012 CpG island CpG island 22257
Alas1 9 106233455 to 106247954 14499 - protein coding gene aminolevulinic acid synthase 1
Tssr91300 9 106235485 to 106235504 19 - TSS region transcription start site region 91300
Tssr91301 9 106243295 to 106243307 12 - TSS region transcription start site region 91301
Cpgi22258 9 106247399 to 106248540 1141 CpG island CpG island 22258
Tssr91302 9 106247427 to 106247459 32 - TSS region transcription start site region 91302
Tssr91303 9 106247717 to 106247734 17 - TSS region transcription start site region 91303
Tssr91304 9 106247860 to 106247874 14 - TSS region transcription start site region 91304
Tssr91305 9 106247903 to 106247912 9 - TSS region transcription start site region 91305
Tssr86877 9 106247930 to 106247960 30 + TSS region transcription start site region 86877
4930500F10Rik 9 106247960 to 106249413 1453 + antisense lncRNA gene RIKEN cDNA 4930500F10 gene
Tssr91306 9 106251016 to 106251031 15 - TSS region transcription start site region 91306
Gm33564 9 106260718 to 106276012 15294 + lncRNA gene predicted gene, 33564
Tssr91307 9 106269425 to 106269461 36 - TSS region transcription start site region 91307
Tssr86878 9 106270962 to 106270970 8 + TSS region transcription start site region 86878
Cpgi22259 9 106280864 to 106281733 869 CpG island CpG island 22259
Tssr86879 9 106281012 to 106281042 30 + TSS region transcription start site region 86879
Poc1a 9 106281022 to 106349891 68869 + protein coding gene POC1 centriolar protein A
Tssr86880 9 106281350 to 106281410 60 + TSS region transcription start site region 86880
Alpq8 9 106284925 to 106284925 0 QTL alcohol preference QTL 8
Gm29123 9 106309944 to 106335833 25889 - antisense lncRNA gene predicted gene 29123
Tssr86881 9 106313433 to 106313441 8 + TSS region transcription start site region 86881
Tssr91308 9 106314338 to 106314342 4 - TSS region transcription start site region 91308
Tssr86882 9 106327716 to 106327730 14 + TSS region transcription start site region 86882
Tssr86883 9 106329439 to 106329441 2 + TSS region transcription start site region 86883
Cpgi22260 9 106367492 to 106369628 2136 CpG island CpG island 22260
Tssr86884 9 106367943 to 106367976 33 + TSS region transcription start site region 86884
Tssr86885 9 106368551 to 106368572 21 + TSS region transcription start site region 86885
Tssr86886 9 106368594 to 106368640 46 + TSS region transcription start site region 86886
Dusp7 9 106368632 to 106375724 7092 + protein coding gene dual specificity phosphatase 7
Tssr86887 9 106370823 to 106370855 32 + TSS region transcription start site region 86887
Tssr86888 9 106372083 to 106372105 22 + TSS region transcription start site region 86888
Tssr86889 9 106374207 to 106374219 12 + TSS region transcription start site region 86889
Tssr86890 9 106374304 to 106374344 40 + TSS region transcription start site region 86890
Tssr86891 9 106374425 to 106374429 4 + TSS region transcription start site region 86891
Gm33616 9 106389272 to 106422394 33122 - lncRNA gene predicted gene, 33616
Tssr3005 9 106396645 to 106396648 3 + TSS region transcription start site region 3005
Tssr91309 9 106399703 to 106399705 2 - TSS region transcription start site region 91309
Gm46131 9 106405498 to 106414601 9103 - lncRNA gene predicted gene, 46131
Psl1 9 106412277 to 106412396 119 QTL promotion susceptibility QTL 1
D9Mit51 9 106412277 to 106412396 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 51
D9Dcr88 9 106412309 to 106412394 85 DNA segment DNA segment, Chr 9, Derry C. Roopenian 88
Cpgi22261 9 106418289 to 106418615 326 CpG island CpG island 22261