Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:104548999-110789020

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1584 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpne4 9 104566665 to 105034548 467883 + protein coding gene copine IV
Tssr86819 9 104566695 to 104566706 11 + TSS region transcription start site region 86819
Tssr86820 9 104566733 to 104566745 12 + TSS region transcription start site region 86820
Tssr86821 9 104566768 to 104566773 5 + TSS region transcription start site region 86821
Cpgi22242 9 104569463 to 104569673 210 CpG island CpG island 22242
Tssr86822 9 104569601 to 104569631 30 + TSS region transcription start site region 86822
Tssr86823 9 104569633 to 104569665 32 + TSS region transcription start site region 86823
Tssr86824 9 104569672 to 104569683 11 + TSS region transcription start site region 86824
Tssr86825 9 104569735 to 104569746 11 + TSS region transcription start site region 86825
Tssr86826 9 104569754 to 104569793 39 + TSS region transcription start site region 86826
Tssr86827 9 104569795 to 104569800 5 + TSS region transcription start site region 86827
Tssr86828 9 104588051 to 104588075 24 + TSS region transcription start site region 86828
D9Dcr55 9 104595465 to 104595564 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 55
Tssr2999 9 104727896 to 104727898 2 + TSS region transcription start site region 2999
D9Mit53 9 104782282 to 104782493 211 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 53
D9Dcr56 9 104782400 to 104782504 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 56
dcr 9 104782400 to 105554952 772552 heritable phenotypic marker decrepit
V25Dq6 9 104800000 to 104800000 0 QTL vitamin D inactive form serum level QTL 6
D9Dcr57 9 104842584 to 104842689 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 57
Tssr86829 9 104854457 to 104854474 17 + TSS region transcription start site region 86829
D9Dcr58 9 104899515 to 104899614 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 58
D9Dcr59 9 104905575 to 104905674 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 59
D9Dcr60 9 104951347 to 104951442 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 60
D9Dcr61 9 104984625 to 104984729 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 61
D9Dcr62 9 104994332 to 104994427 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 62
Gm23391 9 104994916 to 104995019 103 + miRNA gene predicted gene, 23391
D9Dcr63 9 105011298 to 105011394 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 63
Tssr86830 9 105018368 to 105018378 10 + TSS region transcription start site region 86830
Tssr86831 9 105018400 to 105018408 8 + TSS region transcription start site region 86831
Cpgi22243 9 105053156 to 105053561 405 CpG island CpG island 22243
Tssr86832 9 105053248 to 105053259 11 + TSS region transcription start site region 86832
Tssr86833 9 105053260 to 105053303 43 + TSS region transcription start site region 86833
Mrpl3 9 105053268 to 105077476 24208 + protein coding gene mitochondrial ribosomal protein L3
Gm38077 9 105064777 to 105068021 3244 + unclassified gene predicted gene, 38077
Gm47106 9 105064805 to 105088286 23481 - antisense lncRNA gene predicted gene, 47106
Gm47103 9 105085920 to 105087030 1110 + pseudogene predicted gene, 47103
Gm47102 9 105087075 to 105090181 3106 + pseudogene predicted gene, 47102
D9Mit80 9 105096928 to 105097075 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 80
Nudt16 9 105129332 to 105131843 2511 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16
Cpgi22244 9 105131158 to 105132202 1044 CpG island CpG island 22244
Tssr91247 9 105131775 to 105131833 58 - TSS region transcription start site region 91247
D9Mit321 9 105137755 to 105137954 199 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-321
D9Dcr64 9 105141341 to 105141436 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 64
Nudt16l2 9 105143344 to 105145082 1738 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 2
Tssr91248 9 105145011 to 105145014 3 - TSS region transcription start site region 91248
Tssr91249 9 105145072 to 105145106 34 - TSS region transcription start site region 91249
Nek11 9 105162156 to 105395524 233368 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 11
Gm37582 9 105163125 to 105164533 1408 + unclassified gene predicted gene, 37582
D9Dcr65 9 105179995 to 105180095 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 65
D9Dcr66 9 105185430 to 105185538 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 66
D9Dcr67 9 105198720 to 105198820 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 67
Gm20643 9 105208196 to 105211863 3667 + antisense lncRNA gene predicted gene 20643
D9Dcr68 9 105270667 to 105270767 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 68
D9Dcr69 9 105277892 to 105277996 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 69
Tssr3000 9 105316364 to 105316365 1 + TSS region transcription start site region 3000
Gm15619 9 105333513 to 105348916 15403 + antisense lncRNA gene predicted gene 15619
D9Dcr70 9 105360304 to 105360399 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 70
D9Dcr71 9 105365724 to 105365830 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 71
D9Dcr73 9 105380558 to 105380653 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 73
Cpgi22245 9 105395076 to 105395802 726 CpG island CpG island 22245
Tssr91250 9 105395237 to 105395289 52 - TSS region transcription start site region 91250
Aste1 9 105395294 to 105408298 13004 + protein coding gene asteroid homolog 1
Tssr86834 9 105395309 to 105395345 36 + TSS region transcription start site region 86834
Tssr86835 9 105395348 to 105395411 63 + TSS region transcription start site region 86835
Tssr86836 9 105395519 to 105395563 44 + TSS region transcription start site region 86836
Tssr86837 9 105395564 to 105395602 38 + TSS region transcription start site region 86837
Atp2c1 9 105411362 to 105521257 109895 - protein coding gene ATPase, Ca++-sequestering
Tssr91251 9 105412492 to 105412495 3 - TSS region transcription start site region 91251
Tssr91252 9 105420446 to 105420457 11 - TSS region transcription start site region 91252
Tssr91253 9 105428288 to 105428293 5 - TSS region transcription start site region 91253
D9Dcr74 9 105435217 to 105435312 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 74
Tssr86838 9 105470488 to 105470499 11 + TSS region transcription start site region 86838
Tssr86839 9 105470514 to 105470525 11 + TSS region transcription start site region 86839
Gm19667 9 105470520 to 105480194 9674 + antisense lncRNA gene predicted gene, 19667
Tssr86840 9 105470535 to 105470540 5 + TSS region transcription start site region 86840
D9Dcr75 9 105479812 to 105479924 112 DNA segment DNA segment, Chr 9, Derry C. Roopenian 75
Tssr91254 9 105480181 to 105480194 13 - TSS region transcription start site region 91254
Tssr86841 9 105483155 to 105483159 4 + TSS region transcription start site region 86841
Tssr86842 9 105491895 to 105491902 7 + TSS region transcription start site region 86842
Cpgi22246 9 105494414 to 105495820 1406 CpG island CpG island 22246
Tssr91255 9 105494962 to 105494997 35 - TSS region transcription start site region 91255
Tssr91256 9 105495037 to 105495117 80 - TSS region transcription start site region 91256
Tssr91257 9 105495130 to 105495146 16 - TSS region transcription start site region 91257
Tssr91258 9 105495153 to 105495189 36 - TSS region transcription start site region 91258
Tssr86843 9 105495232 to 105495249 17 + TSS region transcription start site region 86843
Tssr91259 9 105495475 to 105495489 14 - TSS region transcription start site region 91259
Gm40564 9 105495992 to 105497198 1206 + lncRNA gene predicted gene, 40564
Tssr91260 9 105521237 to 105521265 28 - TSS region transcription start site region 91260
Tssr91261 9 105521333 to 105521369 36 - TSS region transcription start site region 91261
Gm7436 9 105545437 to 105545827 390 - pseudogene predicted gene 7436
D9Dcr76 9 105554851 to 105554952 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 76
D9Dcr77 9 105558742 to 105558855 113 DNA segment DNA segment, Chr 9, Derry C. Roopenian 77
Gm5621 9 105560122 to 105560761 639 - pseudogene predicted gene 5621
Tssr91262 9 105560804 to 105560813 9 - TSS region transcription start site region 91262
D9Dcr78 9 105564625 to 105564721 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 78
D9Dcr79 9 105570807 to 105570911 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 79
D9Dcr80 9 105578168 to 105578270 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 80
D9Dcr81 9 105631493 to 105631589 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 81
Cpgi22247 9 105642821 to 105643328 507 CpG island CpG island 22247
Tssr86844 9 105642957 to 105643036 79 + TSS region transcription start site region 86844
Pik3r4 9 105642995 to 105687655 44660 + protein coding gene phosphoinositide-3-kinase regulatory subunit 4
D9Dcr82 9 105645533 to 105645642 109 DNA segment DNA segment, Chr 9, Derry C. Roopenian 82
Tssr86845 9 105658386 to 105658391 5 + TSS region transcription start site region 86845
Tssr86846 9 105658402 to 105658426 24 + TSS region transcription start site region 86846
Tssr86847 9 105658435 to 105658456 21 + TSS region transcription start site region 86847
Tssr86848 9 105658479 to 105658489 10 + TSS region transcription start site region 86848
Tssr86849 9 105658498 to 105658505 7 + TSS region transcription start site region 86849
Gm22720 9 105673465 to 105673551 86 - snRNA gene predicted gene, 22720
D9Dcr83 9 105689181 to 105689283 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 83
Col6a6 9 105689417 to 105828245 138828 - protein coding gene collagen, type VI, alpha 6
D9Dcr84 9 105692473 to 105692579 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 84
D9Dcr85 9 105701768 to 105701878 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 85
D9Dcr86 9 105714929 to 105715022 93 DNA segment DNA segment, Chr 9, Derry C. Roopenian 86
D430039P05Rik 9 105720739 to 105722839 2100 unclassified gene RIKEN cDNA D430039P05 gene
Gm38314 9 105727785 to 105728409 624 + unclassified gene predicted gene, 38314
Tssr91263 9 105764160 to 105764161 1 - TSS region transcription start site region 91263
Tssr91264 9 105764653 to 105764664 11 - TSS region transcription start site region 91264
Tssr91265 9 105764712 to 105764740 28 - TSS region transcription start site region 91265
Cpgi22248 9 105819059 to 105819667 608 CpG island CpG island 22248
Tssr91266 9 105819467 to 105819496 29 - TSS region transcription start site region 91266
Tssr91267 9 105819553 to 105819554 1 - TSS region transcription start site region 91267
Tssr91268 9 105827996 to 105828049 53 - TSS region transcription start site region 91268
Tssr91269 9 105828054 to 105828066 12 - TSS region transcription start site region 91269
Tssr91270 9 105828086 to 105828100 14 - TSS region transcription start site region 91270
Tssr91271 9 105828121 to 105828173 52 - TSS region transcription start site region 91271
Tssr3001 9 105829959 to 105829960 1 - TSS region transcription start site region 3001
Col6a5 9 105856078 to 105960643 104565 - protein coding gene collagen, type VI, alpha 5
D9Dcr87 9 105882793 to 105882932 139 DNA segment DNA segment, Chr 9, Derry C. Roopenian 87
D9Mit310 9 105882832 to 105882935 103 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 310
Tssr91272 9 105960642 to 105960659 17 - TSS region transcription start site region 91272
Tssr91273 9 105960677 to 105960688 11 - TSS region transcription start site region 91273
Col6a4 9 105990109 to 106096828 106719 - protein coding gene collagen, type VI, alpha 4
Cpgi22249 9 106000282 to 106000620 338 CpG island CpG island 22249
Gm24631 9 106001718 to 106001798 80 + snRNA gene predicted gene, 24631
Gm47575 9 106013530 to 106014653 1123 + antisense lncRNA gene predicted gene, 47575
Tssr91274 9 106040772 to 106040812 40 - TSS region transcription start site region 91274
Tssr91275 9 106066498 to 106066515 17 - TSS region transcription start site region 91275
Tssr91276 9 106080204 to 106080216 12 - TSS region transcription start site region 91276
Tssr91277 9 106080314 to 106080321 7 - TSS region transcription start site region 91277
Gm36993 9 106095474 to 106098453 2979 + unclassified gene predicted gene, 36993
Tssr91278 9 106096739 to 106096744 5 - TSS region transcription start site region 91278
Tssr91279 9 106096776 to 106096791 15 - TSS region transcription start site region 91279
Tssr91280 9 106096811 to 106096823 12 - TSS region transcription start site region 91280
Cpgi22250 9 106099434 to 106099654 220 CpG island CpG island 22250
Tssr91281 9 106106181 to 106106207 26 - TSS region transcription start site region 91281
Tssr91282 9 106112482 to 106112486 4 - TSS region transcription start site region 91282
Gm9451 9 106121296 to 106121899 603 - pseudogene predicted gene 9451
Gm29208 9 106122079 to 106128095 6016 - lincRNA gene predicted gene 29208
Tssr3002 9 106127088 to 106127094 6 - TSS region transcription start site region 3002
Tssr91283 9 106133513 to 106133519 6 - TSS region transcription start site region 91283
Tssr91284 9 106133577 to 106133587 10 - TSS region transcription start site region 91284
Tssr91285 9 106133628 to 106133635 7 - TSS region transcription start site region 91285
Tssr91286 9 106136014 to 106136019 5 - TSS region transcription start site region 91286
Tssr91287 9 106136049 to 106136068 19 - TSS region transcription start site region 91287
Tssr91288 9 106136358 to 106136362 4 - TSS region transcription start site region 91288
Tssr91289 9 106136365 to 106136373 8 - TSS region transcription start site region 91289
Tssr91290 9 106136375 to 106136389 14 - TSS region transcription start site region 91290
Tssr91291 9 106136397 to 106136401 4 - TSS region transcription start site region 91291
Tssr86850 9 106147942 to 106147955 13 + TSS region transcription start site region 86850
Tssr86851 9 106147967 to 106147983 16 + TSS region transcription start site region 86851
Tssr86852 9 106148308 to 106148332 24 + TSS region transcription start site region 86852
Cpgi22251 9 106148677 to 106149220 543 CpG island CpG island 22251
D030055H07Rik 9 106148687 to 106160201 11514 + antisense lncRNA gene RIKEN cDNA D030055H07 gene
Tssr86853 9 106148692 to 106148712 20 + TSS region transcription start site region 86853
Glyctk 9 106152857 to 106158138 5281 - protein coding gene glycerate kinase
Mir135a-1 9 106154124 to 106154213 89 + miRNA gene microRNA 135a-1
Tssr91292 9 106158109 to 106158132 23 - TSS region transcription start site region 91292
Tssr91293 9 106158134 to 106158141 7 - TSS region transcription start site region 91293
Cpgi22252 9 106159757 to 106160194 437 CpG island CpG island 22252
Tssr91294 9 106159894 to 106159916 22 - TSS region transcription start site region 91294
Tssr3003 9 106160036 to 106160067 31 + TSS region transcription start site region 3003
Tssr91295 9 106160120 to 106160143 23 - TSS region transcription start site region 91295
Tssr86854 9 106165997 to 106166009 12 + TSS region transcription start site region 86854
Cpgi22253 9 106170546 to 106171891 1345 CpG island CpG island 22253
Tssr86855 9 106170885 to 106170892 7 + TSS region transcription start site region 86855
Tssr86856 9 106170918 to 106170953 35 + TSS region transcription start site region 86856
Wdr82 9 106170928 to 106191139 20211 + protein coding gene WD repeat domain containing 82
Tssr86857 9 106171180 to 106171226 46 + TSS region transcription start site region 86857
Tssr86858 9 106171312 to 106171331 19 + TSS region transcription start site region 86858
Tssr86859 9 106178086 to 106178089 3 + TSS region transcription start site region 86859
Mirlet7g 9 106178840 to 106178927 87 + miRNA gene microRNA let7g
Tssr86860 9 106178923 to 106178926 3 + TSS region transcription start site region 86860
Tssr86861 9 106179745 to 106179757 12 + TSS region transcription start site region 86861
Tssr86862 9 106189248 to 106189252 4 + TSS region transcription start site region 86862
Ppm1m 9 106194953 to 106199233 4280 - protein coding gene protein phosphatase 1M
Tssr3004 9 106197468 to 106197476 8 - TSS region transcription start site region 3004
Cpgi22254 9 106198661 to 106199802 1141 CpG island CpG island 22254
Tssr91296 9 106199138 to 106199155 17 - TSS region transcription start site region 91296
Tssr91297 9 106199190 to 106199246 56 - TSS region transcription start site region 91297
Tssr91298 9 106199253 to 106199286 33 - TSS region transcription start site region 91298
Cpgi22255 9 106202655 to 106203606 951 CpG island CpG island 22255
Twf2 9 106203108 to 106215387 12279 + protein coding gene twinfilin actin binding protein 2
Tssr86863 9 106203108 to 106203171 63 + TSS region transcription start site region 86863
Tssr86864 9 106203190 to 106203201 11 + TSS region transcription start site region 86864
Tssr86865 9 106206789 to 106206804 15 + TSS region transcription start site region 86865
Tssr86866 9 106211599 to 106211620 21 + TSS region transcription start site region 86866
Cpgi22256 9 106211752 to 106212194 442 CpG island CpG island 22256
Tssr86867 9 106212174 to 106212204 30 + TSS region transcription start site region 86867
Tssr86868 9 106222598 to 106222629 31 + TSS region transcription start site region 86868
Tlr9 9 106222598 to 106226876 4278 + protein coding gene toll-like receptor 9