Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:94563854-95113864

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carcdq1 8 39709256 to 94689598 54980342 QTL cardiac collagen deposition QTL 1
Cpne2 8 94532990 to 94570531 37541 + protein coding gene copine II
Gm38555 8 94550579 to 94568584 18005 - lncRNA gene predicted gene, 38555
Tssr78890 8 94564700 to 94564718 18 + TSS region transcription start site region 78890
Tssr78891 8 94568320 to 94568333 13 + TSS region transcription start site region 78891
Tssr78892 8 94568337 to 94568358 21 + TSS region transcription start site region 78892
Tssr78893 8 94568360 to 94568375 15 + TSS region transcription start site region 78893
Tssr78894 8 94568421 to 94568435 14 + TSS region transcription start site region 78894
Tssr78895 8 94570170 to 94570183 13 + TSS region transcription start site region 78895
Cpgi20848 8 94574252 to 94574454 202 CpG island CpG island 20848
Fam192a 8 94574940 to 94601726 26786 - protein coding gene family with sequence similarity 192, member A
Tssr82499 8 94588079 to 94588093 14 - TSS region transcription start site region 82499
Tssr82500 8 94591383 to 94591388 5 - TSS region transcription start site region 82500
Tssr82501 8 94599706 to 94599714 8 - TSS region transcription start site region 82501
Cpgi20849 8 94600936 to 94602871 1935 CpG island CpG island 20849
Tssr82502 8 94601542 to 94601556 14 - TSS region transcription start site region 82502
Tssr82503 8 94601614 to 94601630 16 - TSS region transcription start site region 82503
Tssr82504 8 94601632 to 94601708 76 - TSS region transcription start site region 82504
Tssr82505 8 94601720 to 94601739 19 - TSS region transcription start site region 82505
Tssr78896 8 94601928 to 94602003 75 + TSS region transcription start site region 78896
Rspry1 8 94601941 to 94660276 58335 + protein coding gene ring finger and SPRY domain containing 1
Tssr78897 8 94602012 to 94602029 17 + TSS region transcription start site region 78897
Tssr78898 8 94602085 to 94602111 26 + TSS region transcription start site region 78898
Gm45797 8 94610777 to 94612697 1920 + unclassified gene predicted gene 45797
Gm18002 8 94640942 to 94641524 582 + pseudogene predicted gene, 18002
Cpgi20850 8 94666519 to 94667346 827 CpG island CpG island 20850
Arl2bp 8 94666600 to 94674425 7825 + protein coding gene ADP-ribosylation factor-like 2 binding protein
Tssr78899 8 94666614 to 94666650 36 + TSS region transcription start site region 78899
Tssr78900 8 94666652 to 94666676 24 + TSS region transcription start site region 78900
Tssr78901 8 94666700 to 94666711 11 + TSS region transcription start site region 78901
Tssr78902 8 94666722 to 94666769 47 + TSS region transcription start site region 78902
Tssr78903 8 94666776 to 94666787 11 + TSS region transcription start site region 78903
Tssr82506 8 94666949 to 94666987 38 - TSS region transcription start site region 82506
Tssr78904 8 94667082 to 94667128 46 + TSS region transcription start site region 78904
Tssr82507 8 94667128 to 94667137 9 - TSS region transcription start site region 82507
Tssr82508 8 94667203 to 94667216 13 - TSS region transcription start site region 82508
Pllp 8 94674895 to 94696242 21347 - protein coding gene plasma membrane proteolipid
Gm45767 8 94675606 to 94680166 4560 + antisense lncRNA gene predicted gene 45767
Tssr82509 8 94678725 to 94678739 14 - TSS region transcription start site region 82509
Cpgi20851 8 94695482 to 94696375 893 CpG island CpG island 20851
Tssr2653 8 94696178 to 94696200 22 - TSS region transcription start site region 2653
Tssr82510 8 94696223 to 94696287 64 - TSS region transcription start site region 82510
Gm22846 8 94698016 to 94698285 269 - unclassified non-coding RNA gene predicted gene, 22846
Cpgi20852 8 94703534 to 94703717 183 CpG island CpG island 20852
n-TLcag5 8 94703631 to 94703713 82 + tRNA gene nuclear encoded tRNA leucine 5 (anticodon CAG)
n-TLcag4 8 94704004 to 94704086 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon CAG)
Cpgi20853 8 94704230 to 94704760 530 CpG island CpG island 20853
Tssr82511 8 94711400 to 94711422 22 - TSS region transcription start site region 82511
D8Mit210 8 94743583 to 94743730 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 210
Tssr78905 8 94745677 to 94745693 16 + TSS region transcription start site region 78905
Ccl22 8 94745684 to 94751388 5704 + protein coding gene chemokine (C-C motif) ligand 22
Tssr78906 8 94746938 to 94746950 12 + TSS region transcription start site region 78906
Tssr78907 8 94749274 to 94749318 44 + TSS region transcription start site region 78907
Tssr78908 8 94749846 to 94749853 7 + TSS region transcription start site region 78908
Tssr78909 8 94749889 to 94749896 7 + TSS region transcription start site region 78909
Tssr2654 8 94749929 to 94749930 1 + TSS region transcription start site region 2654
Tssr78910 8 94750006 to 94750017 11 + TSS region transcription start site region 78910
Tssr78911 8 94750021 to 94750033 12 + TSS region transcription start site region 78911
Tssr78912 8 94750268 to 94750285 17 + TSS region transcription start site region 78912
Tssr78913 8 94750448 to 94750457 9 + TSS region transcription start site region 78913
Gnb1-ps3 8 94760288 to 94761237 949 + pseudogene guanine nucleotide binding protein (G protein), beta 1, pseudogene 3
Cpgi20854 8 94771865 to 94772404 539 CpG island CpG island 20854
Cx3cl1 8 94772180 to 94782427 10247 + protein coding gene chemokine (C-X3-C motif) ligand 1
Tssr78914 8 94772194 to 94772210 16 + TSS region transcription start site region 78914
Tssr78915 8 94779822 to 94779834 12 + TSS region transcription start site region 78915
Tssr78916 8 94780457 to 94780470 13 + TSS region transcription start site region 78916
Tssr78917 8 94780478 to 94780491 13 + TSS region transcription start site region 78917
Tssr78918 8 94780826 to 94780840 14 + TSS region transcription start site region 78918
Tssr78919 8 94781170 to 94781177 7 + TSS region transcription start site region 78919
1700121C10Rik 8 94794168 to 94802435 8267 unclassified gene RIKEN cDNA 1700121C10 gene
Tssr82512 8 94802463 to 94802464 1 - TSS region transcription start site region 82512
Tssr2655 8 94802470 to 94802473 3 - TSS region transcription start site region 2655
Tssr78920 8 94810446 to 94810461 15 + TSS region transcription start site region 78920
Ccl17 8 94810453 to 94812036 1583 + protein coding gene chemokine (C-C motif) ligand 17
Ciapin1 8 94819818 to 94838372 18554 - protein coding gene cytokine induced apoptosis inhibitor 1
Gm7418 8 94835717 to 94836517 800 + pseudogene predicted pseudogene 7418
Cpgi20855 8 94837636 to 94839012 1376 CpG island CpG island 20855
Tssr82513 8 94838207 to 94838246 39 - TSS region transcription start site region 82513
Tssr82514 8 94838255 to 94838336 81 - TSS region transcription start site region 82514
Tssr78921 8 94838388 to 94838425 37 + TSS region transcription start site region 78921
Coq9 8 94838417 to 94854895 16478 + protein coding gene coenzyme Q9
Tssr82515 8 94838810 to 94838845 35 - TSS region transcription start site region 82515
Tssr82516 8 94838854 to 94838864 10 - TSS region transcription start site region 82516
Cpgi20856 8 94857318 to 94858139 821 CpG island CpG island 20856
Polr2c 8 94857450 to 94864242 6792 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide C
Tssr78922 8 94857474 to 94857494 20 + TSS region transcription start site region 78922
Tssr2656 8 94857528 to 94857558 30 + TSS region transcription start site region 2656
Dok4 8 94863828 to 94876312 12484 - protein coding gene docking protein 4
Cpgi20857 8 94875595 to 94876720 1125 CpG island CpG island 20857
Tssr82517 8 94876250 to 94876263 13 - TSS region transcription start site region 82517
Tssr82518 8 94876269 to 94876321 52 - TSS region transcription start site region 82518
Tssr82519 8 94876324 to 94876335 11 - TSS region transcription start site region 82519
D8Mit109 8 94879159 to 94879291 132 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 109
Cpgi20858 8 94889165 to 94889373 208 CpG island CpG island 20858
D8Mit32 8 94894018 to 94894184 166 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 32
Ccdc102a 8 94902869 to 94918098 15229 - protein coding gene coiled-coil domain containing 102A
Cpgi20859 8 94912905 to 94914043 1138 CpG island CpG island 20859
Cpgi20860 8 94917405 to 94918387 982 CpG island CpG island 20860
Tssr82520 8 94918012 to 94918084 72 - TSS region transcription start site region 82520
Tssr78923 8 94923550 to 94923582 32 + TSS region transcription start site region 78923
Tssr78924 8 94923674 to 94923683 9 + TSS region transcription start site region 78924
Tssr78925 8 94923687 to 94923708 21 + TSS region transcription start site region 78925
Adgrg5 8 94923694 to 94943280 19586 + protein coding gene adhesion G protein-coupled receptor G5
Gm30968 8 94964677 to 94977041 12364 - lncRNA gene predicted gene, 30968
Gm10286 8 94964679 to 94969756 5077 - pseudogene predicted gene 10286
Tssr82521 8 94973327 to 94973330 3 - TSS region transcription start site region 82521
Tssr78926 8 94973567 to 94973569 2 + TSS region transcription start site region 78926
Tssr78927 8 94974686 to 94974700 14 + TSS region transcription start site region 78927
Tssr78928 8 94974704 to 94974721 17 + TSS region transcription start site region 78928
Adgrg1 8 94974756 to 95014208 39452 + protein coding gene adhesion G protein-coupled receptor G1
Tssr78929 8 94976879 to 94976893 14 + TSS region transcription start site region 78929
Tssr2657 8 94976981 to 94976986 5 - TSS region transcription start site region 2657
Tssr78930 8 94977101 to 94977123 22 + TSS region transcription start site region 78930
Cpgi20861 8 94977258 to 94977729 471 CpG island CpG island 20861
Tssr78931 8 94977277 to 94977288 11 + TSS region transcription start site region 78931
Tssr78932 8 94977296 to 94977309 13 + TSS region transcription start site region 78932
Tssr78933 8 94977330 to 94977337 7 + TSS region transcription start site region 78933
Tssr78934 8 94977352 to 94977368 16 + TSS region transcription start site region 78934
Tssr78935 8 94977378 to 94977392 14 + TSS region transcription start site region 78935
Tssr2658 8 94978897 to 94978906 9 + TSS region transcription start site region 2658
Tssr78936 8 94982173 to 94982177 4 + TSS region transcription start site region 78936
Tssr2659 8 94984029 to 94984041 12 + TSS region transcription start site region 2659
Tssr78937 8 94984349 to 94984361 12 + TSS region transcription start site region 78937
Tssr78938 8 94984409 to 94984477 68 + TSS region transcription start site region 78938
Tssr78939 8 94985440 to 94985451 11 + TSS region transcription start site region 78939
Tssr78940 8 94985523 to 94985568 45 + TSS region transcription start site region 78940
Tssr2660 8 94985606 to 94985609 3 + TSS region transcription start site region 2660
Tssr78941 8 94992683 to 94992702 19 + TSS region transcription start site region 78941
Tssr78942 8 94992853 to 94992874 21 + TSS region transcription start site region 78942
Tssr78943 8 94992920 to 94992937 17 + TSS region transcription start site region 78943
Tssr78944 8 94994238 to 94994327 89 + TSS region transcription start site region 78944
Tssr78945 8 94994365 to 94994390 25 + TSS region transcription start site region 78945
Tssr78946 8 94994393 to 94994433 40 + TSS region transcription start site region 78946
Tssr78947 8 94994693 to 94994721 28 + TSS region transcription start site region 78947
Tssr78948 8 94994745 to 94994789 44 + TSS region transcription start site region 78948
Tssr78949 8 94994793 to 94994803 10 + TSS region transcription start site region 78949
Tssr78950 8 94994840 to 94994852 12 + TSS region transcription start site region 78950
Tssr78951 8 94995591 to 94995621 30 + TSS region transcription start site region 78951
Tssr78952 8 94995683 to 94995694 11 + TSS region transcription start site region 78952
Tssr78953 8 94995704 to 94995748 44 + TSS region transcription start site region 78953
Tssr78954 8 94995750 to 94995761 11 + TSS region transcription start site region 78954
Tssr78955 8 95002409 to 95002451 42 + TSS region transcription start site region 78955
Tssr78956 8 95003368 to 95003427 59 + TSS region transcription start site region 78956
Tssr78957 8 95013286 to 95013313 27 + TSS region transcription start site region 78957
Adgrg3 8 95017692 to 95045250 27558 + protein coding gene adhesion G protein-coupled receptor G3
Tssr78958 8 95017707 to 95017726 19 + TSS region transcription start site region 78958
Tssr78959 8 95017734 to 95017755 21 + TSS region transcription start site region 78959
Tssr82522 8 95020225 to 95020228 3 - TSS region transcription start site region 82522
Tssr78960 8 95020441 to 95020452 11 + TSS region transcription start site region 78960
Tssr82523 8 95020670 to 95020683 13 - TSS region transcription start site region 82523
Tssr78961 8 95020706 to 95020719 13 + TSS region transcription start site region 78961
Tssr78962 8 95020751 to 95020762 11 + TSS region transcription start site region 78962
Tssr78963 8 95020789 to 95020819 30 + TSS region transcription start site region 78963
Tssr78964 8 95020824 to 95020845 21 + TSS region transcription start site region 78964
Tssr78965 8 95020874 to 95020891 17 + TSS region transcription start site region 78965
Tssr78966 8 95020903 to 95020943 40 + TSS region transcription start site region 78966
Tssr82524 8 95020990 to 95021000 10 - TSS region transcription start site region 82524
Tssr82525 8 95021007 to 95021016 9 - TSS region transcription start site region 82525
Tssr82526 8 95024498 to 95024522 24 - TSS region transcription start site region 82526
Tssr82527 8 95037120 to 95037131 11 - TSS region transcription start site region 82527
Gm45757 8 95045981 to 95047460 1479 + unclassified gene predicted gene 45757
Tssr78967 8 95049997 to 95050001 4 + TSS region transcription start site region 78967
Tssr78968 8 95055094 to 95055126 32 + TSS region transcription start site region 78968
Drc7 8 95055103 to 95078141 23038 + protein coding gene dynein regulatory complex subunit 7
Tssr78969 8 95056655 to 95056666 11 + TSS region transcription start site region 78969
Tssr78970 8 95056669 to 95056678 9 + TSS region transcription start site region 78970
Tssr78971 8 95056683 to 95056696 13 + TSS region transcription start site region 78971
Tssr78972 8 95056703 to 95056712 9 + TSS region transcription start site region 78972
Tssr82528 8 95056907 to 95056949 42 - TSS region transcription start site region 82528
Tssr78973 8 95058386 to 95058392 6 + TSS region transcription start site region 78973
Tssr78974 8 95059021 to 95059065 44 + TSS region transcription start site region 78974
Tssr2661 8 95062518 to 95062519 1 + TSS region transcription start site region 2661
Cpgi20862 8 95074106 to 95074379 273 CpG island CpG island 20862
Cpgi20863 8 95076211 to 95076421 210 CpG island CpG island 20863
Cpgi20864 8 95080401 to 95081891 1490 CpG island CpG island 20864
Katnb1 8 95081175 to 95099874 18699 + protein coding gene katanin p80 (WD40-containing) subunit B 1
Tssr78975 8 95081187 to 95081205 18 + TSS region transcription start site region 78975
Tssr78976 8 95081206 to 95081286 80 + TSS region transcription start site region 78976
Gm45758 8 95089671 to 95090676 1005 - unclassified gene predicted gene 45758
Kifc3 8 95099828 to 95202812 102984 - protein coding gene kinesin family member C3
Tssr82529 8 95113334 to 95113347 13 - TSS region transcription start site region 82529
Tssr78977 8 95113433 to 95113458 25 + TSS region transcription start site region 78977
Gm31224 8 95113754 to 95129609 15855 + antisense lncRNA gene predicted gene, 31224