Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:105890318-106196828

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col6a5 9 105856078 to 105960643 104565 - protein coding gene collagen, type VI, alpha 5
Tssr91272 9 105960642 to 105960659 17 - TSS region transcription start site region 91272
Tssr91273 9 105960677 to 105960688 11 - TSS region transcription start site region 91273
Col6a4 9 105990109 to 106096828 106719 - protein coding gene collagen, type VI, alpha 4
Cpgi22249 9 106000282 to 106000620 338 CpG island CpG island 22249
Gm24631 9 106001718 to 106001798 80 + snRNA gene predicted gene, 24631
Gm47575 9 106013530 to 106014653 1123 + antisense lncRNA gene predicted gene, 47575
Tssr91274 9 106040772 to 106040812 40 - TSS region transcription start site region 91274
Tssr91275 9 106066498 to 106066515 17 - TSS region transcription start site region 91275
Tssr91276 9 106080204 to 106080216 12 - TSS region transcription start site region 91276
Tssr91277 9 106080314 to 106080321 7 - TSS region transcription start site region 91277
Gm36993 9 106095474 to 106098453 2979 + unclassified gene predicted gene, 36993
Tssr91278 9 106096739 to 106096744 5 - TSS region transcription start site region 91278
Tssr91279 9 106096776 to 106096791 15 - TSS region transcription start site region 91279
Tssr91280 9 106096811 to 106096823 12 - TSS region transcription start site region 91280
Cpgi22250 9 106099434 to 106099654 220 CpG island CpG island 22250
Tssr91281 9 106106181 to 106106207 26 - TSS region transcription start site region 91281
Tssr91282 9 106112482 to 106112486 4 - TSS region transcription start site region 91282
Gm9451 9 106121296 to 106121899 603 - pseudogene predicted gene 9451
Gm29208 9 106122079 to 106128095 6016 - lincRNA gene predicted gene 29208
Tssr3002 9 106127088 to 106127094 6 - TSS region transcription start site region 3002
Tssr91283 9 106133513 to 106133519 6 - TSS region transcription start site region 91283
Tssr91284 9 106133577 to 106133587 10 - TSS region transcription start site region 91284
Tssr91285 9 106133628 to 106133635 7 - TSS region transcription start site region 91285
Tssr91286 9 106136014 to 106136019 5 - TSS region transcription start site region 91286
Tssr91287 9 106136049 to 106136068 19 - TSS region transcription start site region 91287
Tssr91288 9 106136358 to 106136362 4 - TSS region transcription start site region 91288
Tssr91289 9 106136365 to 106136373 8 - TSS region transcription start site region 91289
Tssr91290 9 106136375 to 106136389 14 - TSS region transcription start site region 91290
Tssr91291 9 106136397 to 106136401 4 - TSS region transcription start site region 91291
Tssr86850 9 106147942 to 106147955 13 + TSS region transcription start site region 86850
Tssr86851 9 106147967 to 106147983 16 + TSS region transcription start site region 86851
Tssr86852 9 106148308 to 106148332 24 + TSS region transcription start site region 86852
Cpgi22251 9 106148677 to 106149220 543 CpG island CpG island 22251
D030055H07Rik 9 106148687 to 106160201 11514 + antisense lncRNA gene RIKEN cDNA D030055H07 gene
Tssr86853 9 106148692 to 106148712 20 + TSS region transcription start site region 86853
Glyctk 9 106152857 to 106158138 5281 - protein coding gene glycerate kinase
Mir135a-1 9 106154124 to 106154213 89 + miRNA gene microRNA 135a-1
Tssr91292 9 106158109 to 106158132 23 - TSS region transcription start site region 91292
Tssr91293 9 106158134 to 106158141 7 - TSS region transcription start site region 91293
Cpgi22252 9 106159757 to 106160194 437 CpG island CpG island 22252
Tssr91294 9 106159894 to 106159916 22 - TSS region transcription start site region 91294
Tssr3003 9 106160036 to 106160067 31 + TSS region transcription start site region 3003
Tssr91295 9 106160120 to 106160143 23 - TSS region transcription start site region 91295
Tssr86854 9 106165997 to 106166009 12 + TSS region transcription start site region 86854
Cpgi22253 9 106170546 to 106171891 1345 CpG island CpG island 22253
Tssr86855 9 106170885 to 106170892 7 + TSS region transcription start site region 86855
Tssr86856 9 106170918 to 106170953 35 + TSS region transcription start site region 86856
Wdr82 9 106170928 to 106191139 20211 + protein coding gene WD repeat domain containing 82
Tssr86857 9 106171180 to 106171226 46 + TSS region transcription start site region 86857
Tssr86858 9 106171312 to 106171331 19 + TSS region transcription start site region 86858
Tssr86859 9 106178086 to 106178089 3 + TSS region transcription start site region 86859
Mirlet7g 9 106178840 to 106178927 87 + miRNA gene microRNA let7g
Tssr86860 9 106178923 to 106178926 3 + TSS region transcription start site region 86860
Tssr86861 9 106179745 to 106179757 12 + TSS region transcription start site region 86861
Tssr86862 9 106189248 to 106189252 4 + TSS region transcription start site region 86862
Ppm1m 9 106194953 to 106199233 4280 - protein coding gene protein phosphatase 1M