Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:95215814-96527595

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cngb1 8 95239045 to 95306585 67540 - protein coding gene cyclic nucleotide gated channel beta 1
Cpgi20868 8 95242339 to 95242503 164 CpG island CpG island 20868
Tssr2662 8 95294074 to 95294101 27 - TSS region transcription start site region 2662
Tssr2663 8 95306556 to 95306576 20 - TSS region transcription start site region 2663
Tssr2664 8 95306587 to 95306598 11 - TSS region transcription start site region 2664
Gm5359 8 95307101 to 95307800 699 - pseudogene predicted gene 5359
Tepp 8 95311569 to 95326211 14642 + protein coding gene testis, prostate and placenta expressed
Tssr2665 8 95311582 to 95311587 5 + TSS region transcription start site region 2665
Tssr2666 8 95311596 to 95311627 31 + TSS region transcription start site region 2666
Tssr2667 8 95311636 to 95311647 11 + TSS region transcription start site region 2667
Cpgi20869 8 95319975 to 95320874 899 CpG island CpG island 20869
Tssr78978 8 95320440 to 95320466 26 + TSS region transcription start site region 78978
Zfp319 8 95326136 to 95331950 5814 - protein coding gene zinc finger protein 319
Cpgi20870 8 95328054 to 95328823 769 CpG island CpG island 20870
Cpgi20871 8 95330992 to 95332652 1660 CpG island CpG island 20871
Tssr82538 8 95331756 to 95331836 80 - TSS region transcription start site region 82538
Tssr82539 8 95332142 to 95332159 17 - TSS region transcription start site region 82539
Tssr82540 8 95332180 to 95332250 70 - TSS region transcription start site region 82540
Tssr78979 8 95332279 to 95332342 63 + TSS region transcription start site region 78979
Usb1 8 95332284 to 95347507 15223 + protein coding gene U6 snRNA biogenesis 1
Tssr78980 8 95335310 to 95335323 13 + TSS region transcription start site region 78980
Tssr78981 8 95346877 to 95346915 38 + TSS region transcription start site region 78981
Cpgi20872 8 95351607 to 95353775 2168 CpG island CpG island 20872
Tssr78982 8 95352236 to 95352251 15 + TSS region transcription start site region 78982
Tssr78983 8 95352258 to 95352329 71 + TSS region transcription start site region 78983
Mmp15 8 95352296 to 95374293 21997 + protein coding gene matrix metallopeptidase 15
Tssr78984 8 95369620 to 95369632 12 + TSS region transcription start site region 78984
Tssr78985 8 95370116 to 95370128 12 + TSS region transcription start site region 78985
Tssr78986 8 95411973 to 95411998 25 + TSS region transcription start site region 78986
Cfap20 8 95420249 to 95434869 14620 - protein coding gene cilia and flagella associated protein 20
Tssr82541 8 95423321 to 95423325 4 - TSS region transcription start site region 82541
Cpgi20873 8 95434043 to 95435171 1128 CpG island CpG island 20873
Tssr82542 8 95434629 to 95434640 11 - TSS region transcription start site region 82542
Tssr82543 8 95434643 to 95434654 11 - TSS region transcription start site region 82543
Tssr82544 8 95434668 to 95434679 11 - TSS region transcription start site region 82544
Tssr82545 8 95434762 to 95434780 18 - TSS region transcription start site region 82545
Tssr82546 8 95434786 to 95434830 44 - TSS region transcription start site region 82546
Tssr2668 8 95434838 to 95434853 15 - TSS region transcription start site region 2668
Tssr82547 8 95434884 to 95434901 17 - TSS region transcription start site region 82547
Csnk2a2 8 95446096 to 95489069 42973 - protein coding gene casein kinase 2, alpha prime polypeptide
Tssr82548 8 95452760 to 95452764 4 - TSS region transcription start site region 82548
Gm45854 8 95468646 to 95472133 3487 + unclassified gene predicted gene 45854
Gm45853 8 95480453 to 95483623 3170 - unclassified gene predicted gene 45853
Cpgi20874 8 95487807 to 95489307 1500 CpG island CpG island 20874
Tssr82549 8 95488700 to 95488707 7 - TSS region transcription start site region 82549
Tssr82550 8 95488774 to 95488852 78 - TSS region transcription start site region 82550
Tssr82551 8 95490021 to 95490058 37 - TSS region transcription start site region 82551
Tssr78987 8 95496446 to 95496469 23 + TSS region transcription start site region 78987
4933406B17Rik 8 95496482 to 95503409 6927 + lincRNA gene RIKEN cDNA 4933406B17 gene
D8Mit312 8 95518613 to 95518703 90 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 312
Cbm2 8 95518613 to 95518703 90 QTL cerebellum weight 2
Cpgi20875 8 95533899 to 95534372 473 CpG island CpG island 20875
Tssr78988 8 95534078 to 95534123 45 + TSS region transcription start site region 78988
Ccdc113 8 95534085 to 95558890 24805 + protein coding gene coiled-coil domain containing 113
Tssr78989 8 95534131 to 95534132 1 + TSS region transcription start site region 78989
Tssr78990 8 95534133 to 95534143 10 + TSS region transcription start site region 78990
Cpgi20876 8 95538091 to 95538364 273 CpG island CpG island 20876
Tssr78991 8 95551789 to 95551792 3 + TSS region transcription start site region 78991
1700112L15Rik 8 95551793 to 95552302 509 + unclassified gene RIKEN cDNA 1700112L15 gene
Prss54 8 95559066 to 95576330 17264 - protein coding gene protease, serine 54
Tssr82552 8 95576245 to 95576256 11 - TSS region transcription start site region 82552
Tssr82553 8 95576262 to 95576286 24 - TSS region transcription start site region 82553
Tssr82554 8 95576289 to 95576333 44 - TSS region transcription start site region 82554
Tssr82555 8 95576334 to 95576340 6 - TSS region transcription start site region 82555
Gm5912 8 95577471 to 95578908 1437 + pseudogene predicted gene 5912
Gm31518 8 95593428 to 95613875 20447 + lincRNA gene predicted gene, 31518
Cpgi20877 8 95601496 to 95601659 163 CpG island CpG island 20877
Tssr78992 8 95601509 to 95601533 24 + TSS region transcription start site region 78992
Gm45702 8 95629173 to 95630391 1218 - lincRNA gene predicted gene 45702
Cpgi20878 8 95633288 to 95633954 666 CpG island CpG island 20878
Tssr78993 8 95633500 to 95633586 86 + TSS region transcription start site region 78993
Gins3 8 95633559 to 95645059 11500 + protein coding gene GINS complex subunit 3 (Psf3 homolog)
Gm39230 8 95653041 to 95657255 4214 + lncRNA gene predicted gene, 39230
Gm42037 8 95659425 to 95662571 3146 - lncRNA gene predicted gene, 42037
Gm6013 8 95674696 to 95675394 698 - pseudogene predicted gene 6013
Ndrg4 8 95676985 to 95715119 38134 + protein coding gene N-myc downstream regulated gene 4
Cpgi20879 8 95677223 to 95679065 1842 CpG island CpG island 20879
Tssr78994 8 95677745 to 95677808 63 + TSS region transcription start site region 78994
Tssr78995 8 95678206 to 95678216 10 + TSS region transcription start site region 78995
Tssr78996 8 95678217 to 95678228 11 + TSS region transcription start site region 78996
Tssr78997 8 95678230 to 95678259 29 + TSS region transcription start site region 78997
Tssr78998 8 95678264 to 95678288 24 + TSS region transcription start site region 78998
Tssr78999 8 95678289 to 95678296 7 + TSS region transcription start site region 78999
Tssr79000 8 95678319 to 95678330 11 + TSS region transcription start site region 79000
Cpgi20880 8 95702617 to 95703370 753 CpG island CpG island 20880
Tssr79001 8 95703047 to 95703063 16 + TSS region transcription start site region 79001
Tssr79002 8 95713347 to 95713364 17 + TSS region transcription start site region 79002
Tssr79003 8 95713521 to 95713536 15 + TSS region transcription start site region 79003
Tssr2669 8 95713943 to 95713958 15 + TSS region transcription start site region 2669
Tssr79004 8 95714607 to 95714622 15 + TSS region transcription start site region 79004
Cpgi20881 8 95715662 to 95716793 1131 CpG island CpG island 20881
Setd6 8 95715881 to 95719010 3129 + protein coding gene SET domain containing 6
Tssr79005 8 95715901 to 95715932 31 + TSS region transcription start site region 79005
Cnot1 8 95719451 to 95807464 88013 - protein coding gene CCR4-NOT transcription complex, subunit 1
Gm46062 8 95721645 to 95723031 1386 + pseudogene predicted gene, 46062
Tssr82556 8 95735147 to 95735148 1 - TSS region transcription start site region 82556
Tssr82557 8 95740726 to 95740730 4 - TSS region transcription start site region 82557
Tssr82558 8 95744626 to 95744639 13 - TSS region transcription start site region 82558
Gm26493 8 95746060 to 95746195 135 - snoRNA gene predicted gene, 26493
Mir7073 8 95753151 to 95753214 63 - miRNA gene microRNA 7073
Gm26265 8 95756950 to 95757082 132 - snoRNA gene predicted gene, 26265
Gm45762 8 95775912 to 95778530 2618 - unclassified gene predicted gene 45762
Tssr82559 8 95788736 to 95788767 31 - TSS region transcription start site region 82559
Cpgi20882 8 95806500 to 95808204 1704 CpG island CpG island 20882
4930513N10Rik 8 95806830 to 95821728 14898 + antisense lncRNA gene RIKEN cDNA 4930513N10 gene
Tssr79006 8 95806969 to 95806986 17 + TSS region transcription start site region 79006
Tssr79007 8 95806991 to 95807018 27 + TSS region transcription start site region 79007
Tssr82560 8 95807390 to 95807399 9 - TSS region transcription start site region 82560
Tssr82561 8 95807416 to 95807453 37 - TSS region transcription start site region 82561
Tssr82562 8 95807458 to 95807471 13 - TSS region transcription start site region 82562
Tssr82563 8 95808061 to 95808076 15 - TSS region transcription start site region 82563
Gm31659 8 95808552 to 95818274 9722 - lincRNA gene predicted gene, 31659
Tssr82564 8 95817680 to 95817703 23 - TSS region transcription start site region 82564
Tssr82565 8 95818264 to 95818281 17 - TSS region transcription start site region 82565
Cpgi20883 8 95825330 to 95825506 176 CpG island CpG island 20883
Sap18b 8 95825346 to 95826134 788 + protein coding gene Sin3-associated polypeptide 18B
Tssr79008 8 95825353 to 95825354 1 + TSS region transcription start site region 79008
Gm31805 8 95828598 to 95833675 5077 - lincRNA gene predicted gene, 31805
Slc38a7 8 95835920 to 95853539 17619 - protein coding gene solute carrier family 38, member 7
Cpgi20884 8 95848258 to 95848641 383 CpG island CpG island 20884
Cpgi20885 8 95853259 to 95853520 261 CpG island CpG island 20885
Tssr82566 8 95853501 to 95853530 29 - TSS region transcription start site region 82566
Got2 8 95864137 to 95888365 24228 - protein coding gene glutamatic-oxaloacetic transaminase 2, mitochondrial
Tssr82567 8 95864757 to 95864796 39 - TSS region transcription start site region 82567
Gm45760 8 95870814 to 95872595 1781 + unclassified gene predicted gene 45760
Cpgi20886 8 95887557 to 95888670 1113 CpG island CpG island 20886
Tssr82568 8 95888364 to 95888375 11 - TSS region transcription start site region 82568
Tssr82569 8 95888377 to 95888415 38 - TSS region transcription start site region 82569
Tssr82570 8 95888510 to 95888520 10 - TSS region transcription start site region 82570
Gm45895 8 95910574 to 95934042 23468 + lincRNA gene predicted gene 45895
Gm8637 8 95921529 to 95922613 1084 + pseudogene predicted gene 8637
Cpgi20887 8 95951953 to 95952155 202 CpG island CpG island 20887
D8Dcr28 8 95967333 to 95967448 115 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 28
Gm31892 8 96007041 to 96010702 3661 + lncRNA gene predicted gene, 31892
D8Mit33 8 96082178 to 96082403 225 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 33
Char2 8 96082178 to 96082403 225 QTL P. chabaudi malaria resistance QTL 2
Tssr79009 8 96105101 to 96105106 5 + TSS region transcription start site region 79009
Cpgi20888 8 96151093 to 96151262 169 CpG island CpG island 20888
D8Mit11 8 96295315 to 96295531 216 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 11
Gm32005 8 96309519 to 96361523 52004 + lincRNA gene predicted gene, 32005
Gm22780 8 96318487 to 96318618 131 - snoRNA gene predicted gene, 22780
Gm32122 8 96371727 to 96403862 32135 - lincRNA gene predicted gene, 32122
Tssr82571 8 96403858 to 96403872 14 - TSS region transcription start site region 82571
Tssr82572 8 96403880 to 96403892 12 - TSS region transcription start site region 82572
Tssr82573 8 96403900 to 96403905 5 - TSS region transcription start site region 82573
Tssr79010 8 96452966 to 96452972 6 + TSS region transcription start site region 79010
1700047G07Rik 8 96512340 to 96513979 1639 + lincRNA gene RIKEN cDNA 1700047G07 gene
Obsty2 8 129018580 to 95518613 -33499967 QTL obesity 2