Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:102872589-103522620

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202 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ryk 9 102834920 to 102908307 73387 + protein coding gene receptor-like tyrosine kinase
Tssr86744 9 102900203 to 102900210 7 + TSS region transcription start site region 86744
D9Dcr42 9 102922092 to 102922187 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 42
D9Mgc24 9 102977703 to 102977807 104 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 24
Tssr86745 9 102988746 to 102988752 6 + TSS region transcription start site region 86745
Tssr86746 9 102988757 to 102988788 31 + TSS region transcription start site region 86746
Gm31434 9 102989619 to 103002227 12608 - lncRNA gene predicted gene, 31434
Gm25842 9 102991895 to 102992216 321 + unclassified non-coding RNA gene predicted gene, 25842
Slco2a1 9 103007667 to 103087849 80182 + protein coding gene solute carrier organic anion transporter family, member 2a1
Cpgi22227 9 103007791 to 103009012 1221 CpG island CpG island 22227
Tssr86747 9 103007930 to 103007952 22 + TSS region transcription start site region 86747
Tssr86748 9 103007955 to 103007976 21 + TSS region transcription start site region 86748
Tssr86749 9 103007980 to 103007987 7 + TSS region transcription start site region 86749
Tssr86750 9 103008175 to 103008184 9 + TSS region transcription start site region 86750
Tssr86751 9 103008479 to 103008497 18 + TSS region transcription start site region 86751
n-R5s89 9 103011417 to 103011520 103 - rRNA gene nuclear encoded rRNA 5S 89
Tssr86752 9 103011504 to 103011509 5 + TSS region transcription start site region 86752
D9Mgc15 9 103015892 to 103016165 273 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 15
Gm22595 9 103022337 to 103022466 129 - snoRNA gene predicted gene, 22595
Tssr86753 9 103031467 to 103031472 5 + TSS region transcription start site region 86753
Tssr86754 9 103050238 to 103050260 22 + TSS region transcription start site region 86754
Gm47468 9 103082741 to 103085537 2796 - antisense lncRNA gene predicted gene, 47468
Tssr86755 9 103085854 to 103085876 22 + TSS region transcription start site region 86755
Tssr86756 9 103085878 to 103085898 20 + TSS region transcription start site region 86756
Tssr86757 9 103085903 to 103085984 81 + TSS region transcription start site region 86757
Cpgi22228 9 103092205 to 103092650 445 CpG island CpG island 22228
D9Mit169 9 103102384 to 103102503 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 169
Gm46128 9 103104504 to 103114026 9522 - lncRNA gene predicted gene, 46128
D9Mit276 9 103110764 to 103110886 122 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 276
Cpgi22229 9 103111135 to 103112965 1830 CpG island CpG island 22229
Tssr86758 9 103111726 to 103111737 11 + TSS region transcription start site region 86758
Tssr86759 9 103111741 to 103111866 125 + TSS region transcription start site region 86759
Tssr86760 9 103111875 to 103111892 17 + TSS region transcription start site region 86760
Tssr86761 9 103111937 to 103111990 53 + TSS region transcription start site region 86761
Tssr86762 9 103111991 to 103112006 15 + TSS region transcription start site region 86762
Tssr86763 9 103112038 to 103112045 7 + TSS region transcription start site region 86763
Tssr86764 9 103112049 to 103112056 7 + TSS region transcription start site region 86764
Tssr86765 9 103112063 to 103112068 5 + TSS region transcription start site region 86765
Tssr86766 9 103112072 to 103112093 21 + TSS region transcription start site region 86766
Rab6b 9 103112074 to 103185276 73202 + protein coding gene RAB6B, member RAS oncogene family
Tssr86767 9 103112094 to 103112149 55 + TSS region transcription start site region 86767
Cpgi22230 9 103119241 to 103119534 293 CpG island CpG island 22230
Gm37166 9 103120368 to 103122841 2473 + unclassified gene predicted gene, 37166
Tssr86768 9 103143366 to 103143385 19 + TSS region transcription start site region 86768
D9Dcr43 9 103144422 to 103144517 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 43
D9Mgc17 9 103151042 to 103151359 317 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 17
D9Mgc18 9 103169184 to 103169312 128 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 18
Cpgi22231 9 103181088 to 103181316 228 CpG island CpG island 22231
Tssr86769 9 103181388 to 103181429 41 + TSS region transcription start site region 86769
Tssr86770 9 103181451 to 103181469 18 + TSS region transcription start site region 86770
Tssr86771 9 103183337 to 103183348 11 + TSS region transcription start site region 86771
Tssr86772 9 103183365 to 103183377 12 + TSS region transcription start site region 86772
D9Dcr44 9 103186669 to 103186764 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 44
Srprb 9 103188033 to 103202065 14032 - protein coding gene signal recognition particle receptor, B subunit
Gm20425 9 103190208 to 103230307 40099 - protein coding gene predicted gene 20425
Tssr91135 9 103197589 to 103197620 31 - TSS region transcription start site region 91135
Cpgi22232 9 103201655 to 103202244 589 CpG island CpG island 22232
Tssr91136 9 103202056 to 103202110 54 - TSS region transcription start site region 91136
Tssr91137 9 103202113 to 103202136 23 - TSS region transcription start site region 91137
Tssr86773 9 103208875 to 103208903 28 + TSS region transcription start site region 86773
Trf 9 103208876 to 103230286 21410 - protein coding gene transferrin
Tssr91138 9 103208894 to 103208971 77 - TSS region transcription start site region 91138
Tssr91139 9 103208984 to 103208993 9 - TSS region transcription start site region 91139
Tssr91140 9 103209002 to 103209015 13 - TSS region transcription start site region 91140
Tssr91141 9 103209040 to 103209050 10 - TSS region transcription start site region 91141
Tssr91142 9 103209077 to 103209091 14 - TSS region transcription start site region 91142
Tssr91143 9 103210525 to 103210615 90 - TSS region transcription start site region 91143
Tssr91144 9 103210616 to 103210672 56 - TSS region transcription start site region 91144
Tssr91145 9 103211833 to 103211853 20 - TSS region transcription start site region 91145
Tssr91146 9 103211863 to 103211870 7 - TSS region transcription start site region 91146
Tssr91147 9 103211876 to 103211924 48 - TSS region transcription start site region 91147
Tssr91148 9 103211927 to 103211998 71 - TSS region transcription start site region 91148
Tssr91149 9 103214412 to 103214475 63 - TSS region transcription start site region 91149
Tssr91150 9 103214532 to 103214543 11 - TSS region transcription start site region 91150
Tssr91151 9 103215219 to 103215270 51 - TSS region transcription start site region 91151
Tssr86774 9 103215808 to 103215857 49 + TSS region transcription start site region 86774
Tssr91152 9 103215838 to 103215936 98 - TSS region transcription start site region 91152
Tssr91153 9 103215937 to 103215945 8 - TSS region transcription start site region 91153
Tssr86775 9 103217359 to 103217388 29 + TSS region transcription start site region 86775
Tssr91154 9 103217390 to 103217440 50 - TSS region transcription start site region 91154
Tssr2996 9 103217439 to 103217471 32 + TSS region transcription start site region 2996
Tssr91155 9 103217443 to 103217459 16 - TSS region transcription start site region 91155
Tssr91156 9 103217475 to 103217528 53 - TSS region transcription start site region 91156
Tssr91157 9 103219246 to 103219260 14 - TSS region transcription start site region 91157
Tssr91158 9 103219823 to 103219895 72 - TSS region transcription start site region 91158
Tssr86776 9 103219838 to 103219862 24 + TSS region transcription start site region 86776
Tssr86777 9 103220901 to 103220934 33 + TSS region transcription start site region 86777
Tssr91159 9 103220927 to 103220939 12 - TSS region transcription start site region 91159
Tssr2997 9 103220936 to 103220951 15 + TSS region transcription start site region 2997
Tssr91160 9 103220942 to 103220953 11 - TSS region transcription start site region 91160
Tssr91161 9 103220963 to 103220974 11 - TSS region transcription start site region 91161
Tssr86778 9 103220980 to 103220991 11 + TSS region transcription start site region 86778
Tssr91162 9 103221005 to 103221016 11 - TSS region transcription start site region 91162
Tssr91163 9 103221026 to 103221049 23 - TSS region transcription start site region 91163
Tssr91164 9 103221559 to 103221566 7 - TSS region transcription start site region 91164
Tssr91165 9 103222080 to 103222149 69 - TSS region transcription start site region 91165
Tssr91166 9 103222182 to 103222191 9 - TSS region transcription start site region 91166
Tssr91167 9 103222199 to 103222210 11 - TSS region transcription start site region 91167
Tssr91168 9 103222995 to 103223120 125 - TSS region transcription start site region 91168
Tssr86779 9 103223009 to 103223038 29 + TSS region transcription start site region 86779
Tssr91169 9 103223609 to 103223642 33 - TSS region transcription start site region 91169
Tssr86780 9 103225059 to 103225079 20 + TSS region transcription start site region 86780
Tssr91170 9 103225074 to 103225162 88 - TSS region transcription start site region 91170
Tssr91171 9 103225164 to 103225173 9 - TSS region transcription start site region 91171
Tssr91172 9 103225980 to 103226046 66 - TSS region transcription start site region 91172
Tssr91173 9 103226052 to 103226069 17 - TSS region transcription start site region 91173
Tssr91174 9 103226075 to 103226098 23 - TSS region transcription start site region 91174
Tssr91175 9 103226124 to 103226143 19 - TSS region transcription start site region 91175
Tssr86781 9 103226832 to 103226843 11 + TSS region transcription start site region 86781
Tssr91176 9 103226887 to 103226920 33 - TSS region transcription start site region 91176
Tssr91177 9 103226936 to 103226982 46 - TSS region transcription start site region 91177
Tssr86782 9 103227923 to 103227996 73 + TSS region transcription start site region 86782
Tssr91178 9 103227945 to 103227982 37 - TSS region transcription start site region 91178
Tssr91179 9 103227993 to 103228040 47 - TSS region transcription start site region 91179
Tssr91180 9 103228051 to 103228072 21 - TSS region transcription start site region 91180
Tssr91181 9 103228420 to 103228437 17 - TSS region transcription start site region 91181
Tssr91182 9 103228450 to 103228457 7 - TSS region transcription start site region 91182
Cpgi22233 9 103230137 to 103230438 301 CpG island CpG island 22233
Tssr91183 9 103230262 to 103230280 18 - TSS region transcription start site region 91183
Tssr91184 9 103230296 to 103230309 13 - TSS region transcription start site region 91184
Bbaa17 9 103230401 to 103230530 129 QTL B.burgdorferi-associated arthritis 17
D9Mit24 9 103230401 to 103230530 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 24
Tssr91185 9 103230415 to 103230430 15 - TSS region transcription start site region 91185
1300017J02Rik 9 103250523 to 103288297 37774 - protein coding gene RIKEN cDNA 1300017J02 gene
D9Mit347 9 103257298 to 103257420 122 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 347
Tssr91186 9 103259494 to 103259518 24 - TSS region transcription start site region 91186
Gm31701 9 103260343 to 103265874 5531 + lncRNA gene predicted gene, 31701
D9Mgc21 9 103288081 to 103288378 297 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 21
Tssr91187 9 103288225 to 103288256 31 - TSS region transcription start site region 91187
D9Mgc23 9 103288238 to 103288496 258 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 23
Tssr91188 9 103288270 to 103288281 11 - TSS region transcription start site region 91188
Tssr91189 9 103288290 to 103288307 17 - TSS region transcription start site region 91189
Cpgi22234 9 103304803 to 103305735 932 CpG island CpG island 22234
Tssr91190 9 103305049 to 103305084 35 - TSS region transcription start site region 91190
Tssr86783 9 103305156 to 103305255 99 + TSS region transcription start site region 86783
Topbp1 9 103305215 to 103350428 45213 + protein coding gene topoisomerase (DNA) II binding protein 1
D9Mgc20 9 103327954 to 103328210 256 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 20
Tssr86784 9 103331176 to 103331180 4 + TSS region transcription start site region 86784
Tssr91191 9 103347720 to 103347724 4 - TSS region transcription start site region 91191
Cdv3 9 103353102 to 103365835 12733 - protein coding gene carnitine deficiency-associated gene expressed in ventricle 3
D9Mgc22 9 103357305 to 103357403 98 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 22
Tssr91192 9 103358620 to 103358624 4 - TSS region transcription start site region 91192
Cpgi22235 9 103364482 to 103366217 1735 CpG island CpG island 22235
Tssr91193 9 103364782 to 103364845 63 - TSS region transcription start site region 91193
Tssr91194 9 103364939 to 103364964 25 - TSS region transcription start site region 91194
Tssr91195 9 103364970 to 103364996 26 - TSS region transcription start site region 91195
Tssr91196 9 103365371 to 103365408 37 - TSS region transcription start site region 91196
Tssr91197 9 103365421 to 103365480 59 - TSS region transcription start site region 91197
Tssr91198 9 103365599 to 103365613 14 - TSS region transcription start site region 91198
Tssr91199 9 103365623 to 103365694 71 - TSS region transcription start site region 91199
Tssr91200 9 103365731 to 103365739 8 - TSS region transcription start site region 91200
Tssr91201 9 103365744 to 103365756 12 - TSS region transcription start site region 91201
Tssr91202 9 103365769 to 103365785 16 - TSS region transcription start site region 91202
Tssr91203 9 103365859 to 103365901 42 - TSS region transcription start site region 91203
Tssr86785 9 103367536 to 103367577 41 + TSS region transcription start site region 86785
Tssr86786 9 103368531 to 103368533 2 + TSS region transcription start site region 86786
Gm29600 9 103409169 to 103409545 376 + pseudogene predicted gene 29600
Gm47328 9 103412358 to 103423200 10842 - lincRNA gene predicted gene, 47328
D9Mit242 9 103413367 to 103413516 149 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 242
D9Mgc25 9 103414289 to 103414439 150 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 25
Tssr86787 9 103423044 to 103423047 3 + TSS region transcription start site region 86787
Tssr86788 9 103423072 to 103423085 13 + TSS region transcription start site region 86788
Tssr86789 9 103423119 to 103423131 12 + TSS region transcription start site region 86789
Tssr86790 9 103423146 to 103423149 3 + TSS region transcription start site region 86790
Tssr86791 9 103423566 to 103423579 13 + TSS region transcription start site region 86791
5830418P13Rik 9 103423578 to 103461260 37682 + antisense lncRNA gene RIKEN cDNA 5830418P13 gene
Tssr91204 9 103424915 to 103424924 9 - TSS region transcription start site region 91204
Bfsp2 9 103424924 to 103480328 55404 - protein coding gene beaded filament structural protein 2, phakinin
Tssr91205 9 103424972 to 103424994 22 - TSS region transcription start site region 91205
Tssr86792 9 103425064 to 103425067 3 + TSS region transcription start site region 86792
Tssr86793 9 103425124 to 103425173 49 + TSS region transcription start site region 86793
Tssr91206 9 103426438 to 103426451 13 - TSS region transcription start site region 91206
Tssr86794 9 103426543 to 103426558 15 + TSS region transcription start site region 86794
Tssr86795 9 103426585 to 103426606 21 + TSS region transcription start site region 86795
Tssr86796 9 103426621 to 103426631 10 + TSS region transcription start site region 86796
Tssr86797 9 103426637 to 103426647 10 + TSS region transcription start site region 86797
Tssr86798 9 103426672 to 103426675 3 + TSS region transcription start site region 86798
Tssr86799 9 103427486 to 103427501 15 + TSS region transcription start site region 86799
D9Mgc26 9 103438227 to 103438476 249 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 26
Tssr86800 9 103442516 to 103442544 28 + TSS region transcription start site region 86800
Tssr91207 9 103449108 to 103449117 9 - TSS region transcription start site region 91207
Tssr91208 9 103449153 to 103449168 15 - TSS region transcription start site region 91208
Tssr91209 9 103449170 to 103449181 11 - TSS region transcription start site region 91209
Tssr91210 9 103449892 to 103449920 28 - TSS region transcription start site region 91210
Tssr86801 9 103457592 to 103457607 15 + TSS region transcription start site region 86801
D9Mgc27 9 103465285 to 103465550 265 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 27
Gm16252 9 103472084 to 103493249 21165 + antisense lncRNA gene predicted gene 16252
Tssr91211 9 103480224 to 103480263 39 - TSS region transcription start site region 91211
Tssr91212 9 103480266 to 103480269 3 - TSS region transcription start site region 91212
Tssr91213 9 103480304 to 103480315 11 - TSS region transcription start site region 91213
Tssr91214 9 103480336 to 103480348 12 - TSS region transcription start site region 91214
Tssr91215 9 103480366 to 103480373 7 - TSS region transcription start site region 91215
Tmem108 9 103482947 to 103761837 278890 - protein coding gene transmembrane protein 108
Tssr91216 9 103489301 to 103489310 9 - TSS region transcription start site region 91216
Tssr91217 9 103489321 to 103489344 23 - TSS region transcription start site region 91217
Tssr91218 9 103489349 to 103489376 27 - TSS region transcription start site region 91218
Tssr91219 9 103499221 to 103499260 39 - TSS region transcription start site region 91219
Tssr91220 9 103499292 to 103499299 7 - TSS region transcription start site region 91220
Tssr91221 9 103499320 to 103499326 6 - TSS region transcription start site region 91221
Tssr91222 9 103500355 to 103500401 46 - TSS region transcription start site region 91222