Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:104138667-104678738

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnajc13 9 104151597 to 104263172 111575 - protein coding gene DnaJ heat shock protein family (Hsp40) member C13
D9Dcr52 9 104163459 to 104163563 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 52
Hmgb1-rs16 9 104169418 to 104169874 456 - pseudogene high mobility group box 1, related sequence 16
Gm46130 9 104181126 to 104205330 24204 + lncRNA gene predicted gene, 46130
Tssr91236 9 104186584 to 104186597 13 - TSS region transcription start site region 91236
Tssr91237 9 104213863 to 104213900 37 - TSS region transcription start site region 91237
Gm37563 9 104262105 to 104263617 1512 + unclassified gene predicted gene, 37563
Tssr91238 9 104262246 to 104262267 21 - TSS region transcription start site region 91238
Cpgi22240 9 104262313 to 104263489 1176 CpG island CpG island 22240
Tssr91239 9 104262423 to 104262431 8 - TSS region transcription start site region 91239
Tssr91240 9 104262900 to 104262949 49 - TSS region transcription start site region 91240
Tssr91241 9 104262960 to 104262971 11 - TSS region transcription start site region 91241
Tssr86811 9 104263223 to 104263243 20 + TSS region transcription start site region 86811
Tssr86812 9 104263273 to 104263293 20 + TSS region transcription start site region 86812
D9Dcr53 9 104267800 to 104267900 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 53
Acpp 9 104288240 to 104337722 49482 - protein coding gene acid phosphatase, prostate
D9Mgc31 9 104288402 to 104288582 180 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 31
Tssr91242 9 104300083 to 104300096 13 - TSS region transcription start site region 91242
D9Dcr54 9 104307641 to 104307742 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 54
Tssr91243 9 104320053 to 104320080 27 - TSS region transcription start site region 91243
Tssr91244 9 104328023 to 104328024 1 - TSS region transcription start site region 91244
Tssr91245 9 104337700 to 104337733 33 - TSS region transcription start site region 91245
Tssr86813 9 104337846 to 104337872 26 + TSS region transcription start site region 86813
Tssr91246 9 104339132 to 104339137 5 - TSS region transcription start site region 91246
Gm28996 9 104344131 to 104344851 720 - pseudogene predicted gene 28996
Tssr86814 9 104355958 to 104356003 45 + TSS region transcription start site region 86814
Tssr86815 9 104361829 to 104361833 4 + TSS region transcription start site region 86815
Gm28548 9 104361832 to 104385031 23199 + lincRNA gene predicted gene 28548
Tssr86816 9 104361836 to 104361846 10 + TSS region transcription start site region 86816
Tssr86817 9 104361893 to 104361899 6 + TSS region transcription start site region 86817
n-TCgca47 9 104400120 to 104400191 71 + tRNA gene nuclear encoded tRNA cysteine 47 (anticodon GCA)
n-TCgca53 9 104404056 to 104404127 71 + tRNA gene nuclear encoded tRNA cysteine 53 (anticodon GCA)
n-TEttc8 9 104408667 to 104408738 71 - tRNA gene nuclear encoded tRNA glutamic acid 8 (anticodon TTC)
Cpgi22241 9 104409159 to 104409343 184 CpG island CpG island 22241
Mir2136 9 104426113 to 104426187 74 + miRNA gene microRNA 2136
D9Mit77 9 104427138 to 104427315 177 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 77
Gm25904 9 104481368 to 104481510 142 - snoRNA gene predicted gene, 25904
Tssr86818 9 104547267 to 104547295 28 + TSS region transcription start site region 86818
Cpne4 9 104566665 to 105034548 467883 + protein coding gene copine IV
Tssr86819 9 104566695 to 104566706 11 + TSS region transcription start site region 86819
Tssr86820 9 104566733 to 104566745 12 + TSS region transcription start site region 86820
Tssr86821 9 104566768 to 104566773 5 + TSS region transcription start site region 86821
Cpgi22242 9 104569463 to 104569673 210 CpG island CpG island 22242
Tssr86822 9 104569601 to 104569631 30 + TSS region transcription start site region 86822
Tssr86823 9 104569633 to 104569665 32 + TSS region transcription start site region 86823
Tssr86824 9 104569672 to 104569683 11 + TSS region transcription start site region 86824
Tssr86825 9 104569735 to 104569746 11 + TSS region transcription start site region 86825
Tssr86826 9 104569754 to 104569793 39 + TSS region transcription start site region 86826
Tssr86827 9 104569795 to 104569800 5 + TSS region transcription start site region 86827
Tssr86828 9 104588051 to 104588075 24 + TSS region transcription start site region 86828
D9Dcr55 9 104595465 to 104595564 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 55