Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:94616938-94876950

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carcdq1 8 39709256 to 94689598 54980342 QTL cardiac collagen deposition QTL 1
Rspry1 8 94601941 to 94660276 58335 + protein coding gene ring finger and SPRY domain containing 1
Gm18002 8 94640942 to 94641524 582 + pseudogene predicted gene, 18002
Cpgi20850 8 94666519 to 94667346 827 CpG island CpG island 20850
Arl2bp 8 94666600 to 94674425 7825 + protein coding gene ADP-ribosylation factor-like 2 binding protein
Tssr78899 8 94666614 to 94666650 36 + TSS region transcription start site region 78899
Tssr78900 8 94666652 to 94666676 24 + TSS region transcription start site region 78900
Tssr78901 8 94666700 to 94666711 11 + TSS region transcription start site region 78901
Tssr78902 8 94666722 to 94666769 47 + TSS region transcription start site region 78902
Tssr78903 8 94666776 to 94666787 11 + TSS region transcription start site region 78903
Tssr82506 8 94666949 to 94666987 38 - TSS region transcription start site region 82506
Tssr78904 8 94667082 to 94667128 46 + TSS region transcription start site region 78904
Tssr82507 8 94667128 to 94667137 9 - TSS region transcription start site region 82507
Tssr82508 8 94667203 to 94667216 13 - TSS region transcription start site region 82508
Pllp 8 94674895 to 94696242 21347 - protein coding gene plasma membrane proteolipid
Gm45767 8 94675606 to 94680166 4560 + antisense lncRNA gene predicted gene 45767
Tssr82509 8 94678725 to 94678739 14 - TSS region transcription start site region 82509
Cpgi20851 8 94695482 to 94696375 893 CpG island CpG island 20851
Tssr2653 8 94696178 to 94696200 22 - TSS region transcription start site region 2653
Tssr82510 8 94696223 to 94696287 64 - TSS region transcription start site region 82510
Gm22846 8 94698016 to 94698285 269 - unclassified non-coding RNA gene predicted gene, 22846
Cpgi20852 8 94703534 to 94703717 183 CpG island CpG island 20852
n-TLcag5 8 94703631 to 94703713 82 + tRNA gene nuclear encoded tRNA leucine 5 (anticodon CAG)
n-TLcag4 8 94704004 to 94704086 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon CAG)
Cpgi20853 8 94704230 to 94704760 530 CpG island CpG island 20853
Tssr82511 8 94711400 to 94711422 22 - TSS region transcription start site region 82511
D8Mit210 8 94743583 to 94743730 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 210
Tssr78905 8 94745677 to 94745693 16 + TSS region transcription start site region 78905
Ccl22 8 94745684 to 94751388 5704 + protein coding gene chemokine (C-C motif) ligand 22
Tssr78906 8 94746938 to 94746950 12 + TSS region transcription start site region 78906
Tssr78907 8 94749274 to 94749318 44 + TSS region transcription start site region 78907
Tssr78908 8 94749846 to 94749853 7 + TSS region transcription start site region 78908
Tssr78909 8 94749889 to 94749896 7 + TSS region transcription start site region 78909
Tssr2654 8 94749929 to 94749930 1 + TSS region transcription start site region 2654
Tssr78910 8 94750006 to 94750017 11 + TSS region transcription start site region 78910
Tssr78911 8 94750021 to 94750033 12 + TSS region transcription start site region 78911
Tssr78912 8 94750268 to 94750285 17 + TSS region transcription start site region 78912
Tssr78913 8 94750448 to 94750457 9 + TSS region transcription start site region 78913
Gnb1-ps3 8 94760288 to 94761237 949 + pseudogene guanine nucleotide binding protein (G protein), beta 1, pseudogene 3
Cpgi20854 8 94771865 to 94772404 539 CpG island CpG island 20854
Cx3cl1 8 94772180 to 94782427 10247 + protein coding gene chemokine (C-X3-C motif) ligand 1
Tssr78914 8 94772194 to 94772210 16 + TSS region transcription start site region 78914
Tssr78915 8 94779822 to 94779834 12 + TSS region transcription start site region 78915
Tssr78916 8 94780457 to 94780470 13 + TSS region transcription start site region 78916
Tssr78917 8 94780478 to 94780491 13 + TSS region transcription start site region 78917
Tssr78918 8 94780826 to 94780840 14 + TSS region transcription start site region 78918
Tssr78919 8 94781170 to 94781177 7 + TSS region transcription start site region 78919
1700121C10Rik 8 94794168 to 94802435 8267 unclassified gene RIKEN cDNA 1700121C10 gene
Tssr82512 8 94802463 to 94802464 1 - TSS region transcription start site region 82512
Tssr2655 8 94802470 to 94802473 3 - TSS region transcription start site region 2655
Tssr78920 8 94810446 to 94810461 15 + TSS region transcription start site region 78920
Ccl17 8 94810453 to 94812036 1583 + protein coding gene chemokine (C-C motif) ligand 17
Ciapin1 8 94819818 to 94838372 18554 - protein coding gene cytokine induced apoptosis inhibitor 1
Gm7418 8 94835717 to 94836517 800 + pseudogene predicted pseudogene 7418
Cpgi20855 8 94837636 to 94839012 1376 CpG island CpG island 20855
Tssr82513 8 94838207 to 94838246 39 - TSS region transcription start site region 82513
Tssr82514 8 94838255 to 94838336 81 - TSS region transcription start site region 82514
Tssr78921 8 94838388 to 94838425 37 + TSS region transcription start site region 78921
Coq9 8 94838417 to 94854895 16478 + protein coding gene coenzyme Q9
Tssr82515 8 94838810 to 94838845 35 - TSS region transcription start site region 82515
Tssr82516 8 94838854 to 94838864 10 - TSS region transcription start site region 82516
Cpgi20856 8 94857318 to 94858139 821 CpG island CpG island 20856
Polr2c 8 94857450 to 94864242 6792 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide C
Tssr78922 8 94857474 to 94857494 20 + TSS region transcription start site region 78922
Tssr2656 8 94857528 to 94857558 30 + TSS region transcription start site region 2656
Dok4 8 94863828 to 94876312 12484 - protein coding gene docking protein 4
Cpgi20857 8 94875595 to 94876720 1125 CpG island CpG island 20857
Tssr82517 8 94876250 to 94876263 13 - TSS region transcription start site region 82517
Tssr82518 8 94876269 to 94876321 52 - TSS region transcription start site region 82518
Tssr82519 8 94876324 to 94876335 11 - TSS region transcription start site region 82519