Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:105568054-106088066

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D9Dcr79 9 105570807 to 105570911 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 79
D9Dcr80 9 105578168 to 105578270 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 80
D9Dcr81 9 105631493 to 105631589 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 81
Cpgi22247 9 105642821 to 105643328 507 CpG island CpG island 22247
Tssr86844 9 105642957 to 105643036 79 + TSS region transcription start site region 86844
Pik3r4 9 105642995 to 105687655 44660 + protein coding gene phosphoinositide-3-kinase regulatory subunit 4
D9Dcr82 9 105645533 to 105645642 109 DNA segment DNA segment, Chr 9, Derry C. Roopenian 82
Tssr86845 9 105658386 to 105658391 5 + TSS region transcription start site region 86845
Tssr86846 9 105658402 to 105658426 24 + TSS region transcription start site region 86846
Tssr86847 9 105658435 to 105658456 21 + TSS region transcription start site region 86847
Tssr86848 9 105658479 to 105658489 10 + TSS region transcription start site region 86848
Tssr86849 9 105658498 to 105658505 7 + TSS region transcription start site region 86849
Gm22720 9 105673465 to 105673551 86 - snRNA gene predicted gene, 22720
D9Dcr83 9 105689181 to 105689283 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 83
Col6a6 9 105689417 to 105828245 138828 - protein coding gene collagen, type VI, alpha 6
D9Dcr84 9 105692473 to 105692579 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 84
D9Dcr85 9 105701768 to 105701878 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 85
D9Dcr86 9 105714929 to 105715022 93 DNA segment DNA segment, Chr 9, Derry C. Roopenian 86
D430039P05Rik 9 105720739 to 105722839 2100 unclassified gene RIKEN cDNA D430039P05 gene
Gm38314 9 105727785 to 105728409 624 + unclassified gene predicted gene, 38314
Tssr91263 9 105764160 to 105764161 1 - TSS region transcription start site region 91263
Tssr91264 9 105764653 to 105764664 11 - TSS region transcription start site region 91264
Tssr91265 9 105764712 to 105764740 28 - TSS region transcription start site region 91265
Cpgi22248 9 105819059 to 105819667 608 CpG island CpG island 22248
Tssr91266 9 105819467 to 105819496 29 - TSS region transcription start site region 91266
Tssr91267 9 105819553 to 105819554 1 - TSS region transcription start site region 91267
Tssr91268 9 105827996 to 105828049 53 - TSS region transcription start site region 91268
Tssr91269 9 105828054 to 105828066 12 - TSS region transcription start site region 91269
Tssr91270 9 105828086 to 105828100 14 - TSS region transcription start site region 91270
Tssr91271 9 105828121 to 105828173 52 - TSS region transcription start site region 91271
Tssr3001 9 105829959 to 105829960 1 - TSS region transcription start site region 3001
Col6a5 9 105856078 to 105960643 104565 - protein coding gene collagen, type VI, alpha 5
D9Dcr87 9 105882793 to 105882932 139 DNA segment DNA segment, Chr 9, Derry C. Roopenian 87
D9Mit310 9 105882832 to 105882935 103 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 310
Tssr91272 9 105960642 to 105960659 17 - TSS region transcription start site region 91272
Tssr91273 9 105960677 to 105960688 11 - TSS region transcription start site region 91273
Col6a4 9 105990109 to 106096828 106719 - protein coding gene collagen, type VI, alpha 4
Cpgi22249 9 106000282 to 106000620 338 CpG island CpG island 22249
Gm24631 9 106001718 to 106001798 80 + snRNA gene predicted gene, 24631
Gm47575 9 106013530 to 106014653 1123 + antisense lncRNA gene predicted gene, 47575
Tssr91274 9 106040772 to 106040812 40 - TSS region transcription start site region 91274
Tssr91275 9 106066498 to 106066515 17 - TSS region transcription start site region 91275
Tssr91276 9 106080204 to 106080216 12 - TSS region transcription start site region 91276
Tssr91277 9 106080314 to 106080321 7 - TSS region transcription start site region 91277