Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:98729584-104349708

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29817 8 98878726 to 98878897 171 - pseudogene predicted gene, 29817
Tssr79013 8 98882543 to 98882553 10 + TSS region transcription start site region 79013
Gm15679 8 99011886 to 99032740 20854 + antisense lncRNA gene predicted gene 15679
Cdh8 8 99024471 to 99416471 392000 - protein coding gene cadherin 8
Gm45297 8 99045927 to 99049409 3482 - unclassified gene predicted gene 45297
Gm24693 8 99072463 to 99072569 106 + snRNA gene predicted gene, 24693
Gm10632 8 99127367 to 99148253 20886 unclassified gene predicted gene 10632
Gm15681 8 99145386 to 99148089 2703 - pseudogene predicted gene 15681
Tssr82575 8 99386713 to 99386717 4 - TSS region transcription start site region 82575
Gm15680 8 99397213 to 99506770 109557 - sense overlapping lncRNA gene predicted gene 15680
Cpgi20889 8 99415242 to 99417130 1888 CpG island CpG island 20889
Tssr82576 8 99416329 to 99416348 19 - TSS region transcription start site region 82576
Tssr82577 8 99416397 to 99416462 65 - TSS region transcription start site region 82577
Tssr82578 8 99416505 to 99416516 11 - TSS region transcription start site region 82578
Tssr79014 8 99416585 to 99416599 14 + TSS region transcription start site region 79014
A330008L17Rik 8 99416674 to 99733438 316764 + lincRNA gene RIKEN cDNA A330008L17 gene
Tssr82579 8 99446750 to 99446754 4 - TSS region transcription start site region 82579
Tssr79015 8 99663919 to 99663963 44 + TSS region transcription start site region 79015
Tssr79016 8 99664002 to 99664009 7 + TSS region transcription start site region 79016
Gm8688 8 99664019 to 99665407 1388 + pseudogene predicted gene 8688
Gm19232 8 99826987 to 99827638 651 - pseudogene predicted gene, 19232
Impdh2-ps 8 100030558 to 100032102 1544 + pseudogene inosine monophosphate dehydrogenase 2, pseudogene
Gm5742 8 100060116 to 100060620 504 + pseudogene predicted gene 5742
Tssr79017 8 100160606 to 100160610 4 + TSS region transcription start site region 79017
D8Dcr29 8 100270977 to 100271074 97 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 29
Gm45296 8 100438758 to 100438962 204 + pseudogene predicted gene 45296
D8Dcr30 8 100633182 to 100633287 105 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 30
Gm5361 8 100636519 to 100638013 1494 + pseudogene predicted gene 5361
Gm39232 8 100717098 to 100726321 9223 - lincRNA gene predicted gene, 39232
D8Mit183 8 101041544 to 101041692 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 183
D8Dcr31 8 101336904 to 101336999 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 31
D8Dcr32 8 101518319 to 101518431 112 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 32
Gm22223 8 101539584 to 101539708 124 - snoRNA gene predicted gene, 22223
Gm32423 8 101590997 to 101614593 23596 + lncRNA gene predicted gene, 32423
Tssr79018 8 101591006 to 101591010 4 + TSS region transcription start site region 79018
D8Dcr33 8 101737509 to 101737607 98 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 33
Gm32477 8 101759270 to 101766950 7680 - lncRNA gene predicted gene, 32477
D8Mit242 8 101759576 to 101759741 165 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 242
Pgia22 8 101759576 to 115298718 13539142 QTL proteoglycan induced arthritis 22
Tgl1 8 101759576 to 110923404 9163828 QTL triglyceride level 1
Desp1 8 101759576 to 101759741 165 QTL despair 1
Gm46070 8 101782958 to 101787866 4908 + lncRNA gene predicted gene, 46070
Tssr82580 8 101783850 to 101783884 34 - TSS region transcription start site region 82580
D8Dcr34 8 101820922 to 101821026 104 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 34
D8Mit184 8 101851464 to 101851609 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 184
D8Dcr35 8 102214103 to 102214202 99 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 35
Gm39233 8 102270509 to 102312596 42087 - lncRNA gene predicted gene, 39233
Acigg9 8 102332498 to 114373932 12041434 QTL anti COL7 IgG2b antibody 9
Gm24602 8 102523894 to 102523956 62 + snRNA gene predicted gene, 24602
Gm45422 8 102534645 to 102534890 245 + pseudogene predicted gene 45422
D8Dcr36 8 102565566 to 102565661 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 36
D8Dcr37 8 102622642 to 102622737 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 37
Cdh11 8 102632095 to 102785642 153547 - protein coding gene cadherin 11
Gm45257 8 102654191 to 102658188 3997 - unclassified gene predicted gene 45257
Gm42038 8 102660815 to 102663585 2770 + lncRNA gene predicted gene, 42038
Tssr82581 8 102681505 to 102681509 4 - TSS region transcription start site region 82581
9430099M06Rik 8 102706049 to 102706790 741 - unclassified gene RIKEN cDNA 9430099M06 gene
Skmw2 8 102716921 to 102717069 148 QTL skeletal muscle weight 2
D8Mit211 8 102716921 to 102717069 148 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 211
Heal1 8 102716921 to 102717069 148 QTL wound healing/regeneration 1
Dntcs1 8 102716921 to 127055036 24338115 QTL dental caries susceptibility 1
Heal14 8 102716921 to 102717069 148 QTL wound healing/regeneration 14
Tssr82582 8 102717243 to 102717254 11 - TSS region transcription start site region 82582
Gm26301 8 102732390 to 102732484 94 - miRNA gene predicted gene, 26301
Tssr82583 8 102739220 to 102739251 31 - TSS region transcription start site region 82583
Tssr82584 8 102739263 to 102739275 12 - TSS region transcription start site region 82584
Tssr82585 8 102739283 to 102739297 14 - TSS region transcription start site region 82585
Gm45258 8 102780190 to 102781042 852 - unclassified gene predicted gene 45258
Cpgi20890 8 102783766 to 102785587 1821 CpG island CpG island 20890
Tssr82586 8 102785069 to 102785089 20 - TSS region transcription start site region 82586
Tssr82587 8 102785093 to 102785114 21 - TSS region transcription start site region 82587
Tssr82588 8 102785344 to 102785395 51 - TSS region transcription start site region 82588
Tssr82589 8 102785765 to 102785776 11 - TSS region transcription start site region 82589
Cpgi20891 8 102786558 to 102786940 382 CpG island CpG island 20891
Tssr82590 8 102786631 to 102786651 20 - TSS region transcription start site region 82590
Gm8730 8 102864845 to 102865798 953 - pseudogene predicted pseudogene 8730
Tssr82591 8 102865868 to 102865876 8 - TSS region transcription start site region 82591
Gm45391 8 103130248 to 103144946 14698 - lincRNA gene predicted gene 45391
Tssr79019 8 103235875 to 103235901 26 + TSS region transcription start site region 79019
Gm32531 8 103271152 to 103276608 5456 + lincRNA gene predicted gene, 32531
Gm39234 8 103296749 to 103316593 19844 + lncRNA gene predicted gene, 39234
1600027J07Rik 8 103343878 to 103347534 3656 - lincRNA gene RIKEN cDNA 1600027J07 gene
D8Dcr38 8 103347441 to 103347542 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 38
Tssr82592 8 103347531 to 103347546 15 - TSS region transcription start site region 82592
Gm32589 8 103488996 to 103492625 3629 + lncRNA gene predicted gene, 32589
Gm45277 8 103531645 to 103563623 31978 - lincRNA gene predicted gene 45277
Gm32642 8 103568056 to 103571656 3600 - lncRNA gene predicted gene, 32642
Tssr2670 8 103590941 to 103590943 2 - TSS region transcription start site region 2670
Tssr79020 8 103603772 to 103603786 14 + TSS region transcription start site region 79020
Tssr79021 8 103603789 to 103603810 21 + TSS region transcription start site region 79021
4933400L20Rik 8 103603799 to 103680382 76583 + lincRNA gene RIKEN cDNA 4933400L20 gene
Gm39235 8 103722702 to 103728600 5898 + lncRNA gene predicted gene, 39235
Tssr2671 8 103802114 to 103802137 23 - TSS region transcription start site region 2671
D8Mit110 8 103861031 to 103861178 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 110
D8Mit137 8 103883870 to 103883998 128 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 137
D8Mit111 8 104008477 to 104008596 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 111
Gm32728 8 104011068 to 104036762 25694 - lncRNA gene predicted gene, 32728
Cpgi20892 8 104028695 to 104029013 318 CpG island CpG island 20892
Tssr82593 8 104034320 to 104034321 1 - TSS region transcription start site region 82593
Gm39236 8 104059324 to 104066136 6812 + lncRNA gene predicted gene, 39236
Gm8748 8 104071149 to 104071732 583 + pseudogene predicted gene 8748
Gm29682 8 104088916 to 104105873 16957 - antisense lncRNA gene predicted gene, 29682
Cpgi20893 8 104099649 to 104100315 666 CpG island CpG island 20893
Tssr2672 8 104101598 to 104101613 15 + TSS region transcription start site region 2672
Cdh5 8 104101625 to 104144511 42886 + protein coding gene cadherin 5
Tssr79022 8 104101628 to 104101650 22 + TSS region transcription start site region 79022
Tssr79023 8 104101654 to 104101708 54 + TSS region transcription start site region 79023
Tssr79024 8 104111388 to 104111401 13 + TSS region transcription start site region 79024
Tssr79025 8 104111412 to 104111432 20 + TSS region transcription start site region 79025
Tssr79026 8 104111439 to 104111457 18 + TSS region transcription start site region 79026
Tssr79027 8 104112968 to 104112980 12 + TSS region transcription start site region 79027
D8Mit212 8 104120445 to 104120591 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 212
Tssr79028 8 104131110 to 104131126 16 + TSS region transcription start site region 79028
Tssr79029 8 104133820 to 104133826 6 + TSS region transcription start site region 79029
Cpgi20894 8 104142451 to 104142995 544 CpG island CpG island 20894
Tssr79030 8 104142747 to 104142760 13 + TSS region transcription start site region 79030
Tssr79031 8 104142842 to 104142862 20 + TSS region transcription start site region 79031
Tssr79032 8 104142977 to 104142989 12 + TSS region transcription start site region 79032
Tssr79033 8 104143235 to 104143249 14 + TSS region transcription start site region 79033
Tssr79034 8 104144248 to 104144269 21 + TSS region transcription start site region 79034
Gm45663 8 104152706 to 104154337 1631 + unclassified gene predicted gene 45663
D8Mit352 8 104155198 to 104155317 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 352
Cpgi20895 8 104170020 to 104171772 1752 CpG island CpG island 20895
Bean1 8 104170442 to 104219122 48680 + protein coding gene brain expressed, associated with Nedd4, 1
Tssr79035 8 104170538 to 104170612 74 + TSS region transcription start site region 79035
Gm10631 8 104177795 to 104184599 6804 - antisense lncRNA gene predicted gene 10631
Gm45892 8 104217202 to 104218299 1097 - antisense lncRNA gene predicted gene 45892
Gm45887 8 104220612 to 104223609 2997 + unclassified gene predicted gene 45887
Gm45750 8 104223747 to 104224100 353 + pseudogene predicted gene 45750
Tk2 8 104226685 to 104248558 21873 - protein coding gene thymidine kinase 2, mitochondrial
Tssr82594 8 104239623 to 104239628 5 - TSS region transcription start site region 82594
Tssr79036 8 104239744 to 104239779 35 + TSS region transcription start site region 79036
Tssr82595 8 104247570 to 104247574 4 - TSS region transcription start site region 82595
Cpgi20896 8 104248254 to 104248619 365 CpG island CpG island 20896
Tssr82596 8 104248499 to 104248569 70 - TSS region transcription start site region 82596
Cpgi20897 8 104250771 to 104251216 445 CpG island CpG island 20897
Cklf 8 104250861 to 104264936 14075 + protein coding gene chemokine-like factor
Tssr79037 8 104250869 to 104250912 43 + TSS region transcription start site region 79037
Tssr79038 8 104250925 to 104250940 15 + TSS region transcription start site region 79038
Tssr79039 8 104250943 to 104250954 11 + TSS region transcription start site region 79039
Tssr79040 8 104250960 to 104250971 11 + TSS region transcription start site region 79040
Tssr2673 8 104250989 to 104250998 9 + TSS region transcription start site region 2673
Tssr79041 8 104264468 to 104264476 8 + TSS region transcription start site region 79041
Tssr79042 8 104264482 to 104264508 26 + TSS region transcription start site region 79042
Cmtm2a 8 104281042 to 104293181 12139 - protein coding gene CKLF-like MARVEL transmembrane domain containing 2A
Gm45711 8 104281347 to 104310081 28734 - protein coding gene predicted gene 45711
Tssr82597 8 104293193 to 104293204 11 - TSS region transcription start site region 82597
Cmtm1 8 104293542 to 104310145 16603 - protein coding gene CKLF-like MARVEL transmembrane domain containing 1
Tssr79043 8 104295730 to 104295733 3 + TSS region transcription start site region 79043
Cpgi20898 8 104309353 to 104309704 351 CpG island CpG island 20898
Tssr82598 8 104310052 to 104310102 50 - TSS region transcription start site region 82598
Tssr82599 8 104310109 to 104310110 1 - TSS region transcription start site region 82599
Gm45710 8 104310832 to 104312769 1937 - pseudogene predicted gene 45710
Gm11020 8 104321567 to 104321787 220 + unclassified gene predicted gene 11020
Tssr79044 8 104322204 to 104322237 33 + TSS region transcription start site region 79044
Cmtm2b 8 104322230 to 104330764 8534 + protein coding gene CKLF-like MARVEL transmembrane domain containing 2B
Tssr2674 8 104322257 to 104322268 11 + TSS region transcription start site region 2674
Tssr79045 8 104322324 to 104322367 43 + TSS region transcription start site region 79045
Tssr79046 8 104322378 to 104322389 11 + TSS region transcription start site region 79046
Gm45878 8 104324440 to 104324680 240 - pseudogene predicted gene 45878
Tssr79047 8 104339347 to 104339396 49 + TSS region transcription start site region 79047
Cmtm3 8 104339410 to 104347672 8262 + protein coding gene CKLF-like MARVEL transmembrane domain containing 3
Cpgi20899 8 104340258 to 104341401 1143 CpG island CpG island 20899
Tssr79048 8 104340292 to 104340341 49 + TSS region transcription start site region 79048
Tssr79049 8 104340348 to 104340379 31 + TSS region transcription start site region 79049
Tssr79050 8 104340385 to 104340403 18 + TSS region transcription start site region 79050
Tssr82600 8 104340389 to 104340438 49 - TSS region transcription start site region 82600
Tssr79051 8 104340617 to 104340622 5 + TSS region transcription start site region 79051
Tssr79052 8 104340647 to 104340658 11 + TSS region transcription start site region 79052
Tssr79053 8 104340664 to 104340704 40 + TSS region transcription start site region 79053
Tssr79054 8 104340709 to 104340723 14 + TSS region transcription start site region 79054
Tssr79055 8 104340729 to 104340751 22 + TSS region transcription start site region 79055
Tssr79056 8 104340760 to 104340771 11 + TSS region transcription start site region 79056
Tssr79057 8 104340773 to 104340789 16 + TSS region transcription start site region 79057
Tssr79058 8 104345273 to 104345293 20 + TSS region transcription start site region 79058
Tssr79059 8 104346953 to 104346995 42 + TSS region transcription start site region 79059
Tssr79060 8 104347459 to 104347472 13 + TSS region transcription start site region 79060
Cmtm4 8 104348191 to 104395807 47616 - protein coding gene CKLF-like MARVEL transmembrane domain containing 4