Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:105948840-106408927

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col6a5 9 105856078 to 105960643 104565 - protein coding gene collagen, type VI, alpha 5
Tssr91272 9 105960642 to 105960659 17 - TSS region transcription start site region 91272
Tssr91273 9 105960677 to 105960688 11 - TSS region transcription start site region 91273
Col6a4 9 105990109 to 106096828 106719 - protein coding gene collagen, type VI, alpha 4
Cpgi22249 9 106000282 to 106000620 338 CpG island CpG island 22249
Gm24631 9 106001718 to 106001798 80 + snRNA gene predicted gene, 24631
Gm47575 9 106013530 to 106014653 1123 + antisense lncRNA gene predicted gene, 47575
Tssr91274 9 106040772 to 106040812 40 - TSS region transcription start site region 91274
Tssr91275 9 106066498 to 106066515 17 - TSS region transcription start site region 91275
Tssr91276 9 106080204 to 106080216 12 - TSS region transcription start site region 91276
Tssr91277 9 106080314 to 106080321 7 - TSS region transcription start site region 91277
Gm36993 9 106095474 to 106098453 2979 + unclassified gene predicted gene, 36993
Tssr91278 9 106096739 to 106096744 5 - TSS region transcription start site region 91278
Tssr91279 9 106096776 to 106096791 15 - TSS region transcription start site region 91279
Tssr91280 9 106096811 to 106096823 12 - TSS region transcription start site region 91280
Cpgi22250 9 106099434 to 106099654 220 CpG island CpG island 22250
Tssr91281 9 106106181 to 106106207 26 - TSS region transcription start site region 91281
Tssr91282 9 106112482 to 106112486 4 - TSS region transcription start site region 91282
Gm9451 9 106121296 to 106121899 603 - pseudogene predicted gene 9451
Gm29208 9 106122079 to 106128095 6016 - lincRNA gene predicted gene 29208
Tssr3002 9 106127088 to 106127094 6 - TSS region transcription start site region 3002
Tssr91283 9 106133513 to 106133519 6 - TSS region transcription start site region 91283
Tssr91284 9 106133577 to 106133587 10 - TSS region transcription start site region 91284
Tssr91285 9 106133628 to 106133635 7 - TSS region transcription start site region 91285
Tssr91286 9 106136014 to 106136019 5 - TSS region transcription start site region 91286
Tssr91287 9 106136049 to 106136068 19 - TSS region transcription start site region 91287
Tssr91288 9 106136358 to 106136362 4 - TSS region transcription start site region 91288
Tssr91289 9 106136365 to 106136373 8 - TSS region transcription start site region 91289
Tssr91290 9 106136375 to 106136389 14 - TSS region transcription start site region 91290
Tssr91291 9 106136397 to 106136401 4 - TSS region transcription start site region 91291
Tssr86850 9 106147942 to 106147955 13 + TSS region transcription start site region 86850
Tssr86851 9 106147967 to 106147983 16 + TSS region transcription start site region 86851
Tssr86852 9 106148308 to 106148332 24 + TSS region transcription start site region 86852
Cpgi22251 9 106148677 to 106149220 543 CpG island CpG island 22251
D030055H07Rik 9 106148687 to 106160201 11514 + antisense lncRNA gene RIKEN cDNA D030055H07 gene
Tssr86853 9 106148692 to 106148712 20 + TSS region transcription start site region 86853
Glyctk 9 106152857 to 106158138 5281 - protein coding gene glycerate kinase
Mir135a-1 9 106154124 to 106154213 89 + miRNA gene microRNA 135a-1
Tssr91292 9 106158109 to 106158132 23 - TSS region transcription start site region 91292
Tssr91293 9 106158134 to 106158141 7 - TSS region transcription start site region 91293
Cpgi22252 9 106159757 to 106160194 437 CpG island CpG island 22252
Tssr91294 9 106159894 to 106159916 22 - TSS region transcription start site region 91294
Tssr3003 9 106160036 to 106160067 31 + TSS region transcription start site region 3003
Tssr91295 9 106160120 to 106160143 23 - TSS region transcription start site region 91295
Tssr86854 9 106165997 to 106166009 12 + TSS region transcription start site region 86854
Cpgi22253 9 106170546 to 106171891 1345 CpG island CpG island 22253
Tssr86855 9 106170885 to 106170892 7 + TSS region transcription start site region 86855
Tssr86856 9 106170918 to 106170953 35 + TSS region transcription start site region 86856
Wdr82 9 106170928 to 106191139 20211 + protein coding gene WD repeat domain containing 82
Tssr86857 9 106171180 to 106171226 46 + TSS region transcription start site region 86857
Tssr86858 9 106171312 to 106171331 19 + TSS region transcription start site region 86858
Tssr86859 9 106178086 to 106178089 3 + TSS region transcription start site region 86859
Mirlet7g 9 106178840 to 106178927 87 + miRNA gene microRNA let7g
Tssr86860 9 106178923 to 106178926 3 + TSS region transcription start site region 86860
Tssr86861 9 106179745 to 106179757 12 + TSS region transcription start site region 86861
Tssr86862 9 106189248 to 106189252 4 + TSS region transcription start site region 86862
Ppm1m 9 106194953 to 106199233 4280 - protein coding gene protein phosphatase 1M
Tssr3004 9 106197468 to 106197476 8 - TSS region transcription start site region 3004
Cpgi22254 9 106198661 to 106199802 1141 CpG island CpG island 22254
Tssr91296 9 106199138 to 106199155 17 - TSS region transcription start site region 91296
Tssr91297 9 106199190 to 106199246 56 - TSS region transcription start site region 91297
Tssr91298 9 106199253 to 106199286 33 - TSS region transcription start site region 91298
Cpgi22255 9 106202655 to 106203606 951 CpG island CpG island 22255
Tssr86863 9 106203108 to 106203171 63 + TSS region transcription start site region 86863
Twf2 9 106203108 to 106215387 12279 + protein coding gene twinfilin actin binding protein 2
Tssr86864 9 106203190 to 106203201 11 + TSS region transcription start site region 86864
Tssr86865 9 106206789 to 106206804 15 + TSS region transcription start site region 86865
Tssr86866 9 106211599 to 106211620 21 + TSS region transcription start site region 86866
Cpgi22256 9 106211752 to 106212194 442 CpG island CpG island 22256
Tssr86867 9 106212174 to 106212204 30 + TSS region transcription start site region 86867
Tssr86868 9 106222598 to 106222629 31 + TSS region transcription start site region 86868
Tlr9 9 106222598 to 106226876 4278 + protein coding gene toll-like receptor 9
Tssr86869 9 106222638 to 106222666 28 + TSS region transcription start site region 86869
Tssr86870 9 106223522 to 106223544 22 + TSS region transcription start site region 86870
Tssr86871 9 106223662 to 106223723 61 + TSS region transcription start site region 86871
Tssr91299 9 106223755 to 106223766 11 - TSS region transcription start site region 91299
Tssr86872 9 106223809 to 106223834 25 + TSS region transcription start site region 86872
Tssr86873 9 106223922 to 106223934 12 + TSS region transcription start site region 86873
Tssr86874 9 106224088 to 106224112 24 + TSS region transcription start site region 86874
Tssr86875 9 106224282 to 106224301 19 + TSS region transcription start site region 86875
Tssr86876 9 106224313 to 106224325 12 + TSS region transcription start site region 86876
Cpgi22257 9 106225650 to 106226662 1012 CpG island CpG island 22257
Alas1 9 106233455 to 106247954 14499 - protein coding gene aminolevulinic acid synthase 1
Tssr91300 9 106235485 to 106235504 19 - TSS region transcription start site region 91300
Tssr91301 9 106243295 to 106243307 12 - TSS region transcription start site region 91301
Cpgi22258 9 106247399 to 106248540 1141 CpG island CpG island 22258
Tssr91302 9 106247427 to 106247459 32 - TSS region transcription start site region 91302
Tssr91303 9 106247717 to 106247734 17 - TSS region transcription start site region 91303
Tssr91304 9 106247860 to 106247874 14 - TSS region transcription start site region 91304
Tssr91305 9 106247903 to 106247912 9 - TSS region transcription start site region 91305
Tssr86877 9 106247930 to 106247960 30 + TSS region transcription start site region 86877
4930500F10Rik 9 106247960 to 106249413 1453 + antisense lncRNA gene RIKEN cDNA 4930500F10 gene
Tssr91306 9 106251016 to 106251031 15 - TSS region transcription start site region 91306
Gm33564 9 106260718 to 106276012 15294 + lncRNA gene predicted gene, 33564
Tssr91307 9 106269425 to 106269461 36 - TSS region transcription start site region 91307
Tssr86878 9 106270962 to 106270970 8 + TSS region transcription start site region 86878
Cpgi22259 9 106280864 to 106281733 869 CpG island CpG island 22259
Tssr86879 9 106281012 to 106281042 30 + TSS region transcription start site region 86879
Poc1a 9 106281022 to 106349891 68869 + protein coding gene POC1 centriolar protein A
Tssr86880 9 106281350 to 106281410 60 + TSS region transcription start site region 86880
Alpq8 9 106284925 to 106284925 0 QTL alcohol preference QTL 8
Gm29123 9 106309944 to 106335833 25889 - antisense lncRNA gene predicted gene 29123
Tssr86881 9 106313433 to 106313441 8 + TSS region transcription start site region 86881
Tssr91308 9 106314338 to 106314342 4 - TSS region transcription start site region 91308
Tssr86882 9 106327716 to 106327730 14 + TSS region transcription start site region 86882
Tssr86883 9 106329439 to 106329441 2 + TSS region transcription start site region 86883
Cpgi22260 9 106367492 to 106369628 2136 CpG island CpG island 22260
Tssr86884 9 106367943 to 106367976 33 + TSS region transcription start site region 86884
Tssr86885 9 106368551 to 106368572 21 + TSS region transcription start site region 86885
Tssr86886 9 106368594 to 106368640 46 + TSS region transcription start site region 86886
Dusp7 9 106368632 to 106375724 7092 + protein coding gene dual specificity phosphatase 7
Tssr86887 9 106370823 to 106370855 32 + TSS region transcription start site region 86887
Tssr86888 9 106372083 to 106372105 22 + TSS region transcription start site region 86888
Tssr86889 9 106374207 to 106374219 12 + TSS region transcription start site region 86889
Tssr86890 9 106374304 to 106374344 40 + TSS region transcription start site region 86890
Tssr86891 9 106374425 to 106374429 4 + TSS region transcription start site region 86891
Gm33616 9 106389272 to 106422394 33122 - lncRNA gene predicted gene, 33616
Tssr3005 9 106396645 to 106396648 3 + TSS region transcription start site region 3005
Tssr91309 9 106399703 to 106399705 2 - TSS region transcription start site region 91309
Gm46131 9 106405498 to 106414601 9103 - lncRNA gene predicted gene, 46131