Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:94215471-94705475

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carcdq1 8 39709256 to 94689598 54980342 QTL cardiac collagen deposition QTL 1
Nup93 8 94214540 to 94315066 100526 + protein coding gene nucleoporin 93
Tssr78831 8 94222947 to 94222949 2 + TSS region transcription start site region 78831
Rpl10-ps5 8 94222993 to 94223634 641 + pseudogene ribosomal protein L10, pseudogene 5
Tssr78832 8 94227534 to 94227611 77 + TSS region transcription start site region 78832
Tssr78833 8 94227652 to 94227673 21 + TSS region transcription start site region 78833
Tssr78834 8 94266825 to 94266838 13 + TSS region transcription start site region 78834
Tssr78835 8 94267086 to 94267101 15 + TSS region transcription start site region 78835
Tssr78836 8 94267105 to 94267151 46 + TSS region transcription start site region 78836
Gm45804 8 94273426 to 94276860 3434 + unclassified gene predicted gene 45804
C78859 8 94322158 to 94328100 5942 + lincRNA gene expressed sequence C78859
Mir138-2 8 94324311 to 94324381 70 + miRNA gene microRNA 138-2
Tssr78837 8 94329201 to 94329217 16 + TSS region transcription start site region 78837
Slc12a3 8 94329201 to 94366214 37013 + protein coding gene solute carrier family 12, member 3
Tssr78838 8 94329626 to 94329653 27 + TSS region transcription start site region 78838
Tssr2648 8 94340520 to 94340531 11 + TSS region transcription start site region 2648
Tssr2649 8 94340562 to 94340570 8 + TSS region transcription start site region 2649
Tssr78839 8 94347406 to 94347419 13 + TSS region transcription start site region 78839
Tssr78840 8 94354996 to 94355003 7 + TSS region transcription start site region 78840
Tssr78841 8 94355046 to 94355089 43 + TSS region transcription start site region 78841
Tssr2650 8 94355159 to 94355168 9 + TSS region transcription start site region 2650
Tssr2651 8 94355192 to 94355195 3 + TSS region transcription start site region 2651
Tssr78842 8 94355797 to 94355799 2 + TSS region transcription start site region 78842
Tssr78843 8 94355889 to 94355909 20 + TSS region transcription start site region 78843
Tssr78844 8 94358137 to 94358155 18 + TSS region transcription start site region 78844
Tssr82493 8 94364029 to 94364035 6 - TSS region transcription start site region 82493
Tssr78845 8 94365848 to 94365860 12 + TSS region transcription start site region 78845
Tssr78846 8 94365894 to 94365900 6 + TSS region transcription start site region 78846
Tssr78847 8 94366099 to 94366113 14 + TSS region transcription start site region 78847
Tssr82494 8 94375807 to 94375820 13 - TSS region transcription start site region 82494
Tssr78848 8 94377852 to 94377864 12 + TSS region transcription start site region 78848
Tssr78849 8 94377868 to 94377881 13 + TSS region transcription start site region 78849
Gm15889 8 94377872 to 94380317 2445 + lincRNA gene predicted gene 15889
Tssr78850 8 94377882 to 94377893 11 + TSS region transcription start site region 78850
Tssr78851 8 94377896 to 94377907 11 + TSS region transcription start site region 78851
Tssr78852 8 94377911 to 94377938 27 + TSS region transcription start site region 78852
Gm15890 8 94379184 to 94386972 7788 - antisense lncRNA gene predicted gene 15890
Cpgi20845 8 94385925 to 94387533 1608 CpG island CpG island 20845
Tssr78853 8 94386167 to 94386174 7 + TSS region transcription start site region 78853
Tssr78854 8 94386178 to 94386206 28 + TSS region transcription start site region 78854
Herpud1 8 94386438 to 94395377 8939 + protein coding gene homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
Tssr78855 8 94386467 to 94386468 1 + TSS region transcription start site region 78855
Tssr78856 8 94386486 to 94386509 23 + TSS region transcription start site region 78856
Tssr78857 8 94386510 to 94386519 9 + TSS region transcription start site region 78857
Tssr78858 8 94386523 to 94386534 11 + TSS region transcription start site region 78858
Tssr78859 8 94388193 to 94388198 5 + TSS region transcription start site region 78859
Tssr78860 8 94393544 to 94393548 4 + TSS region transcription start site region 78860
Tssr78861 8 94394814 to 94394827 13 + TSS region transcription start site region 78861
Ap3s1-ps2 8 94405211 to 94405789 578 + pseudogene adaptor-related protein complex 3, sigma 1 subunit, pseudogene 2
Tssr78862 8 94415457 to 94415488 31 + TSS region transcription start site region 78862
9330175E14Rik 8 94433127 to 94435103 1976 - lincRNA gene RIKEN cDNA 9330175E14 gene
Cpgi20846 8 94433871 to 94434581 710 CpG island CpG island 20846
Tssr82495 8 94434142 to 94434170 28 - TSS region transcription start site region 82495
Tssr82496 8 94434259 to 94434297 38 - TSS region transcription start site region 82496
Tssr78863 8 94434343 to 94434354 11 + TSS region transcription start site region 78863
Nlrc5 8 94434356 to 94527272 92916 + protein coding gene NLR family, CARD domain containing 5
Tssr78864 8 94434378 to 94434403 25 + TSS region transcription start site region 78864
Tssr78865 8 94434723 to 94434744 21 + TSS region transcription start site region 78865
Tssr78866 8 94446332 to 94446334 2 + TSS region transcription start site region 78866
Tssr78867 8 94449667 to 94449672 5 + TSS region transcription start site region 78867
Tssr78868 8 94449769 to 94449796 27 + TSS region transcription start site region 78868
Tssr78869 8 94450202 to 94450213 11 + TSS region transcription start site region 78869
Tssr78870 8 94460471 to 94460475 4 + TSS region transcription start site region 78870
Tssr78871 8 94460525 to 94460534 9 + TSS region transcription start site region 78871
Tssr78872 8 94460776 to 94460779 3 + TSS region transcription start site region 78872
Tssr78873 8 94478644 to 94478661 17 + TSS region transcription start site region 78873
Tssr78874 8 94478694 to 94478722 28 + TSS region transcription start site region 78874
Tssr78875 8 94479876 to 94479907 31 + TSS region transcription start site region 78875
Tssr78876 8 94480584 to 94480597 13 + TSS region transcription start site region 78876
Tssr78877 8 94480681 to 94480692 11 + TSS region transcription start site region 78877
Tssr78878 8 94480698 to 94480712 14 + TSS region transcription start site region 78878
D8Mit311 8 94485588 to 94485710 122 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 311
Mir7072 8 94505046 to 94505105 59 + miRNA gene microRNA 7072
Tssr78879 8 94513305 to 94513322 17 + TSS region transcription start site region 78879
Tssr78880 8 94513330 to 94513341 11 + TSS region transcription start site region 78880
Tssr2652 8 94524844 to 94524854 10 + TSS region transcription start site region 2652
Tssr78881 8 94524872 to 94524882 10 + TSS region transcription start site region 78881
Tssr78882 8 94526814 to 94526818 4 + TSS region transcription start site region 78882
Tssr78883 8 94531541 to 94531548 7 + TSS region transcription start site region 78883
Cpgi20847 8 94532439 to 94533751 1312 CpG island CpG island 20847
Tssr82497 8 94532905 to 94532917 12 - TSS region transcription start site region 82497
Tssr82498 8 94532918 to 94532932 14 - TSS region transcription start site region 82498
Cpne2 8 94532990 to 94570531 37541 + protein coding gene copine II
Tssr78884 8 94532991 to 94532996 5 + TSS region transcription start site region 78884
Tssr78885 8 94533009 to 94533074 65 + TSS region transcription start site region 78885
Tssr78886 8 94533103 to 94533114 11 + TSS region transcription start site region 78886
Tssr78887 8 94544172 to 94544185 13 + TSS region transcription start site region 78887
Gm38555 8 94550579 to 94568584 18005 - lncRNA gene predicted gene, 38555
Tssr78888 8 94555970 to 94555989 19 + TSS region transcription start site region 78888
D8Mit182 8 94559987 to 94560125 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 182
Tssr78889 8 94562373 to 94562376 3 + TSS region transcription start site region 78889
Tssr78890 8 94564700 to 94564718 18 + TSS region transcription start site region 78890
Tssr78891 8 94568320 to 94568333 13 + TSS region transcription start site region 78891
Tssr78892 8 94568337 to 94568358 21 + TSS region transcription start site region 78892
Tssr78893 8 94568360 to 94568375 15 + TSS region transcription start site region 78893
Tssr78894 8 94568421 to 94568435 14 + TSS region transcription start site region 78894
Tssr78895 8 94570170 to 94570183 13 + TSS region transcription start site region 78895
Cpgi20848 8 94574252 to 94574454 202 CpG island CpG island 20848
Fam192a 8 94574940 to 94601726 26786 - protein coding gene family with sequence similarity 192, member A
Tssr82499 8 94588079 to 94588093 14 - TSS region transcription start site region 82499
Tssr82500 8 94591383 to 94591388 5 - TSS region transcription start site region 82500
Tssr82501 8 94599706 to 94599714 8 - TSS region transcription start site region 82501
Cpgi20849 8 94600936 to 94602871 1935 CpG island CpG island 20849
Tssr82502 8 94601542 to 94601556 14 - TSS region transcription start site region 82502
Tssr82503 8 94601614 to 94601630 16 - TSS region transcription start site region 82503
Tssr82504 8 94601632 to 94601708 76 - TSS region transcription start site region 82504
Tssr82505 8 94601720 to 94601739 19 - TSS region transcription start site region 82505
Tssr78896 8 94601928 to 94602003 75 + TSS region transcription start site region 78896
Rspry1 8 94601941 to 94660276 58335 + protein coding gene ring finger and SPRY domain containing 1
Tssr78897 8 94602012 to 94602029 17 + TSS region transcription start site region 78897
Tssr78898 8 94602085 to 94602111 26 + TSS region transcription start site region 78898
Gm45797 8 94610777 to 94612697 1920 + unclassified gene predicted gene 45797
Gm18002 8 94640942 to 94641524 582 + pseudogene predicted gene, 18002
Cpgi20850 8 94666519 to 94667346 827 CpG island CpG island 20850
Arl2bp 8 94666600 to 94674425 7825 + protein coding gene ADP-ribosylation factor-like 2 binding protein
Tssr78899 8 94666614 to 94666650 36 + TSS region transcription start site region 78899
Tssr78900 8 94666652 to 94666676 24 + TSS region transcription start site region 78900
Tssr78901 8 94666700 to 94666711 11 + TSS region transcription start site region 78901
Tssr78902 8 94666722 to 94666769 47 + TSS region transcription start site region 78902
Tssr78903 8 94666776 to 94666787 11 + TSS region transcription start site region 78903
Tssr82506 8 94666949 to 94666987 38 - TSS region transcription start site region 82506
Tssr78904 8 94667082 to 94667128 46 + TSS region transcription start site region 78904
Tssr82507 8 94667128 to 94667137 9 - TSS region transcription start site region 82507
Tssr82508 8 94667203 to 94667216 13 - TSS region transcription start site region 82508
Pllp 8 94674895 to 94696242 21347 - protein coding gene plasma membrane proteolipid
Gm45767 8 94675606 to 94680166 4560 + antisense lncRNA gene predicted gene 45767
Tssr82509 8 94678725 to 94678739 14 - TSS region transcription start site region 82509
Cpgi20851 8 94695482 to 94696375 893 CpG island CpG island 20851
Tssr2653 8 94696178 to 94696200 22 - TSS region transcription start site region 2653
Tssr82510 8 94696223 to 94696287 64 - TSS region transcription start site region 82510
Gm22846 8 94698016 to 94698285 269 - unclassified non-coding RNA gene predicted gene, 22846
Cpgi20852 8 94703534 to 94703717 183 CpG island CpG island 20852
n-TLcag5 8 94703631 to 94703713 82 + tRNA gene nuclear encoded tRNA leucine 5 (anticodon CAG)
n-TLcag4 8 94704004 to 94704086 82 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon CAG)
Cpgi20853 8 94704230 to 94704760 530 CpG island CpG island 20853