Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:103346788-104176816

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Topbp1 9 103305215 to 103350428 45213 + protein coding gene topoisomerase (DNA) II binding protein 1
Tssr91191 9 103347720 to 103347724 4 - TSS region transcription start site region 91191
Cdv3 9 103353102 to 103365835 12733 - protein coding gene carnitine deficiency-associated gene expressed in ventricle 3
D9Mgc22 9 103357305 to 103357403 98 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 22
Tssr91192 9 103358620 to 103358624 4 - TSS region transcription start site region 91192
Cpgi22235 9 103364482 to 103366217 1735 CpG island CpG island 22235
Tssr91193 9 103364782 to 103364845 63 - TSS region transcription start site region 91193
Tssr91194 9 103364939 to 103364964 25 - TSS region transcription start site region 91194
Tssr91195 9 103364970 to 103364996 26 - TSS region transcription start site region 91195
Tssr91196 9 103365371 to 103365408 37 - TSS region transcription start site region 91196
Tssr91197 9 103365421 to 103365480 59 - TSS region transcription start site region 91197
Tssr91198 9 103365599 to 103365613 14 - TSS region transcription start site region 91198
Tssr91199 9 103365623 to 103365694 71 - TSS region transcription start site region 91199
Tssr91200 9 103365731 to 103365739 8 - TSS region transcription start site region 91200
Tssr91201 9 103365744 to 103365756 12 - TSS region transcription start site region 91201
Tssr91202 9 103365769 to 103365785 16 - TSS region transcription start site region 91202
Tssr91203 9 103365859 to 103365901 42 - TSS region transcription start site region 91203
Tssr86785 9 103367536 to 103367577 41 + TSS region transcription start site region 86785
Tssr86786 9 103368531 to 103368533 2 + TSS region transcription start site region 86786
Gm29600 9 103409169 to 103409545 376 + pseudogene predicted gene 29600
Gm47328 9 103412358 to 103423200 10842 - lincRNA gene predicted gene, 47328
D9Mit242 9 103413367 to 103413516 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 242
D9Mgc25 9 103414289 to 103414439 150 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 25
Tssr86787 9 103423044 to 103423047 3 + TSS region transcription start site region 86787
Tssr86788 9 103423072 to 103423085 13 + TSS region transcription start site region 86788
Tssr86789 9 103423119 to 103423131 12 + TSS region transcription start site region 86789
Tssr86790 9 103423146 to 103423149 3 + TSS region transcription start site region 86790
Tssr86791 9 103423566 to 103423579 13 + TSS region transcription start site region 86791
5830418P13Rik 9 103423578 to 103461260 37682 + antisense lncRNA gene RIKEN cDNA 5830418P13 gene
Tssr91204 9 103424915 to 103424924 9 - TSS region transcription start site region 91204
Bfsp2 9 103424924 to 103480328 55404 - protein coding gene beaded filament structural protein 2, phakinin
Tssr91205 9 103424972 to 103424994 22 - TSS region transcription start site region 91205
Tssr86792 9 103425064 to 103425067 3 + TSS region transcription start site region 86792
Tssr86793 9 103425124 to 103425173 49 + TSS region transcription start site region 86793
Tssr91206 9 103426438 to 103426451 13 - TSS region transcription start site region 91206
Tssr86794 9 103426543 to 103426558 15 + TSS region transcription start site region 86794
Tssr86795 9 103426585 to 103426606 21 + TSS region transcription start site region 86795
Tssr86796 9 103426621 to 103426631 10 + TSS region transcription start site region 86796
Tssr86797 9 103426637 to 103426647 10 + TSS region transcription start site region 86797
Tssr86798 9 103426672 to 103426675 3 + TSS region transcription start site region 86798
Tssr86799 9 103427486 to 103427501 15 + TSS region transcription start site region 86799
D9Mgc26 9 103438227 to 103438476 249 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 26
Tssr86800 9 103442516 to 103442544 28 + TSS region transcription start site region 86800
Tssr91207 9 103449108 to 103449117 9 - TSS region transcription start site region 91207
Tssr91208 9 103449153 to 103449168 15 - TSS region transcription start site region 91208
Tssr91209 9 103449170 to 103449181 11 - TSS region transcription start site region 91209
Tssr91210 9 103449892 to 103449920 28 - TSS region transcription start site region 91210
Tssr86801 9 103457592 to 103457607 15 + TSS region transcription start site region 86801
D9Mgc27 9 103465285 to 103465550 265 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 27
Gm16252 9 103472084 to 103493249 21165 + antisense lncRNA gene predicted gene 16252
Tssr91211 9 103480224 to 103480263 39 - TSS region transcription start site region 91211
Tssr91212 9 103480266 to 103480269 3 - TSS region transcription start site region 91212
Tssr91213 9 103480304 to 103480315 11 - TSS region transcription start site region 91213
Tssr91214 9 103480336 to 103480348 12 - TSS region transcription start site region 91214
Tssr91215 9 103480366 to 103480373 7 - TSS region transcription start site region 91215
Tmem108 9 103482947 to 103761837 278890 - protein coding gene transmembrane protein 108
Tssr91216 9 103489301 to 103489310 9 - TSS region transcription start site region 91216
Tssr91217 9 103489321 to 103489344 23 - TSS region transcription start site region 91217
Tssr91218 9 103489349 to 103489376 27 - TSS region transcription start site region 91218
Tssr91219 9 103499221 to 103499260 39 - TSS region transcription start site region 91219
Tssr91220 9 103499292 to 103499299 7 - TSS region transcription start site region 91220
Tssr91221 9 103499320 to 103499326 6 - TSS region transcription start site region 91221
Tssr91222 9 103500355 to 103500401 46 - TSS region transcription start site region 91222
Tssr91223 9 103507086 to 103507126 40 - TSS region transcription start site region 91223
Gm32743 9 103521787 to 103545977 24190 + antisense lncRNA gene predicted gene, 32743
Gm26360 9 103526817 to 103526919 102 - snRNA gene predicted gene, 26360
D9Dcr45 9 103531214 to 103531316 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 45
Gm37649 9 103541303 to 103543534 2231 - unclassified gene predicted gene, 37649
4932413F04Rik 9 103557090 to 103565891 8801 + antisense lncRNA gene RIKEN cDNA 4932413F04 gene
Gm32682 9 103573387 to 103602847 29460 + lncRNA gene predicted gene, 32682
Gm38032 9 103598576 to 103600164 1588 - unclassified gene predicted gene, 38032
D9Mit14.1 9 103600890 to 103601062 172 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 14.1
D9Mit14 9 103601139 to 103601214 75 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 14
Tssr91224 9 103692759 to 103692770 11 - TSS region transcription start site region 91224
Tssr91225 9 103692785 to 103692812 27 - TSS region transcription start site region 91225
Cpgi22236 9 103708759 to 103708940 181 CpG island CpG island 22236
Gm46129 9 103709884 to 103732771 22887 + lncRNA gene predicted gene, 46129
Tssr86802 9 103721263 to 103721306 43 + TSS region transcription start site region 86802
Tssr91226 9 103729367 to 103729403 36 - TSS region transcription start site region 91226
Siim2 9 103748483 to 103748483 0 QTL stress induced immobility 2
Cpgi22237 9 103761092 to 103762139 1047 CpG island CpG island 22237
Tssr91227 9 103761788 to 103761816 28 - TSS region transcription start site region 91227
Tssr91228 9 103761820 to 103761847 27 - TSS region transcription start site region 91228
D9Mgc28 9 103769753 to 103769941 188 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 28
D9Dcr46 9 103809390 to 103809490 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 46
D9Dcr47 9 103855075 to 103855173 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 47
Gm5372 9 103888009 to 103888417 408 + pseudogene predicted gene 5372
D9Mgc29 9 103888420 to 103888554 134 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 29
Gm29154 9 103919392 to 103960323 40931 - lincRNA gene predicted gene 29154
D9Dcr48 9 103921311 to 103921411 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 48
Gm32797 9 103944958 to 103948602 3644 + lncRNA gene predicted gene, 32797
Gm33054 9 104001760 to 104002339 579 - lincRNA gene predicted gene, 33054
Cpgi22238 9 104002048 to 104003362 1314 CpG island CpG island 22238
Tssr91229 9 104002350 to 104002362 12 - TSS region transcription start site region 91229
Nphp3 9 104002544 to 104043811 41267 + protein coding gene nephronophthisis 3 (adolescent)
Tssr86803 9 104002725 to 104002776 51 + TSS region transcription start site region 86803
D9Mgc30 9 104032462 to 104032607 145 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 30
Tssr86804 9 104035510 to 104035533 23 + TSS region transcription start site region 86804
Gm28305 9 104040662 to 104075879 35217 + protein coding gene predicted gene 28305
Gm37200 9 104043605 to 104045776 2171 - unclassified gene predicted gene, 37200
Gm18998 9 104045718 to 104046359 641 + pseudogene predicted gene, 18998
Uba5 9 104046599 to 104063134 16535 - protein coding gene ubiquitin-like modifier activating enzyme 5
Gm37750 9 104053327 to 104053455 128 + unclassified gene predicted gene, 37750
Cpgi22239 9 104062544 to 104063834 1290 CpG island CpG island 22239
Tssr91230 9 104063049 to 104063146 97 - TSS region transcription start site region 91230
Tssr86805 9 104063376 to 104063415 39 + TSS region transcription start site region 86805
Tssr86806 9 104063678 to 104063710 32 + TSS region transcription start site region 86806
Acad11 9 104063703 to 104127646 63943 + protein coding gene acyl-Coenzyme A dehydrogenase family, member 11
Tssr86807 9 104063716 to 104063736 20 + TSS region transcription start site region 86807
Tssr86808 9 104074064 to 104074070 6 + TSS region transcription start site region 86808
Tssr86809 9 104076403 to 104076438 35 + TSS region transcription start site region 86809
D9Dcr49 9 104076611 to 104076706 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 49
Ackr4 9 104097682 to 104126643 28961 - protein coding gene atypical chemokine receptor 4
Gm47000 9 104101135 to 104101613 478 + unclassified gene predicted gene, 47000
Tssr91231 9 104102316 to 104102340 24 - TSS region transcription start site region 91231
Tssr91232 9 104102342 to 104102363 21 - TSS region transcription start site region 91232
Tssr91233 9 104102428 to 104102447 19 - TSS region transcription start site region 91233
Tssr91234 9 104102550 to 104102568 18 - TSS region transcription start site region 91234
Tssr2998 9 104102578 to 104102611 33 - TSS region transcription start site region 2998
Tssr91235 9 104103001 to 104103016 15 - TSS region transcription start site region 91235
Gm46999 9 104104436 to 104104800 364 + unclassified gene predicted gene, 46999
D9Mit148 9 104115679 to 104115825 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 148
D9Dcr50 9 104115730 to 104115829 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 50
Tssr86810 9 104116104 to 104116105 1 + TSS region transcription start site region 86810
D9Dcr51 9 104122763 to 104122857 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 51
Dnajc13 9 104151597 to 104263172 111575 - protein coding gene DnaJ heat shock protein family (Hsp40) member C13
D9Dcr52 9 104163459 to 104163563 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 52
Hmgb1-rs16 9 104169418 to 104169874 456 - pseudogene high mobility group box 1, related sequence 16