Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:103227954-103428210

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20425 9 103190208 to 103230307 40099 - protein coding gene predicted gene 20425
Trf 9 103208876 to 103230286 21410 - protein coding gene transferrin
Tssr86782 9 103227923 to 103227996 73 + TSS region transcription start site region 86782
Tssr91178 9 103227945 to 103227982 37 - TSS region transcription start site region 91178
Tssr91179 9 103227993 to 103228040 47 - TSS region transcription start site region 91179
Tssr91180 9 103228051 to 103228072 21 - TSS region transcription start site region 91180
Tssr91181 9 103228420 to 103228437 17 - TSS region transcription start site region 91181
Tssr91182 9 103228450 to 103228457 7 - TSS region transcription start site region 91182
Cpgi22233 9 103230137 to 103230438 301 CpG island CpG island 22233
Tssr91183 9 103230262 to 103230280 18 - TSS region transcription start site region 91183
Tssr91184 9 103230296 to 103230309 13 - TSS region transcription start site region 91184
D9Mit24 9 103230401 to 103230530 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 24
Bbaa17 9 103230401 to 103230530 129 QTL B.burgdorferi-associated arthritis 17
Tssr91185 9 103230415 to 103230430 15 - TSS region transcription start site region 91185
1300017J02Rik 9 103250523 to 103288297 37774 - protein coding gene RIKEN cDNA 1300017J02 gene
D9Mit347 9 103257298 to 103257420 122 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 347
Tssr91186 9 103259494 to 103259518 24 - TSS region transcription start site region 91186
Gm31701 9 103260343 to 103265874 5531 + lncRNA gene predicted gene, 31701
D9Mgc21 9 103288081 to 103288378 297 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 21
Tssr91187 9 103288225 to 103288256 31 - TSS region transcription start site region 91187
D9Mgc23 9 103288238 to 103288496 258 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 23
Tssr91188 9 103288270 to 103288281 11 - TSS region transcription start site region 91188
Tssr91189 9 103288290 to 103288307 17 - TSS region transcription start site region 91189
Cpgi22234 9 103304803 to 103305735 932 CpG island CpG island 22234
Tssr91190 9 103305049 to 103305084 35 - TSS region transcription start site region 91190
Tssr86783 9 103305156 to 103305255 99 + TSS region transcription start site region 86783
Topbp1 9 103305215 to 103350428 45213 + protein coding gene topoisomerase (DNA) II binding protein 1
D9Mgc20 9 103327954 to 103328210 256 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 20
Tssr86784 9 103331176 to 103331180 4 + TSS region transcription start site region 86784
Tssr91191 9 103347720 to 103347724 4 - TSS region transcription start site region 91191
Cdv3 9 103353102 to 103365835 12733 - protein coding gene carnitine deficiency-associated gene expressed in ventricle 3
D9Mgc22 9 103357305 to 103357403 98 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 22
Tssr91192 9 103358620 to 103358624 4 - TSS region transcription start site region 91192
Cpgi22235 9 103364482 to 103366217 1735 CpG island CpG island 22235
Tssr91193 9 103364782 to 103364845 63 - TSS region transcription start site region 91193
Tssr91194 9 103364939 to 103364964 25 - TSS region transcription start site region 91194
Tssr91195 9 103364970 to 103364996 26 - TSS region transcription start site region 91195
Tssr91196 9 103365371 to 103365408 37 - TSS region transcription start site region 91196
Tssr91197 9 103365421 to 103365480 59 - TSS region transcription start site region 91197
Tssr91198 9 103365599 to 103365613 14 - TSS region transcription start site region 91198
Tssr91199 9 103365623 to 103365694 71 - TSS region transcription start site region 91199
Tssr91200 9 103365731 to 103365739 8 - TSS region transcription start site region 91200
Tssr91201 9 103365744 to 103365756 12 - TSS region transcription start site region 91201
Tssr91202 9 103365769 to 103365785 16 - TSS region transcription start site region 91202
Tssr91203 9 103365859 to 103365901 42 - TSS region transcription start site region 91203
Tssr86785 9 103367536 to 103367577 41 + TSS region transcription start site region 86785
Tssr86786 9 103368531 to 103368533 2 + TSS region transcription start site region 86786
Gm29600 9 103409169 to 103409545 376 + pseudogene predicted gene 29600
Gm47328 9 103412358 to 103423200 10842 - lincRNA gene predicted gene, 47328
D9Mit242 9 103413367 to 103413516 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 242
D9Mgc25 9 103414289 to 103414439 150 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 25
Tssr86787 9 103423044 to 103423047 3 + TSS region transcription start site region 86787
Tssr86788 9 103423072 to 103423085 13 + TSS region transcription start site region 86788
Tssr86789 9 103423119 to 103423131 12 + TSS region transcription start site region 86789
Tssr86790 9 103423146 to 103423149 3 + TSS region transcription start site region 86790
Tssr86791 9 103423566 to 103423579 13 + TSS region transcription start site region 86791
5830418P13Rik 9 103423578 to 103461260 37682 + antisense lncRNA gene RIKEN cDNA 5830418P13 gene
Tssr91204 9 103424915 to 103424924 9 - TSS region transcription start site region 91204
Bfsp2 9 103424924 to 103480328 55404 - protein coding gene beaded filament structural protein 2, phakinin
Tssr91205 9 103424972 to 103424994 22 - TSS region transcription start site region 91205
Tssr86792 9 103425064 to 103425067 3 + TSS region transcription start site region 86792
Tssr86793 9 103425124 to 103425173 49 + TSS region transcription start site region 86793
Tssr91206 9 103426438 to 103426451 13 - TSS region transcription start site region 91206
Tssr86794 9 103426543 to 103426558 15 + TSS region transcription start site region 86794
Tssr86795 9 103426585 to 103426606 21 + TSS region transcription start site region 86795
Tssr86796 9 103426621 to 103426631 10 + TSS region transcription start site region 86796
Tssr86797 9 103426637 to 103426647 10 + TSS region transcription start site region 86797
Tssr86798 9 103426672 to 103426675 3 + TSS region transcription start site region 86798
Tssr86799 9 103427486 to 103427501 15 + TSS region transcription start site region 86799