Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:104258268-105872476

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnajc13 9 104151597 to 104263172 111575 - protein coding gene DnaJ heat shock protein family (Hsp40) member C13
Gm37563 9 104262105 to 104263617 1512 + unclassified gene predicted gene, 37563
Tssr91238 9 104262246 to 104262267 21 - TSS region transcription start site region 91238
Cpgi22240 9 104262313 to 104263489 1176 CpG island CpG island 22240
Tssr91239 9 104262423 to 104262431 8 - TSS region transcription start site region 91239
Tssr91240 9 104262900 to 104262949 49 - TSS region transcription start site region 91240
Tssr91241 9 104262960 to 104262971 11 - TSS region transcription start site region 91241
Tssr86811 9 104263223 to 104263243 20 + TSS region transcription start site region 86811
Tssr86812 9 104263273 to 104263293 20 + TSS region transcription start site region 86812
D9Dcr53 9 104267800 to 104267900 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 53
Acpp 9 104288240 to 104337722 49482 - protein coding gene acid phosphatase, prostate
D9Mgc31 9 104288402 to 104288582 180 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 31
Tssr91242 9 104300083 to 104300096 13 - TSS region transcription start site region 91242
D9Dcr54 9 104307641 to 104307742 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 54
Tssr91243 9 104320053 to 104320080 27 - TSS region transcription start site region 91243
Tssr91244 9 104328023 to 104328024 1 - TSS region transcription start site region 91244
Tssr91245 9 104337700 to 104337733 33 - TSS region transcription start site region 91245
Tssr86813 9 104337846 to 104337872 26 + TSS region transcription start site region 86813
Tssr91246 9 104339132 to 104339137 5 - TSS region transcription start site region 91246
Gm28996 9 104344131 to 104344851 720 - pseudogene predicted gene 28996
Tssr86814 9 104355958 to 104356003 45 + TSS region transcription start site region 86814
Tssr86815 9 104361829 to 104361833 4 + TSS region transcription start site region 86815
Gm28548 9 104361832 to 104385031 23199 + lincRNA gene predicted gene 28548
Tssr86816 9 104361836 to 104361846 10 + TSS region transcription start site region 86816
Tssr86817 9 104361893 to 104361899 6 + TSS region transcription start site region 86817
n-TCgca47 9 104400120 to 104400191 71 + tRNA gene nuclear encoded tRNA cysteine 47 (anticodon GCA)
n-TCgca53 9 104404056 to 104404127 71 + tRNA gene nuclear encoded tRNA cysteine 53 (anticodon GCA)
n-TEttc8 9 104408667 to 104408738 71 - tRNA gene nuclear encoded tRNA glutamic acid 8 (anticodon TTC)
Cpgi22241 9 104409159 to 104409343 184 CpG island CpG island 22241
Mir2136 9 104426113 to 104426187 74 + miRNA gene microRNA 2136
D9Mit77 9 104427138 to 104427315 177 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 77
Gm25904 9 104481368 to 104481510 142 - snoRNA gene predicted gene, 25904
Tssr86818 9 104547267 to 104547295 28 + TSS region transcription start site region 86818
Cpne4 9 104566665 to 105034548 467883 + protein coding gene copine IV
Tssr86819 9 104566695 to 104566706 11 + TSS region transcription start site region 86819
Tssr86820 9 104566733 to 104566745 12 + TSS region transcription start site region 86820
Tssr86821 9 104566768 to 104566773 5 + TSS region transcription start site region 86821
Cpgi22242 9 104569463 to 104569673 210 CpG island CpG island 22242
Tssr86822 9 104569601 to 104569631 30 + TSS region transcription start site region 86822
Tssr86823 9 104569633 to 104569665 32 + TSS region transcription start site region 86823
Tssr86824 9 104569672 to 104569683 11 + TSS region transcription start site region 86824
Tssr86825 9 104569735 to 104569746 11 + TSS region transcription start site region 86825
Tssr86826 9 104569754 to 104569793 39 + TSS region transcription start site region 86826
Tssr86827 9 104569795 to 104569800 5 + TSS region transcription start site region 86827
Tssr86828 9 104588051 to 104588075 24 + TSS region transcription start site region 86828
D9Dcr55 9 104595465 to 104595564 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 55
Tssr2999 9 104727896 to 104727898 2 + TSS region transcription start site region 2999
D9Mit53 9 104782282 to 104782493 211 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 53
dcr 9 104782400 to 105554952 772552 heritable phenotypic marker decrepit
D9Dcr56 9 104782400 to 104782504 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 56
V25Dq6 9 104800000 to 104800000 0 QTL vitamin D inactive form serum level QTL 6
D9Dcr57 9 104842584 to 104842689 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 57
Tssr86829 9 104854457 to 104854474 17 + TSS region transcription start site region 86829
D9Dcr58 9 104899515 to 104899614 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 58
D9Dcr59 9 104905575 to 104905674 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 59
D9Dcr60 9 104951347 to 104951442 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 60
D9Dcr61 9 104984625 to 104984729 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 61
D9Dcr62 9 104994332 to 104994427 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 62
Gm23391 9 104994916 to 104995019 103 + miRNA gene predicted gene, 23391
D9Dcr63 9 105011298 to 105011394 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 63
Tssr86830 9 105018368 to 105018378 10 + TSS region transcription start site region 86830
Tssr86831 9 105018400 to 105018408 8 + TSS region transcription start site region 86831
Cpgi22243 9 105053156 to 105053561 405 CpG island CpG island 22243
Tssr86832 9 105053248 to 105053259 11 + TSS region transcription start site region 86832
Tssr86833 9 105053260 to 105053303 43 + TSS region transcription start site region 86833
Mrpl3 9 105053268 to 105077476 24208 + protein coding gene mitochondrial ribosomal protein L3
Gm38077 9 105064777 to 105068021 3244 + unclassified gene predicted gene, 38077
Gm47106 9 105064805 to 105088286 23481 - antisense lncRNA gene predicted gene, 47106
Gm47103 9 105085920 to 105087030 1110 + pseudogene predicted gene, 47103
Gm47102 9 105087075 to 105090181 3106 + pseudogene predicted gene, 47102
D9Mit80 9 105096928 to 105097075 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 80
Nudt16 9 105129332 to 105131843 2511 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16
Cpgi22244 9 105131158 to 105132202 1044 CpG island CpG island 22244
Tssr91247 9 105131775 to 105131833 58 - TSS region transcription start site region 91247
D9Mit321 9 105137755 to 105137954 199 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-321
D9Dcr64 9 105141341 to 105141436 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 64
Nudt16l2 9 105143344 to 105145082 1738 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 2
Tssr91248 9 105145011 to 105145014 3 - TSS region transcription start site region 91248
Tssr91249 9 105145072 to 105145106 34 - TSS region transcription start site region 91249
Nek11 9 105162156 to 105395524 233368 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 11
Gm37582 9 105163125 to 105164533 1408 + unclassified gene predicted gene, 37582
D9Dcr65 9 105179995 to 105180095 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 65
D9Dcr66 9 105185430 to 105185538 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 66
D9Dcr67 9 105198720 to 105198820 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 67
Gm20643 9 105208196 to 105211863 3667 + antisense lncRNA gene predicted gene 20643
D9Dcr68 9 105270667 to 105270767 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 68
D9Dcr69 9 105277892 to 105277996 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 69
Tssr3000 9 105316364 to 105316365 1 + TSS region transcription start site region 3000
Gm15619 9 105333513 to 105348916 15403 + antisense lncRNA gene predicted gene 15619
D9Dcr70 9 105360304 to 105360399 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 70
D9Dcr71 9 105365724 to 105365830 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 71
D9Dcr73 9 105380558 to 105380653 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 73
Cpgi22245 9 105395076 to 105395802 726 CpG island CpG island 22245
Tssr91250 9 105395237 to 105395289 52 - TSS region transcription start site region 91250
Aste1 9 105395294 to 105408298 13004 + protein coding gene asteroid homolog 1
Tssr86834 9 105395309 to 105395345 36 + TSS region transcription start site region 86834
Tssr86835 9 105395348 to 105395411 63 + TSS region transcription start site region 86835
Tssr86836 9 105395519 to 105395563 44 + TSS region transcription start site region 86836
Tssr86837 9 105395564 to 105395602 38 + TSS region transcription start site region 86837
Atp2c1 9 105411362 to 105521257 109895 - protein coding gene ATPase, Ca++-sequestering
Tssr91251 9 105412492 to 105412495 3 - TSS region transcription start site region 91251
Tssr91252 9 105420446 to 105420457 11 - TSS region transcription start site region 91252
Tssr91253 9 105428288 to 105428293 5 - TSS region transcription start site region 91253
D9Dcr74 9 105435217 to 105435312 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 74
Tssr86838 9 105470488 to 105470499 11 + TSS region transcription start site region 86838
Tssr86839 9 105470514 to 105470525 11 + TSS region transcription start site region 86839
Gm19667 9 105470520 to 105480194 9674 + antisense lncRNA gene predicted gene, 19667
Tssr86840 9 105470535 to 105470540 5 + TSS region transcription start site region 86840
D9Dcr75 9 105479812 to 105479924 112 DNA segment DNA segment, Chr 9, Derry C. Roopenian 75
Tssr91254 9 105480181 to 105480194 13 - TSS region transcription start site region 91254
Tssr86841 9 105483155 to 105483159 4 + TSS region transcription start site region 86841
Tssr86842 9 105491895 to 105491902 7 + TSS region transcription start site region 86842
Cpgi22246 9 105494414 to 105495820 1406 CpG island CpG island 22246
Tssr91255 9 105494962 to 105494997 35 - TSS region transcription start site region 91255
Tssr91256 9 105495037 to 105495117 80 - TSS region transcription start site region 91256
Tssr91257 9 105495130 to 105495146 16 - TSS region transcription start site region 91257
Tssr91258 9 105495153 to 105495189 36 - TSS region transcription start site region 91258
Tssr86843 9 105495232 to 105495249 17 + TSS region transcription start site region 86843
Tssr91259 9 105495475 to 105495489 14 - TSS region transcription start site region 91259
Gm40564 9 105495992 to 105497198 1206 + lncRNA gene predicted gene, 40564
Tssr91260 9 105521237 to 105521265 28 - TSS region transcription start site region 91260
Tssr91261 9 105521333 to 105521369 36 - TSS region transcription start site region 91261
Gm7436 9 105545437 to 105545827 390 - pseudogene predicted gene 7436
D9Dcr76 9 105554851 to 105554952 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 76
D9Dcr77 9 105558742 to 105558855 113 DNA segment DNA segment, Chr 9, Derry C. Roopenian 77
Gm5621 9 105560122 to 105560761 639 - pseudogene predicted gene 5621
Tssr91262 9 105560804 to 105560813 9 - TSS region transcription start site region 91262
D9Dcr78 9 105564625 to 105564721 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 78
D9Dcr79 9 105570807 to 105570911 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 79
D9Dcr80 9 105578168 to 105578270 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 80
D9Dcr81 9 105631493 to 105631589 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 81
Cpgi22247 9 105642821 to 105643328 507 CpG island CpG island 22247
Tssr86844 9 105642957 to 105643036 79 + TSS region transcription start site region 86844
Pik3r4 9 105642995 to 105687655 44660 + protein coding gene phosphoinositide-3-kinase regulatory subunit 4
D9Dcr82 9 105645533 to 105645642 109 DNA segment DNA segment, Chr 9, Derry C. Roopenian 82
Tssr86845 9 105658386 to 105658391 5 + TSS region transcription start site region 86845
Tssr86846 9 105658402 to 105658426 24 + TSS region transcription start site region 86846
Tssr86847 9 105658435 to 105658456 21 + TSS region transcription start site region 86847
Tssr86848 9 105658479 to 105658489 10 + TSS region transcription start site region 86848
Tssr86849 9 105658498 to 105658505 7 + TSS region transcription start site region 86849
Gm22720 9 105673465 to 105673551 86 - snRNA gene predicted gene, 22720
D9Dcr83 9 105689181 to 105689283 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 83
Col6a6 9 105689417 to 105828245 138828 - protein coding gene collagen, type VI, alpha 6
D9Dcr84 9 105692473 to 105692579 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 84
D9Dcr85 9 105701768 to 105701878 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 85
D9Dcr86 9 105714929 to 105715022 93 DNA segment DNA segment, Chr 9, Derry C. Roopenian 86
D430039P05Rik 9 105720739 to 105722839 2100 unclassified gene RIKEN cDNA D430039P05 gene
Gm38314 9 105727785 to 105728409 624 + unclassified gene predicted gene, 38314
Tssr91263 9 105764160 to 105764161 1 - TSS region transcription start site region 91263
Tssr91264 9 105764653 to 105764664 11 - TSS region transcription start site region 91264
Tssr91265 9 105764712 to 105764740 28 - TSS region transcription start site region 91265
Cpgi22248 9 105819059 to 105819667 608 CpG island CpG island 22248
Tssr91266 9 105819467 to 105819496 29 - TSS region transcription start site region 91266
Tssr91267 9 105819553 to 105819554 1 - TSS region transcription start site region 91267
Tssr91268 9 105827996 to 105828049 53 - TSS region transcription start site region 91268
Tssr91269 9 105828054 to 105828066 12 - TSS region transcription start site region 91269
Tssr91270 9 105828086 to 105828100 14 - TSS region transcription start site region 91270
Tssr91271 9 105828121 to 105828173 52 - TSS region transcription start site region 91271
Tssr3001 9 105829959 to 105829960 1 - TSS region transcription start site region 3001
Col6a5 9 105856078 to 105960643 104565 - protein coding gene collagen, type VI, alpha 5