Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:99214584-103864708

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdh8 8 99024471 to 99416471 392000 - protein coding gene cadherin 8
Tssr82575 8 99386713 to 99386717 4 - TSS region transcription start site region 82575
Gm15680 8 99397213 to 99506770 109557 - sense overlapping lncRNA gene predicted gene 15680
Cpgi20889 8 99415242 to 99417130 1888 CpG island CpG island 20889
Tssr82576 8 99416329 to 99416348 19 - TSS region transcription start site region 82576
Tssr82577 8 99416397 to 99416462 65 - TSS region transcription start site region 82577
Tssr82578 8 99416505 to 99416516 11 - TSS region transcription start site region 82578
Tssr79014 8 99416585 to 99416599 14 + TSS region transcription start site region 79014
A330008L17Rik 8 99416674 to 99733438 316764 + lincRNA gene RIKEN cDNA A330008L17 gene
Tssr82579 8 99446750 to 99446754 4 - TSS region transcription start site region 82579
Tssr79015 8 99663919 to 99663963 44 + TSS region transcription start site region 79015
Tssr79016 8 99664002 to 99664009 7 + TSS region transcription start site region 79016
Gm8688 8 99664019 to 99665407 1388 + pseudogene predicted gene 8688
Gm19232 8 99826987 to 99827638 651 - pseudogene predicted gene, 19232
Impdh2-ps 8 100030558 to 100032102 1544 + pseudogene inosine monophosphate dehydrogenase 2, pseudogene
Gm5742 8 100060116 to 100060620 504 + pseudogene predicted gene 5742
Tssr79017 8 100160606 to 100160610 4 + TSS region transcription start site region 79017
D8Dcr29 8 100270977 to 100271074 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 29
Gm45296 8 100438758 to 100438962 204 + pseudogene predicted gene 45296
D8Dcr30 8 100633182 to 100633287 105 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 30
Gm5361 8 100636519 to 100638013 1494 + pseudogene predicted gene 5361
Gm39232 8 100717098 to 100726321 9223 - lincRNA gene predicted gene, 39232
D8Mit183 8 101041544 to 101041692 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 183
D8Dcr31 8 101336904 to 101336999 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 31
D8Dcr32 8 101518319 to 101518431 112 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 32
Gm22223 8 101539584 to 101539708 124 - snoRNA gene predicted gene, 22223
Gm32423 8 101590997 to 101614593 23596 + lncRNA gene predicted gene, 32423
Tssr79018 8 101591006 to 101591010 4 + TSS region transcription start site region 79018
D8Dcr33 8 101737509 to 101737607 98 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 33
Gm32477 8 101759270 to 101766950 7680 - lncRNA gene predicted gene, 32477
D8Mit242 8 101759576 to 101759741 165 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 242
Desp1 8 101759576 to 101759741 165 QTL despair 1
Pgia22 8 101759576 to 115298718 13539142 QTL proteoglycan induced arthritis 22
Tgl1 8 101759576 to 110923404 9163828 QTL triglyceride level 1
Gm46070 8 101782958 to 101787866 4908 + lncRNA gene predicted gene, 46070
Tssr82580 8 101783850 to 101783884 34 - TSS region transcription start site region 82580
D8Dcr34 8 101820922 to 101821026 104 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 34
D8Mit184 8 101851464 to 101851609 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 184
D8Dcr35 8 102214103 to 102214202 99 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 35
Gm39233 8 102270509 to 102312596 42087 - lncRNA gene predicted gene, 39233
Acigg9 8 102332498 to 114373932 12041434 QTL anti COL7 IgG2b antibody 9
Gm24602 8 102523894 to 102523956 62 + snRNA gene predicted gene, 24602
Gm45422 8 102534645 to 102534890 245 + pseudogene predicted gene 45422
D8Dcr36 8 102565566 to 102565661 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 36
D8Dcr37 8 102622642 to 102622737 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 37
Cdh11 8 102632095 to 102785642 153547 - protein coding gene cadherin 11
Gm45257 8 102654191 to 102658188 3997 - unclassified gene predicted gene 45257
Gm42038 8 102660815 to 102663585 2770 + lncRNA gene predicted gene, 42038
Tssr82581 8 102681505 to 102681509 4 - TSS region transcription start site region 82581
9430099M06Rik 8 102706049 to 102706790 741 - unclassified gene RIKEN cDNA 9430099M06 gene
Heal14 8 102716921 to 102717069 148 QTL wound healing/regeneration 14
D8Mit211 8 102716921 to 102717069 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 211
Dntcs1 8 102716921 to 127055036 24338115 QTL dental caries susceptibility 1
Heal1 8 102716921 to 102717069 148 QTL wound healing/regeneration 1
Skmw2 8 102716921 to 102717069 148 QTL skeletal muscle weight 2
Tssr82582 8 102717243 to 102717254 11 - TSS region transcription start site region 82582
Gm26301 8 102732390 to 102732484 94 - miRNA gene predicted gene, 26301
Tssr82583 8 102739220 to 102739251 31 - TSS region transcription start site region 82583
Tssr82584 8 102739263 to 102739275 12 - TSS region transcription start site region 82584
Tssr82585 8 102739283 to 102739297 14 - TSS region transcription start site region 82585
Gm45258 8 102780190 to 102781042 852 - unclassified gene predicted gene 45258
Cpgi20890 8 102783766 to 102785587 1821 CpG island CpG island 20890
Tssr82586 8 102785069 to 102785089 20 - TSS region transcription start site region 82586
Tssr82587 8 102785093 to 102785114 21 - TSS region transcription start site region 82587
Tssr82588 8 102785344 to 102785395 51 - TSS region transcription start site region 82588
Tssr82589 8 102785765 to 102785776 11 - TSS region transcription start site region 82589
Cpgi20891 8 102786558 to 102786940 382 CpG island CpG island 20891
Tssr82590 8 102786631 to 102786651 20 - TSS region transcription start site region 82590
Gm8730 8 102864845 to 102865798 953 - pseudogene predicted pseudogene 8730
Tssr82591 8 102865868 to 102865876 8 - TSS region transcription start site region 82591
Gm45391 8 103130248 to 103144946 14698 - lincRNA gene predicted gene 45391
Tssr79019 8 103235875 to 103235901 26 + TSS region transcription start site region 79019
Gm32531 8 103271152 to 103276608 5456 + lincRNA gene predicted gene, 32531
Gm39234 8 103296749 to 103316593 19844 + lncRNA gene predicted gene, 39234
1600027J07Rik 8 103343878 to 103347534 3656 - lincRNA gene RIKEN cDNA 1600027J07 gene
D8Dcr38 8 103347441 to 103347542 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 38
Tssr82592 8 103347531 to 103347546 15 - TSS region transcription start site region 82592
Gm32589 8 103488996 to 103492625 3629 + lncRNA gene predicted gene, 32589
Gm45277 8 103531645 to 103563623 31978 - lincRNA gene predicted gene 45277
Gm32642 8 103568056 to 103571656 3600 - lncRNA gene predicted gene, 32642
Tssr2670 8 103590941 to 103590943 2 - TSS region transcription start site region 2670
Tssr79020 8 103603772 to 103603786 14 + TSS region transcription start site region 79020
Tssr79021 8 103603789 to 103603810 21 + TSS region transcription start site region 79021
4933400L20Rik 8 103603799 to 103680382 76583 + lincRNA gene RIKEN cDNA 4933400L20 gene
Gm39235 8 103722702 to 103728600 5898 + lncRNA gene predicted gene, 39235
Tssr2671 8 103802114 to 103802137 23 - TSS region transcription start site region 2671
D8Mit110 8 103861031 to 103861178 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 110