Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:101038818-102018916

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr86715 9 101053514 to 101053534 20 + TSS region transcription start site region 86715
Gm3096 9 101053542 to 101053905 363 + pseudogene predicted gene 3096
Gm46140 9 101070745 to 101073186 2441 - pseudogene predicted gene, 46140
Tssr91104 9 101071150 to 101071151 1 - TSS region transcription start site region 91104
Cpgi22217 9 101073316 to 101075527 2211 CpG island CpG island 22217
Tssr2989 9 101074042 to 101074077 35 + TSS region transcription start site region 2989
Tssr2990 9 101074092 to 101074112 20 + TSS region transcription start site region 2990
Msl2 9 101074101 to 101104800 30699 + protein coding gene MSL complex subunit 2
Tssr2991 9 101074122 to 101074140 18 + TSS region transcription start site region 2991
Tssr2992 9 101074387 to 101074453 66 - TSS region transcription start site region 2992
Tssr2993 9 101074583 to 101074675 92 + TSS region transcription start site region 2993
Tssr2994 9 101074681 to 101074707 26 + TSS region transcription start site region 2994
Gm37553 9 101092977 to 101094578 1601 + unclassified gene predicted gene, 37553
Tssr86716 9 101097893 to 101097904 11 + TSS region transcription start site region 86716
Ppp2r3a 9 101105084 to 101251795 146711 - protein coding gene protein phosphatase 2, regulatory subunit B'', alpha
Gm37962 9 101113805 to 101115838 2033 + unclassified gene predicted gene, 37962
Gm37621 9 101116701 to 101122231 5530 + unclassified gene predicted gene, 37621
Tssr91105 9 101120728 to 101120732 4 - TSS region transcription start site region 91105
D9Dcr39 9 101127213 to 101127306 93 DNA segment DNA segment, Chr 9, Derry C. Roopenian 39
Gm37953 9 101150312 to 101152195 1883 + unclassified gene predicted gene, 37953
Gm38344 9 101186556 to 101187908 1352 - unclassified gene predicted gene, 38344
Tssr91106 9 101187781 to 101187785 4 - TSS region transcription start site region 91106
Gm37314 9 101188598 to 101191282 2684 - unclassified gene predicted gene, 37314
Tssr91107 9 101198940 to 101198954 14 - TSS region transcription start site region 91107
Tssr91108 9 101198976 to 101198997 21 - TSS region transcription start site region 91108
Tssr91109 9 101198999 to 101199080 81 - TSS region transcription start site region 91109
Tssr91110 9 101199081 to 101199088 7 - TSS region transcription start site region 91110
Gm24338 9 101222952 to 101223078 126 + snoRNA gene predicted gene, 24338
Tssr91111 9 101243726 to 101243741 15 - TSS region transcription start site region 91111
Cpgi22218 9 101250982 to 101252082 1100 CpG island CpG island 22218
Tssr91112 9 101251470 to 101251481 11 - TSS region transcription start site region 91112
Tssr86717 9 101251535 to 101251537 2 + TSS region transcription start site region 86717
Tssr91113 9 101251742 to 101251756 14 - TSS region transcription start site region 91113
Tssr91114 9 101251776 to 101251802 26 - TSS region transcription start site region 91114
Tssr91115 9 101251810 to 101251839 29 - TSS region transcription start site region 91115
Tssr91116 9 101251841 to 101251852 11 - TSS region transcription start site region 91116
Gm3121 9 101281368 to 101281773 405 - pseudogene predicted gene 3121
Gm28660 9 101337720 to 101337972 252 - pseudogene predicted gene 28660
Gm28979 9 101342194 to 101348017 5823 + lincRNA gene predicted gene 28979
Gm24638 9 101392979 to 101393110 131 - snoRNA gene predicted gene, 24638
Gm29385 9 101435683 to 101436045 362 - pseudogene predicted gene 29385
Gm5161 9 101448501 to 101449353 852 - pseudogene predicted pseudogene 5161
Nociq1 9 101528818 to 101528921 103 QTL nociceptive sensitivity inflammatory QTL 1
D9Mit182 9 101528818 to 101528921 103 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 182
D9Dcr40 9 101528818 to 101528916 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 40
Tbbmd4 9 101528921 to 76117105 -25411816 QTL total body bone mineral density 4
Dxmod 9 101528921 to 49541121 -51987800 QTL doxorubicin nephropathy modifier
D9Mgc1 9 101569128 to 101569282 154 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 1
D9Mit115 9 101612788 to 101612932 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 115
D9Mgc2 9 101657770 to 101657885 115 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 2
D9Mgc3 9 101740972 to 101741188 216 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 3
Gm47932 9 101754915 to 101757705 2790 - pseudogene predicted gene, 47932
Gm47933 9 101757753 to 101758863 1110 - pseudogene predicted gene, 47933
Gm47934 9 101758542 to 101758809 267 + pseudogene predicted gene, 47934
Gm29521 9 101770369 to 101862489 92120 - unclassified non-coding RNA gene predicted gene 29521
9630041A04Rik 9 101861841 to 101943228 81387 + protein coding gene RIKEN cDNA 9630041A04 gene
Tssr91117 9 101862394 to 101862401 7 - TSS region transcription start site region 91117
Tssr91118 9 101862411 to 101862426 15 - TSS region transcription start site region 91118
Tssr91119 9 101862443 to 101862465 22 - TSS region transcription start site region 91119
Tssr91120 9 101862497 to 101862508 11 - TSS region transcription start site region 91120
Tssr91121 9 101862657 to 101862666 9 - TSS region transcription start site region 91121
Gm37460 9 101911008 to 101913256 2248 - unclassified gene predicted gene, 37460
Ephb1 9 101922128 to 102354693 432565 - protein coding gene Eph receptor B1
D9Mgc4 9 101924870 to 101925178 308 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 4
D9Mgc5 9 101939585 to 101939845 260 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 5
Tssr86718 9 101989193 to 101989201 8 + TSS region transcription start site region 86718
Gm31326 9 101989260 to 101990307 1047 + lncRNA gene predicted gene, 31326
Tssr86719 9 101991750 to 101991776 26 + TSS region transcription start site region 86719