Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:9968958-10998970

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lig4 8 9970020 to 9977681 7661 - protein coding gene ligase IV, DNA, ATP-dependent
Cpgi20072 8 9976032 to 9976613 581 CpG island CpG island 20072
Tssr80333 8 9976215 to 9976254 39 - TSS region transcription start site region 80333
Tssr80334 8 9976266 to 9976286 20 - TSS region transcription start site region 80334
Tssr80335 8 9976294 to 9976335 41 - TSS region transcription start site region 80335
Tssr80336 8 9976340 to 9976355 15 - TSS region transcription start site region 80336
Cpgi20073 8 9977548 to 9978595 1047 CpG island CpG island 20073
Tssr80337 8 9977650 to 9977690 40 - TSS region transcription start site region 80337
Tssr76163 8 9977711 to 9977725 14 + TSS region transcription start site region 76163
Abhd13 8 9977717 to 9992155 14438 + protein coding gene abhydrolase domain containing 13
Tssr76164 8 9977733 to 9977763 30 + TSS region transcription start site region 76164
Tssr76165 8 9977766 to 9977788 22 + TSS region transcription start site region 76165
Tssr76166 8 9977810 to 9977848 38 + TSS region transcription start site region 76166
Tssr76167 8 9977851 to 9977872 21 + TSS region transcription start site region 76167
Gm10703 8 10003512 to 10007538 4026 protein coding gene predicted gene 10703
Tnfsf13b 8 10006203 to 10036000 29797 + protein coding gene tumor necrosis factor (ligand) superfamily, member 13b
Tssr76168 8 10006428 to 10006455 27 + TSS region transcription start site region 76168
Tssr76169 8 10006631 to 10006653 22 + TSS region transcription start site region 76169
Tssr76170 8 10006656 to 10006702 46 + TSS region transcription start site region 76170
Tssr76171 8 10006784 to 10006810 26 + TSS region transcription start site region 76171
Cpgi20074 8 10007070 to 10007574 504 CpG island CpG island 20074
Gm44789 8 10016427 to 10019527 3100 - unclassified gene predicted gene 44789
Gm44788 8 10065054 to 10119632 54578 + lincRNA gene predicted gene 44788
Cpgi20075 8 10153657 to 10154434 777 CpG island CpG island 20075
Myo16 8 10153911 to 10634742 480831 + protein coding gene myosin XVI
Tssr76172 8 10153940 to 10153984 44 + TSS region transcription start site region 76172
Tssr76173 8 10154096 to 10154158 62 + TSS region transcription start site region 76173
Tssr76174 8 10183313 to 10183334 21 + TSS region transcription start site region 76174
Tssr76175 8 10249189 to 10249200 11 + TSS region transcription start site region 76175
Cpgi20076 8 10249309 to 10249519 210 CpG island CpG island 20076
Tssr76176 8 10249334 to 10249366 32 + TSS region transcription start site region 76176
D8Mit285 8 10254729 to 10254814 85 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 285
Tssr76177 8 10435789 to 10435799 10 + TSS region transcription start site region 76177
Tssr76178 8 10481124 to 10481136 12 + TSS region transcription start site region 76178
Tssr76179 8 10481146 to 10481164 18 + TSS region transcription start site region 76179
Tssr80338 8 10483937 to 10483948 11 - TSS region transcription start site region 80338
Tssr80339 8 10483958 to 10483970 12 - TSS region transcription start site region 80339
Tssr80340 8 10484007 to 10484016 9 - TSS region transcription start site region 80340
Tssr76180 8 10484084 to 10484101 17 + TSS region transcription start site region 76180
Tssr80341 8 10534902 to 10534916 14 - TSS region transcription start site region 80341
D8Mit332 8 10616044 to 10616165 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 332
Tssr76181 8 10634749 to 10634762 13 + TSS region transcription start site region 76181
D8Mit255 8 10640866 to 10640971 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 255
Gm32330 8 10673361 to 10676646 3285 + lncRNA gene predicted gene, 32330
5330413D20Rik 8 10675348 to 10676913 1565 - lincRNA gene RIKEN cDNA 5330413D20 gene
Gm44786 8 10685351 to 10687390 2039 + lincRNA gene predicted gene 44786
Gm44785 8 10687948 to 10691706 3758 + lincRNA gene predicted gene 44785
Tssr80342 8 10695076 to 10695087 11 - TSS region transcription start site region 80342
Tssr2486 8 10705635 to 10705636 1 - TSS region transcription start site region 2486
Gm30666 8 10716707 to 10738674 21967 - pseudogene predicted gene, 30666
Gm44784 8 10723486 to 10725161 1675 + lincRNA gene predicted gene 44784
Gm45045 8 10732676 to 10736533 3857 + lincRNA gene predicted gene 45045
Gm39129 8 10738890 to 10770849 31959 + lincRNA gene predicted gene, 39129
Gm32429 8 10740250 to 10747285 7035 - lncRNA gene predicted gene, 32429
Tssr80343 8 10741001 to 10741027 26 - TSS region transcription start site region 80343
D8Mit1 8 10794081 to 10794305 224 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1
Rps16-ps3 8 10808688 to 10809128 440 - pseudogene ribosomal protein S16, pseudogene 3
Gm32485 8 10817012 to 10817721 709 - lncRNA gene predicted gene, 32485
Gm39130 8 10847429 to 10855147 7718 + lncRNA gene predicted gene, 39130
Tssr76182 8 10853411 to 10853420 9 + TSS region transcription start site region 76182
Gm32540 8 10858750 to 10866186 7436 - lincRNA gene predicted gene, 32540
Tssr80344 8 10865103 to 10865119 16 - TSS region transcription start site region 80344
Tssr80345 8 10865315 to 10865329 14 - TSS region transcription start site region 80345
Tssr80346 8 10865930 to 10865936 6 - TSS region transcription start site region 80346
Tssr80347 8 10865998 to 10866082 84 - TSS region transcription start site region 80347
D8Mit59 8 10867012 to 10867149 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 59
D8Mit59.1 8 10867119 to 10867232 113 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 59.1
B930025P03Rik 8 10870422 to 10882454 12032 - lincRNA gene RIKEN cDNA B930025P03 gene
Gm45044 8 10884453 to 10891591 7138 - lincRNA gene predicted gene 45044
Tssr80348 8 10892047 to 10892071 24 - TSS region transcription start site region 80348
Tssr80349 8 10892078 to 10892089 11 - TSS region transcription start site region 80349
Gm2814 8 10898169 to 10900558 2389 - lincRNA gene predicted gene 2814
Tssr76183 8 10899915 to 10899928 13 + TSS region transcription start site region 76183
4833411C07Rik 8 10899922 to 10902334 2412 + lncRNA gene RIKEN cDNA 4833411C07 gene
Tssr76184 8 10899947 to 10899956 9 + TSS region transcription start site region 76184
Tssr80350 8 10900540 to 10900563 23 - TSS region transcription start site region 80350
Tssr76185 8 10902046 to 10902061 15 + TSS region transcription start site region 76185
Gm32594 8 10919619 to 10921084 1465 - lncRNA gene predicted gene, 32594
D8Ertd130e 8 10920252 to 10920451 199 DNA segment DNA segment, Chr 8, ERATO Doi 130, expressed
3930402G23Rik 8 10924427 to 10928457 4030 - lincRNA gene RIKEN cDNA 3930402G23 gene
Tssr80351 8 10928449 to 10928464 15 - TSS region transcription start site region 80351
Gm45042 8 10929887 to 10930097 210 + pseudogene predicted gene 45042
D8Mit286 8 10939167 to 10939280 113 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 286
Gm44955 8 10943326 to 10947890 4564 - lincRNA gene predicted gene 44955
Cpgi20077 8 10946190 to 10946379 189 CpG island CpG island 20077
Tssr80352 8 10947806 to 10947820 14 - TSS region transcription start site region 80352
Tssr80353 8 10947821 to 10947845 24 - TSS region transcription start site region 80353
Tssr80354 8 10947853 to 10947862 9 - TSS region transcription start site region 80354
Gm44956 8 10962957 to 10970814 7857 - lincRNA gene predicted gene 44956
Cpgi20078 8 10978500 to 10978819 319 CpG island CpG island 20078
Irs2 8 10986961 to 11008430 21469 - protein coding gene insulin receptor substrate 2