Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:94781060-96711195

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280 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cx3cl1 8 94772180 to 94782427 10247 + protein coding gene chemokine (C-X3-C motif) ligand 1
Tssr78919 8 94781170 to 94781177 7 + TSS region transcription start site region 78919
1700121C10Rik 8 94794168 to 94802435 8267 unclassified gene RIKEN cDNA 1700121C10 gene
Tssr82512 8 94802463 to 94802464 1 - TSS region transcription start site region 82512
Tssr2655 8 94802470 to 94802473 3 - TSS region transcription start site region 2655
Tssr78920 8 94810446 to 94810461 15 + TSS region transcription start site region 78920
Ccl17 8 94810453 to 94812036 1583 + protein coding gene chemokine (C-C motif) ligand 17
Ciapin1 8 94819818 to 94838372 18554 - protein coding gene cytokine induced apoptosis inhibitor 1
Gm7418 8 94835717 to 94836517 800 + pseudogene predicted pseudogene 7418
Cpgi20855 8 94837636 to 94839012 1376 CpG island CpG island 20855
Tssr82513 8 94838207 to 94838246 39 - TSS region transcription start site region 82513
Tssr82514 8 94838255 to 94838336 81 - TSS region transcription start site region 82514
Tssr78921 8 94838388 to 94838425 37 + TSS region transcription start site region 78921
Coq9 8 94838417 to 94854895 16478 + protein coding gene coenzyme Q9
Tssr82515 8 94838810 to 94838845 35 - TSS region transcription start site region 82515
Tssr82516 8 94838854 to 94838864 10 - TSS region transcription start site region 82516
Cpgi20856 8 94857318 to 94858139 821 CpG island CpG island 20856
Polr2c 8 94857450 to 94864242 6792 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide C
Tssr78922 8 94857474 to 94857494 20 + TSS region transcription start site region 78922
Tssr2656 8 94857528 to 94857558 30 + TSS region transcription start site region 2656
Dok4 8 94863828 to 94876312 12484 - protein coding gene docking protein 4
Cpgi20857 8 94875595 to 94876720 1125 CpG island CpG island 20857
Tssr82517 8 94876250 to 94876263 13 - TSS region transcription start site region 82517
Tssr82518 8 94876269 to 94876321 52 - TSS region transcription start site region 82518
Tssr82519 8 94876324 to 94876335 11 - TSS region transcription start site region 82519
D8Mit109 8 94879159 to 94879291 132 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 109
Cpgi20858 8 94889165 to 94889373 208 CpG island CpG island 20858
D8Mit32 8 94894018 to 94894184 166 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 32
Ccdc102a 8 94902869 to 94918098 15229 - protein coding gene coiled-coil domain containing 102A
Cpgi20859 8 94912905 to 94914043 1138 CpG island CpG island 20859
Cpgi20860 8 94917405 to 94918387 982 CpG island CpG island 20860
Tssr82520 8 94918012 to 94918084 72 - TSS region transcription start site region 82520
Tssr78923 8 94923550 to 94923582 32 + TSS region transcription start site region 78923
Tssr78924 8 94923674 to 94923683 9 + TSS region transcription start site region 78924
Tssr78925 8 94923687 to 94923708 21 + TSS region transcription start site region 78925
Adgrg5 8 94923694 to 94943280 19586 + protein coding gene adhesion G protein-coupled receptor G5
Gm30968 8 94964677 to 94977041 12364 - lncRNA gene predicted gene, 30968
Gm10286 8 94964679 to 94969756 5077 - pseudogene predicted gene 10286
Tssr82521 8 94973327 to 94973330 3 - TSS region transcription start site region 82521
Tssr78926 8 94973567 to 94973569 2 + TSS region transcription start site region 78926
Tssr78927 8 94974686 to 94974700 14 + TSS region transcription start site region 78927
Tssr78928 8 94974704 to 94974721 17 + TSS region transcription start site region 78928
Adgrg1 8 94974756 to 95014208 39452 + protein coding gene adhesion G protein-coupled receptor G1
Tssr78929 8 94976879 to 94976893 14 + TSS region transcription start site region 78929
Tssr2657 8 94976981 to 94976986 5 - TSS region transcription start site region 2657
Tssr78930 8 94977101 to 94977123 22 + TSS region transcription start site region 78930
Cpgi20861 8 94977258 to 94977729 471 CpG island CpG island 20861
Tssr78931 8 94977277 to 94977288 11 + TSS region transcription start site region 78931
Tssr78932 8 94977296 to 94977309 13 + TSS region transcription start site region 78932
Tssr78933 8 94977330 to 94977337 7 + TSS region transcription start site region 78933
Tssr78934 8 94977352 to 94977368 16 + TSS region transcription start site region 78934
Tssr78935 8 94977378 to 94977392 14 + TSS region transcription start site region 78935
Tssr2658 8 94978897 to 94978906 9 + TSS region transcription start site region 2658
Tssr78936 8 94982173 to 94982177 4 + TSS region transcription start site region 78936
Tssr2659 8 94984029 to 94984041 12 + TSS region transcription start site region 2659
Tssr78937 8 94984349 to 94984361 12 + TSS region transcription start site region 78937
Tssr78938 8 94984409 to 94984477 68 + TSS region transcription start site region 78938
Tssr78939 8 94985440 to 94985451 11 + TSS region transcription start site region 78939
Tssr78940 8 94985523 to 94985568 45 + TSS region transcription start site region 78940
Tssr2660 8 94985606 to 94985609 3 + TSS region transcription start site region 2660
Tssr78941 8 94992683 to 94992702 19 + TSS region transcription start site region 78941
Tssr78942 8 94992853 to 94992874 21 + TSS region transcription start site region 78942
Tssr78943 8 94992920 to 94992937 17 + TSS region transcription start site region 78943
Tssr78944 8 94994238 to 94994327 89 + TSS region transcription start site region 78944
Tssr78945 8 94994365 to 94994390 25 + TSS region transcription start site region 78945
Tssr78946 8 94994393 to 94994433 40 + TSS region transcription start site region 78946
Tssr78947 8 94994693 to 94994721 28 + TSS region transcription start site region 78947
Tssr78948 8 94994745 to 94994789 44 + TSS region transcription start site region 78948
Tssr78949 8 94994793 to 94994803 10 + TSS region transcription start site region 78949
Tssr78950 8 94994840 to 94994852 12 + TSS region transcription start site region 78950
Tssr78951 8 94995591 to 94995621 30 + TSS region transcription start site region 78951
Tssr78952 8 94995683 to 94995694 11 + TSS region transcription start site region 78952
Tssr78953 8 94995704 to 94995748 44 + TSS region transcription start site region 78953
Tssr78954 8 94995750 to 94995761 11 + TSS region transcription start site region 78954
Tssr78955 8 95002409 to 95002451 42 + TSS region transcription start site region 78955
Tssr78956 8 95003368 to 95003427 59 + TSS region transcription start site region 78956
Tssr78957 8 95013286 to 95013313 27 + TSS region transcription start site region 78957
Adgrg3 8 95017692 to 95045250 27558 + protein coding gene adhesion G protein-coupled receptor G3
Tssr78958 8 95017707 to 95017726 19 + TSS region transcription start site region 78958
Tssr78959 8 95017734 to 95017755 21 + TSS region transcription start site region 78959
Tssr82522 8 95020225 to 95020228 3 - TSS region transcription start site region 82522
Tssr78960 8 95020441 to 95020452 11 + TSS region transcription start site region 78960
Tssr82523 8 95020670 to 95020683 13 - TSS region transcription start site region 82523
Tssr78961 8 95020706 to 95020719 13 + TSS region transcription start site region 78961
Tssr78962 8 95020751 to 95020762 11 + TSS region transcription start site region 78962
Tssr78963 8 95020789 to 95020819 30 + TSS region transcription start site region 78963
Tssr78964 8 95020824 to 95020845 21 + TSS region transcription start site region 78964
Tssr78965 8 95020874 to 95020891 17 + TSS region transcription start site region 78965
Tssr78966 8 95020903 to 95020943 40 + TSS region transcription start site region 78966
Tssr82524 8 95020990 to 95021000 10 - TSS region transcription start site region 82524
Tssr82525 8 95021007 to 95021016 9 - TSS region transcription start site region 82525
Tssr82526 8 95024498 to 95024522 24 - TSS region transcription start site region 82526
Tssr82527 8 95037120 to 95037131 11 - TSS region transcription start site region 82527
Gm45757 8 95045981 to 95047460 1479 + unclassified gene predicted gene 45757
Tssr78967 8 95049997 to 95050001 4 + TSS region transcription start site region 78967
Tssr78968 8 95055094 to 95055126 32 + TSS region transcription start site region 78968
Drc7 8 95055103 to 95078141 23038 + protein coding gene dynein regulatory complex subunit 7
Tssr78969 8 95056655 to 95056666 11 + TSS region transcription start site region 78969
Tssr78970 8 95056669 to 95056678 9 + TSS region transcription start site region 78970
Tssr78971 8 95056683 to 95056696 13 + TSS region transcription start site region 78971
Tssr78972 8 95056703 to 95056712 9 + TSS region transcription start site region 78972
Tssr82528 8 95056907 to 95056949 42 - TSS region transcription start site region 82528
Tssr78973 8 95058386 to 95058392 6 + TSS region transcription start site region 78973
Tssr78974 8 95059021 to 95059065 44 + TSS region transcription start site region 78974
Tssr2661 8 95062518 to 95062519 1 + TSS region transcription start site region 2661
Cpgi20862 8 95074106 to 95074379 273 CpG island CpG island 20862
Cpgi20863 8 95076211 to 95076421 210 CpG island CpG island 20863
Cpgi20864 8 95080401 to 95081891 1490 CpG island CpG island 20864
Katnb1 8 95081175 to 95099874 18699 + protein coding gene katanin p80 (WD40-containing) subunit B 1
Tssr78975 8 95081187 to 95081205 18 + TSS region transcription start site region 78975
Tssr78976 8 95081206 to 95081286 80 + TSS region transcription start site region 78976
Gm45758 8 95089671 to 95090676 1005 - unclassified gene predicted gene 45758
Kifc3 8 95099828 to 95202812 102984 - protein coding gene kinesin family member C3
Tssr82529 8 95113334 to 95113347 13 - TSS region transcription start site region 82529
Tssr78977 8 95113433 to 95113458 25 + TSS region transcription start site region 78977
Gm31224 8 95113754 to 95129609 15855 + antisense lncRNA gene predicted gene, 31224
Gm45812 8 95126666 to 95134867 8201 + antisense lncRNA gene predicted gene 45812
Cpgi20865 8 95137538 to 95137996 458 CpG island CpG island 20865
Gm31036 8 95138310 to 95148386 10076 + antisense lncRNA gene predicted gene, 31036
D8Mit349 8 95141265 to 95141386 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 349
Cpgi20866 8 95141993 to 95143057 1064 CpG island CpG island 20866
Tssr82530 8 95142477 to 95142577 100 - TSS region transcription start site region 82530
Tssr82531 8 95143190 to 95143213 23 - TSS region transcription start site region 82531
Tssr82532 8 95143246 to 95143257 11 - TSS region transcription start site region 82532
Cpgi20867 8 95149554 to 95149719 165 CpG island CpG island 20867
Tssr82533 8 95198703 to 95198707 4 - TSS region transcription start site region 82533
Gm31277 8 95201090 to 95205011 3921 + lncRNA gene predicted gene, 31277
Tssr82534 8 95202775 to 95202785 10 - TSS region transcription start site region 82534
Tssr82535 8 95202792 to 95202832 40 - TSS region transcription start site region 82535
Tssr82536 8 95202835 to 95202844 9 - TSS region transcription start site region 82536
Tssr82537 8 95203028 to 95203056 28 - TSS region transcription start site region 82537
Cngb1 8 95239045 to 95306585 67540 - protein coding gene cyclic nucleotide gated channel beta 1
Cpgi20868 8 95242339 to 95242503 164 CpG island CpG island 20868
Tssr2662 8 95294074 to 95294101 27 - TSS region transcription start site region 2662
Tssr2663 8 95306556 to 95306576 20 - TSS region transcription start site region 2663
Tssr2664 8 95306587 to 95306598 11 - TSS region transcription start site region 2664
Gm5359 8 95307101 to 95307800 699 - pseudogene predicted gene 5359
Tepp 8 95311569 to 95326211 14642 + protein coding gene testis, prostate and placenta expressed
Tssr2665 8 95311582 to 95311587 5 + TSS region transcription start site region 2665
Tssr2666 8 95311596 to 95311627 31 + TSS region transcription start site region 2666
Tssr2667 8 95311636 to 95311647 11 + TSS region transcription start site region 2667
Cpgi20869 8 95319975 to 95320874 899 CpG island CpG island 20869
Tssr78978 8 95320440 to 95320466 26 + TSS region transcription start site region 78978
Zfp319 8 95326136 to 95331950 5814 - protein coding gene zinc finger protein 319
Cpgi20870 8 95328054 to 95328823 769 CpG island CpG island 20870
Cpgi20871 8 95330992 to 95332652 1660 CpG island CpG island 20871
Tssr82538 8 95331756 to 95331836 80 - TSS region transcription start site region 82538
Tssr82539 8 95332142 to 95332159 17 - TSS region transcription start site region 82539
Tssr82540 8 95332180 to 95332250 70 - TSS region transcription start site region 82540
Tssr78979 8 95332279 to 95332342 63 + TSS region transcription start site region 78979
Usb1 8 95332284 to 95347507 15223 + protein coding gene U6 snRNA biogenesis 1
Tssr78980 8 95335310 to 95335323 13 + TSS region transcription start site region 78980
Tssr78981 8 95346877 to 95346915 38 + TSS region transcription start site region 78981
Cpgi20872 8 95351607 to 95353775 2168 CpG island CpG island 20872
Tssr78982 8 95352236 to 95352251 15 + TSS region transcription start site region 78982
Tssr78983 8 95352258 to 95352329 71 + TSS region transcription start site region 78983
Mmp15 8 95352296 to 95374293 21997 + protein coding gene matrix metallopeptidase 15
Tssr78984 8 95369620 to 95369632 12 + TSS region transcription start site region 78984
Tssr78985 8 95370116 to 95370128 12 + TSS region transcription start site region 78985
Tssr78986 8 95411973 to 95411998 25 + TSS region transcription start site region 78986
Cfap20 8 95420249 to 95434869 14620 - protein coding gene cilia and flagella associated protein 20
Tssr82541 8 95423321 to 95423325 4 - TSS region transcription start site region 82541
Cpgi20873 8 95434043 to 95435171 1128 CpG island CpG island 20873
Tssr82542 8 95434629 to 95434640 11 - TSS region transcription start site region 82542
Tssr82543 8 95434643 to 95434654 11 - TSS region transcription start site region 82543
Tssr82544 8 95434668 to 95434679 11 - TSS region transcription start site region 82544
Tssr82545 8 95434762 to 95434780 18 - TSS region transcription start site region 82545
Tssr82546 8 95434786 to 95434830 44 - TSS region transcription start site region 82546
Tssr2668 8 95434838 to 95434853 15 - TSS region transcription start site region 2668
Tssr82547 8 95434884 to 95434901 17 - TSS region transcription start site region 82547
Csnk2a2 8 95446096 to 95489069 42973 - protein coding gene casein kinase 2, alpha prime polypeptide
Tssr82548 8 95452760 to 95452764 4 - TSS region transcription start site region 82548
Gm45854 8 95468646 to 95472133 3487 + unclassified gene predicted gene 45854
Gm45853 8 95480453 to 95483623 3170 - unclassified gene predicted gene 45853
Cpgi20874 8 95487807 to 95489307 1500 CpG island CpG island 20874
Tssr82549 8 95488700 to 95488707 7 - TSS region transcription start site region 82549
Tssr82550 8 95488774 to 95488852 78 - TSS region transcription start site region 82550
Tssr82551 8 95490021 to 95490058 37 - TSS region transcription start site region 82551
Tssr78987 8 95496446 to 95496469 23 + TSS region transcription start site region 78987
4933406B17Rik 8 95496482 to 95503409 6927 + lincRNA gene RIKEN cDNA 4933406B17 gene
Cbm2 8 95518613 to 95518703 90 QTL cerebellum weight 2
D8Mit312 8 95518613 to 95518703 90 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 312
Cpgi20875 8 95533899 to 95534372 473 CpG island CpG island 20875
Tssr78988 8 95534078 to 95534123 45 + TSS region transcription start site region 78988
Ccdc113 8 95534085 to 95558890 24805 + protein coding gene coiled-coil domain containing 113
Tssr78989 8 95534131 to 95534132 1 + TSS region transcription start site region 78989
Tssr78990 8 95534133 to 95534143 10 + TSS region transcription start site region 78990
Cpgi20876 8 95538091 to 95538364 273 CpG island CpG island 20876
Tssr78991 8 95551789 to 95551792 3 + TSS region transcription start site region 78991
1700112L15Rik 8 95551793 to 95552302 509 + unclassified gene RIKEN cDNA 1700112L15 gene
Prss54 8 95559066 to 95576330 17264 - protein coding gene protease, serine 54
Tssr82552 8 95576245 to 95576256 11 - TSS region transcription start site region 82552
Tssr82553 8 95576262 to 95576286 24 - TSS region transcription start site region 82553
Tssr82554 8 95576289 to 95576333 44 - TSS region transcription start site region 82554
Tssr82555 8 95576334 to 95576340 6 - TSS region transcription start site region 82555
Gm5912 8 95577471 to 95578908 1437 + pseudogene predicted gene 5912
Gm31518 8 95593428 to 95613875 20447 + lincRNA gene predicted gene, 31518
Cpgi20877 8 95601496 to 95601659 163 CpG island CpG island 20877
Tssr78992 8 95601509 to 95601533 24 + TSS region transcription start site region 78992
Gm45702 8 95629173 to 95630391 1218 - lincRNA gene predicted gene 45702