Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:101993096-103103182

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ephb1 9 101922128 to 102354693 432565 - protein coding gene Eph receptor B1
Tssr86720 9 102051716 to 102051717 1 + TSS region transcription start site region 86720
Gm37562 9 102052230 to 102056557 4327 - unclassified gene predicted gene, 37562
D9Mgc6 9 102096717 to 102096986 269 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 6
D9Mgc7 9 102104203 to 102104351 148 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 7
n-R5s88 9 102127888 to 102128005 117 + rRNA gene nuclear encoded rRNA 5S 88
D9Mgc8 9 102130303 to 102130471 168 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 8
D9Mit358 9 102138467 to 102138583 116 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 358
Gm29388 9 102151242 to 102153717 2475 - sense intronic lncRNA gene predicted gene 29388
Tssr86721 9 102172731 to 102172764 33 + TSS region transcription start site region 86721
Gm37945 9 102172738 to 102177104 4366 + unclassified gene predicted gene, 37945
Gm31233 9 102211762 to 102236746 24984 + lncRNA gene predicted gene, 31233
D9Mgc11 9 102264816 to 102264972 156 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 11
D9Mgc10 9 102264836 to 102264949 113 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 10
D9Mgc9 9 102265299 to 102265421 122 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 9
Gm37260 9 102273736 to 102274986 1250 + unclassified gene predicted gene, 37260
Tssr91122 9 102304512 to 102304527 15 - TSS region transcription start site region 91122
Mir7243 9 102304924 to 102304975 51 - miRNA gene microRNA 7243
D9Mgc32 9 102340681 to 102340847 166 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 32
Gm26846 9 102345903 to 102354694 8791 + lincRNA gene predicted gene, 26846
Cpgi22219 9 102352483 to 102354987 2504 CpG island CpG island 22219
Tssr91123 9 102354596 to 102354607 11 - TSS region transcription start site region 91123
Tssr91124 9 102354626 to 102354633 7 - TSS region transcription start site region 91124
Tssr91125 9 102354642 to 102354672 30 - TSS region transcription start site region 91125
Tssr91126 9 102354685 to 102354699 14 - TSS region transcription start site region 91126
Gm22894 9 102373118 to 102373220 102 + snRNA gene predicted gene, 22894
D9Ertd241e 9 102444859 to 102445063 204 DNA segment DNA segment, Chr 9, ERATO Doi 241, expressed
D9Mit357 9 102450352 to 102450497 145 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 357
D9Mgc12 9 102469782 to 102469931 149 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 12
Gm47983 9 102486790 to 102487080 290 + unclassified gene predicted gene, 47983
Ky 9 102505750 to 102546239 40489 + protein coding gene kyphoscoliosis peptidase
Cpgi22220 9 102505828 to 102506543 715 CpG island CpG island 22220
Tssr86722 9 102505961 to 102505972 11 + TSS region transcription start site region 86722
Tssr86723 9 102506072 to 102506092 20 + TSS region transcription start site region 86723
D9Mgc34 9 102532064 to 102532303 239 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 34
D9Mgc46e 9 102540739 to 102540897 158 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 46 expressed
D9Mgc35 9 102541624 to 102541730 106 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 35
Cpgi22221 9 102545190 to 102545367 177 CpG island CpG island 22221
Gm25669 9 102547766 to 102547877 111 + rRNA gene predicted gene, 25669
D9Mgc43 9 102548096 to 102548182 86 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 43
Gm7364 9 102551632 to 102553132 1500 + pseudogene predicted gene 7364
Gm29143 9 102556108 to 102556308 200 + pseudogene predicted gene 29143
Tssr86724 9 102559292 to 102559307 15 + TSS region transcription start site region 86724
Gm29387 9 102559300 to 102570708 11408 + lincRNA gene predicted gene 29387
D9Mgc36 9 102561681 to 102561810 129 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 36
Gm17950 9 102570582 to 102571227 645 - pseudogene predicted gene, 17950
Cep63 9 102586578 to 102626546 39968 - protein coding gene centrosomal protein 63
Tssr91127 9 102603571 to 102603573 2 - TSS region transcription start site region 91127
Tssr91128 9 102615511 to 102615549 38 - TSS region transcription start site region 91128
Tssr91129 9 102618890 to 102618904 14 - TSS region transcription start site region 91129
Cpgi22222 9 102625673 to 102626759 1086 CpG island CpG island 22222
Tssr91130 9 102626095 to 102626147 52 - TSS region transcription start site region 91130
Tssr91131 9 102626200 to 102626239 39 - TSS region transcription start site region 91131
Tssr86725 9 102626278 to 102626328 50 + TSS region transcription start site region 86725
Anapc13 9 102626296 to 102634244 7948 + protein coding gene anaphase promoting complex subunit 13
Tssr91132 9 102626537 to 102626564 27 - TSS region transcription start site region 91132
Tssr86726 9 102626564 to 102626603 39 + TSS region transcription start site region 86726
Tssr86727 9 102626618 to 102626686 68 + TSS region transcription start site region 86727
4933411K05Rik 9 102628511 to 102629726 1215 unclassified gene RIKEN cDNA 4933411K05 gene
Tssr91133 9 102628904 to 102628951 47 - TSS region transcription start site region 91133
D9Mgc38 9 102663278 to 102663370 92 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 38
D9Dcr41 9 102665601 to 102665699 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 41
Gm46150 9 102668957 to 102683813 14856 - lncRNA gene predicted gene, 46150
Cpgi22223 9 102689763 to 102690602 839 CpG island CpG island 22223
Tssr86728 9 102690671 to 102690693 22 + TSS region transcription start site region 86728
Tssr86729 9 102690733 to 102690755 22 + TSS region transcription start site region 86729
4930533D04Rik 9 102692885 to 102693834 949 + lincRNA gene RIKEN cDNA 4930533D04 gene
Tssr86730 9 102694349 to 102694354 5 + TSS region transcription start site region 86730
Gm36957 9 102698179 to 102701002 2823 - unclassified gene predicted gene, 36957
Tssr86731 9 102716692 to 102716704 12 + TSS region transcription start site region 86731
Cpgi22224 9 102717218 to 102718975 1757 CpG island CpG island 22224
Tssr86732 9 102717277 to 102717303 26 + TSS region transcription start site region 86732
Amotl2 9 102717294 to 102733418 16124 + protein coding gene angiomotin-like 2
Tssr91134 9 102717557 to 102717581 24 - TSS region transcription start site region 91134
Tssr86733 9 102717692 to 102717697 5 + TSS region transcription start site region 86733
Tssr86734 9 102717717 to 102717730 13 + TSS region transcription start site region 86734
Tssr86735 9 102717732 to 102717745 13 + TSS region transcription start site region 86735
Tssr86736 9 102717796 to 102717815 19 + TSS region transcription start site region 86736
Tssr86737 9 102718424 to 102718490 66 + TSS region transcription start site region 86737
Tssr86738 9 102720088 to 102720099 11 + TSS region transcription start site region 86738
Tssr86739 9 102720323 to 102720336 13 + TSS region transcription start site region 86739
Cpgi22225 9 102726385 to 102726659 274 CpG island CpG island 22225
Gm5627 9 102739648 to 102756685 17037 + lincRNA gene predicted gene 5627
D9Mgc14 9 102750452 to 102750601 149 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 14
Gm36958 9 102764635 to 102766509 1874 - unclassified gene predicted gene, 36958
Gm47416 9 102771495 to 102790260 18765 + lincRNA gene predicted gene, 47416
Gm46151 9 102775104 to 102778608 3504 - lncRNA gene predicted gene, 46151
Tssr2995 9 102819769 to 102819799 30 + TSS region transcription start site region 2995
Gm18655 9 102819861 to 102820940 1079 - pseudogene predicted gene, 18655
Cpgi22226 9 102834471 to 102835751 1280 CpG island CpG island 22226
Tssr86740 9 102834864 to 102834947 83 + TSS region transcription start site region 86740
Ryk 9 102834920 to 102908307 73387 + protein coding gene receptor-like tyrosine kinase
Tssr86741 9 102834961 to 102834972 11 + TSS region transcription start site region 86741
Tssr86742 9 102834979 to 102834990 11 + TSS region transcription start site region 86742
Gm47427 9 102851835 to 102852473 638 + unclassified gene predicted gene, 47427
Tssr86743 9 102864512 to 102864523 11 + TSS region transcription start site region 86743
Tssr86744 9 102900203 to 102900210 7 + TSS region transcription start site region 86744
D9Dcr42 9 102922092 to 102922187 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 42
D9Mgc24 9 102977703 to 102977807 104 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 24
Tssr86745 9 102988746 to 102988752 6 + TSS region transcription start site region 86745
Tssr86746 9 102988757 to 102988788 31 + TSS region transcription start site region 86746
Gm31434 9 102989619 to 103002227 12608 - lncRNA gene predicted gene, 31434
Gm25842 9 102991895 to 102992216 321 + unclassified non-coding RNA gene predicted gene, 25842
Slco2a1 9 103007667 to 103087849 80182 + protein coding gene solute carrier organic anion transporter family, member 2a1
Cpgi22227 9 103007791 to 103009012 1221 CpG island CpG island 22227
Tssr86747 9 103007930 to 103007952 22 + TSS region transcription start site region 86747
Tssr86748 9 103007955 to 103007976 21 + TSS region transcription start site region 86748
Tssr86749 9 103007980 to 103007987 7 + TSS region transcription start site region 86749
Tssr86750 9 103008175 to 103008184 9 + TSS region transcription start site region 86750
Tssr86751 9 103008479 to 103008497 18 + TSS region transcription start site region 86751
n-R5s89 9 103011417 to 103011520 103 - rRNA gene nuclear encoded rRNA 5S 89
Tssr86752 9 103011504 to 103011509 5 + TSS region transcription start site region 86752
D9Mgc15 9 103015892 to 103016165 273 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 15
Gm22595 9 103022337 to 103022466 129 - snoRNA gene predicted gene, 22595
Tssr86753 9 103031467 to 103031472 5 + TSS region transcription start site region 86753
Tssr86754 9 103050238 to 103050260 22 + TSS region transcription start site region 86754
Gm47468 9 103082741 to 103085537 2796 - antisense lncRNA gene predicted gene, 47468
Tssr86755 9 103085854 to 103085876 22 + TSS region transcription start site region 86755
Tssr86756 9 103085878 to 103085898 20 + TSS region transcription start site region 86756
Tssr86757 9 103085903 to 103085984 81 + TSS region transcription start site region 86757
Cpgi22228 9 103092205 to 103092650 445 CpG island CpG island 22228
D9Mit169 9 103102384 to 103102503 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 169