Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:105459160-106069161

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
dcr 9 104782400 to 105554952 772552 heritable phenotypic marker decrepit
Atp2c1 9 105411362 to 105521257 109895 - protein coding gene ATPase, Ca++-sequestering
Tssr86838 9 105470488 to 105470499 11 + TSS region transcription start site region 86838
Tssr86839 9 105470514 to 105470525 11 + TSS region transcription start site region 86839
Gm19667 9 105470520 to 105480194 9674 + antisense lncRNA gene predicted gene, 19667
Tssr86840 9 105470535 to 105470540 5 + TSS region transcription start site region 86840
D9Dcr75 9 105479812 to 105479924 112 DNA segment DNA segment, Chr 9, Derry C. Roopenian 75
Tssr91254 9 105480181 to 105480194 13 - TSS region transcription start site region 91254
Tssr86841 9 105483155 to 105483159 4 + TSS region transcription start site region 86841
Tssr86842 9 105491895 to 105491902 7 + TSS region transcription start site region 86842
Cpgi22246 9 105494414 to 105495820 1406 CpG island CpG island 22246
Tssr91255 9 105494962 to 105494997 35 - TSS region transcription start site region 91255
Tssr91256 9 105495037 to 105495117 80 - TSS region transcription start site region 91256
Tssr91257 9 105495130 to 105495146 16 - TSS region transcription start site region 91257
Tssr91258 9 105495153 to 105495189 36 - TSS region transcription start site region 91258
Tssr86843 9 105495232 to 105495249 17 + TSS region transcription start site region 86843
Tssr91259 9 105495475 to 105495489 14 - TSS region transcription start site region 91259
Gm40564 9 105495992 to 105497198 1206 + lncRNA gene predicted gene, 40564
Tssr91260 9 105521237 to 105521265 28 - TSS region transcription start site region 91260
Tssr91261 9 105521333 to 105521369 36 - TSS region transcription start site region 91261
Gm7436 9 105545437 to 105545827 390 - pseudogene predicted gene 7436
D9Dcr76 9 105554851 to 105554952 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 76
D9Dcr77 9 105558742 to 105558855 113 DNA segment DNA segment, Chr 9, Derry C. Roopenian 77
Gm5621 9 105560122 to 105560761 639 - pseudogene predicted gene 5621
Tssr91262 9 105560804 to 105560813 9 - TSS region transcription start site region 91262
D9Dcr78 9 105564625 to 105564721 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 78
D9Dcr79 9 105570807 to 105570911 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 79
D9Dcr80 9 105578168 to 105578270 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 80
D9Dcr81 9 105631493 to 105631589 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 81
Cpgi22247 9 105642821 to 105643328 507 CpG island CpG island 22247
Tssr86844 9 105642957 to 105643036 79 + TSS region transcription start site region 86844
Pik3r4 9 105642995 to 105687655 44660 + protein coding gene phosphoinositide-3-kinase regulatory subunit 4
D9Dcr82 9 105645533 to 105645642 109 DNA segment DNA segment, Chr 9, Derry C. Roopenian 82
Tssr86845 9 105658386 to 105658391 5 + TSS region transcription start site region 86845
Tssr86846 9 105658402 to 105658426 24 + TSS region transcription start site region 86846
Tssr86847 9 105658435 to 105658456 21 + TSS region transcription start site region 86847
Tssr86848 9 105658479 to 105658489 10 + TSS region transcription start site region 86848
Tssr86849 9 105658498 to 105658505 7 + TSS region transcription start site region 86849
Gm22720 9 105673465 to 105673551 86 - snRNA gene predicted gene, 22720
D9Dcr83 9 105689181 to 105689283 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 83
Col6a6 9 105689417 to 105828245 138828 - protein coding gene collagen, type VI, alpha 6
D9Dcr84 9 105692473 to 105692579 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 84
D9Dcr85 9 105701768 to 105701878 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 85
D9Dcr86 9 105714929 to 105715022 93 DNA segment DNA segment, Chr 9, Derry C. Roopenian 86
D430039P05Rik 9 105720739 to 105722839 2100 unclassified gene RIKEN cDNA D430039P05 gene
Gm38314 9 105727785 to 105728409 624 + unclassified gene predicted gene, 38314
Tssr91263 9 105764160 to 105764161 1 - TSS region transcription start site region 91263
Tssr91264 9 105764653 to 105764664 11 - TSS region transcription start site region 91264
Tssr91265 9 105764712 to 105764740 28 - TSS region transcription start site region 91265
Cpgi22248 9 105819059 to 105819667 608 CpG island CpG island 22248
Tssr91266 9 105819467 to 105819496 29 - TSS region transcription start site region 91266
Tssr91267 9 105819553 to 105819554 1 - TSS region transcription start site region 91267
Tssr91268 9 105827996 to 105828049 53 - TSS region transcription start site region 91268
Tssr91269 9 105828054 to 105828066 12 - TSS region transcription start site region 91269
Tssr91270 9 105828086 to 105828100 14 - TSS region transcription start site region 91270
Tssr91271 9 105828121 to 105828173 52 - TSS region transcription start site region 91271
Tssr3001 9 105829959 to 105829960 1 - TSS region transcription start site region 3001
Col6a5 9 105856078 to 105960643 104565 - protein coding gene collagen, type VI, alpha 5
D9Dcr87 9 105882793 to 105882932 139 DNA segment DNA segment, Chr 9, Derry C. Roopenian 87
D9Mit310 9 105882832 to 105882935 103 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 310
Tssr91272 9 105960642 to 105960659 17 - TSS region transcription start site region 91272
Tssr91273 9 105960677 to 105960688 11 - TSS region transcription start site region 91273
Col6a4 9 105990109 to 106096828 106719 - protein coding gene collagen, type VI, alpha 4
Cpgi22249 9 106000282 to 106000620 338 CpG island CpG island 22249
Gm24631 9 106001718 to 106001798 80 + snRNA gene predicted gene, 24631
Gm47575 9 106013530 to 106014653 1123 + antisense lncRNA gene predicted gene, 47575
Tssr91274 9 106040772 to 106040812 40 - TSS region transcription start site region 91274
Tssr91275 9 106066498 to 106066515 17 - TSS region transcription start site region 91275