Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:91889273-93209274

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capsq4 8 36163000 to 92728652 56565652 QTL capsaicin sensitivity related QTL 4
nmf242 8 84220392 to 92685497 8465105 heritable phenotypic marker neuroscience mutagenesis facility, 242
Fts 8 90905517 to 92728652 1823135 heritable phenotypic marker fused toes
Gm28515 8 91907565 to 91913066 5501 - lincRNA gene predicted gene 28515
D8Mit147 8 91954072 to 91954211 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 147
Gm36670 8 91974263 to 91991849 17586 - lincRNA gene predicted gene, 36670
Gm36843 8 91997594 to 92009006 11412 + lincRNA gene predicted gene, 36843
Gm28516 8 92024442 to 92038438 13996 + lincRNA gene predicted gene 28516
Gm24254 8 92039917 to 92040020 103 + snRNA gene predicted gene, 24254
Tssr82426 8 92059691 to 92059695 4 - TSS region transcription start site region 82426
D8Mit1006 8 92070043 to 92070192 149 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 1006
Tssr78739 8 92097311 to 92097317 6 + TSS region transcription start site region 78739
Gm45332 8 92152096 to 92158266 6170 - lincRNA gene predicted gene 45332
Tssr82427 8 92158274 to 92158283 9 - TSS region transcription start site region 82427
Gm45335 8 92172587 to 92189124 16537 + lincRNA gene predicted gene 45335
Tssr78740 8 92189429 to 92189440 11 + TSS region transcription start site region 78740
Tssr78741 8 92189450 to 92189466 16 + TSS region transcription start site region 78741
Tssr78742 8 92193362 to 92193367 5 + TSS region transcription start site region 78742
Gm45334 8 92233125 to 92247959 14834 + lincRNA gene predicted gene 45334
Tssr2645 8 92251253 to 92251259 6 - TSS region transcription start site region 2645
Crnde 8 92326033 to 92356120 30087 - lncRNA gene colorectal neoplasia differentially expressed (non-protein coding)
Gm21817 8 92336668 to 92339250 2582 - lincRNA gene predicted gene, 21817
Tssr82428 8 92354580 to 92354604 24 - TSS region transcription start site region 82428
Tssr82429 8 92355495 to 92355506 11 - TSS region transcription start site region 82429
Cpgi20818 8 92355587 to 92360909 5322 CpG island CpG island 20818
Tssr82430 8 92355836 to 92355852 16 - TSS region transcription start site region 82430
Tssr2646 8 92355856 to 92355879 23 - TSS region transcription start site region 2646
Tssr82431 8 92355885 to 92355915 30 - TSS region transcription start site region 82431
Tssr78743 8 92355963 to 92356009 46 + TSS region transcription start site region 78743
Tssr82432 8 92356103 to 92356119 16 - TSS region transcription start site region 82432
Tssr82433 8 92356122 to 92356143 21 - TSS region transcription start site region 82433
Tssr82434 8 92357582 to 92357605 23 - TSS region transcription start site region 82434
Tssr78744 8 92357740 to 92357751 11 + TSS region transcription start site region 78744
Tssr78745 8 92357787 to 92357801 14 + TSS region transcription start site region 78745
Irx5 8 92357796 to 92361456 3660 + protein coding gene Iroquois homeobox 5
Tssr78746 8 92357834 to 92357891 57 + TSS region transcription start site region 78746
Tssr78747 8 92357973 to 92357988 15 + TSS region transcription start site region 78747
Tssr78748 8 92358003 to 92358011 8 + TSS region transcription start site region 78748
Tssr78749 8 92358308 to 92358327 19 + TSS region transcription start site region 78749
Cpgi20819 8 92363370 to 92363678 308 CpG island CpG island 20819
Cpgi20820 8 92365502 to 92365889 387 CpG island CpG island 20820
Cpgi20821 8 92366529 to 92366899 370 CpG island CpG island 20821
Cpgi20822 8 92460050 to 92461353 1303 CpG island CpG island 20822
Gm45336 8 92465767 to 92469665 3898 + lincRNA gene predicted gene 45336
D8Mit267 8 92548074 to 92548180 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 267
Tssr78750 8 92549273 to 92549274 1 + TSS region transcription start site region 78750
Cpgi20823 8 92673362 to 92675031 1669 CpG island CpG island 20823
Irx6 8 92674289 to 92680956 6667 + protein coding gene Iroquois homeobox 6
Lith18 8 92675517 to 92675623 106 QTL lithogenic gene 18
D8Mit284 8 92675517 to 92675623 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 284
Cpgi20824 8 92678251 to 92678667 416 CpG island CpG island 20824
Gm45505 8 92680172 to 92682194 2022 - antisense lncRNA gene predicted gene 45505
Obq16 8 92685348 to 92685497 149 QTL obesity QTL 16
Nhdlq14 8 92685348 to 92685497 149 QTL non-HDL QTL 14
D8Mit248 8 92685348 to 92685497 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 248
Hdlq16 8 92685348 to 92685497 149 QTL HDL QTL 16
Gm3272 8 92715746 to 92716946 1200 - pseudogene predicted pseudogene 3272
D8Mit240 8 92728530 to 92728652 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 240
Tssr78751 8 92815404 to 92815413 9 + TSS region transcription start site region 78751
Tssr78752 8 92826257 to 92826274 17 + TSS region transcription start site region 78752
Tssr78753 8 92827273 to 92827395 122 + TSS region transcription start site region 78753
Mmp2 8 92827291 to 92853420 26129 + protein coding gene matrix metallopeptidase 2
Cpgi20825 8 92827344 to 92827860 516 CpG island CpG island 20825
Tssr78754 8 92827396 to 92827429 33 + TSS region transcription start site region 78754
Tssr78755 8 92827434 to 92827439 5 + TSS region transcription start site region 78755
Tssr78756 8 92827448 to 92827457 9 + TSS region transcription start site region 78756
Cpgi20826 8 92828543 to 92828707 164 CpG island CpG island 20826
Tssr78757 8 92830764 to 92830807 43 + TSS region transcription start site region 78757
Tssr78758 8 92840162 to 92840175 13 + TSS region transcription start site region 78758
Tssr78759 8 92840223 to 92840235 12 + TSS region transcription start site region 78759
Tssr78760 8 92840432 to 92840457 25 + TSS region transcription start site region 78760
Gm45472 8 92853653 to 92856334 2681 - antisense lncRNA gene predicted gene 45472
Tssr82435 8 92854829 to 92854833 4 - TSS region transcription start site region 82435
Cpgi20827 8 92855148 to 92856066 918 CpG island CpG island 20827
Tssr82436 8 92855256 to 92855298 42 - TSS region transcription start site region 82436
Tssr78761 8 92855319 to 92855400 81 + TSS region transcription start site region 78761
Lpcat2 8 92855339 to 92919279 63940 + protein coding gene lysophosphatidylcholine acyltransferase 2
Tssr78762 8 92855404 to 92855415 11 + TSS region transcription start site region 78762
Tssr78763 8 92864881 to 92864883 2 + TSS region transcription start site region 78763
Tssr78764 8 92880780 to 92880795 15 + TSS region transcription start site region 78764
Tssr78765 8 92882120 to 92882146 26 + TSS region transcription start site region 78765
Tssr78766 8 92885865 to 92885879 14 + TSS region transcription start site region 78766
Tssr78767 8 92887400 to 92887416 16 + TSS region transcription start site region 78767
Tssr78768 8 92887449 to 92887457 8 + TSS region transcription start site region 78768
Tssr78769 8 92892635 to 92892670 35 + TSS region transcription start site region 78769
Tssr78770 8 92901369 to 92901380 11 + TSS region transcription start site region 78770
Tssr78771 8 92901387 to 92901411 24 + TSS region transcription start site region 78771
Capns2 8 92901407 to 92902411 1004 + protein coding gene calpain, small subunit 2
Tssr78772 8 92901419 to 92901437 18 + TSS region transcription start site region 78772
Tssr78773 8 92901438 to 92901447 9 + TSS region transcription start site region 78773
Tssr78774 8 92901448 to 92901466 18 + TSS region transcription start site region 78774
Tssr78775 8 92911719 to 92911728 9 + TSS region transcription start site region 78775
Tssr78776 8 92911766 to 92911777 11 + TSS region transcription start site region 78776
Gm22151 8 92913132 to 92913189 57 - miRNA gene predicted gene, 22151
Tssr78777 8 92918324 to 92918327 3 + TSS region transcription start site region 78777
Gm2947 8 92922522 to 92922870 348 + pseudogene predicted gene 2947
20.MMHAP88FRG8.seq 8 92941728 to 92941913 185 DNA segment DNA segment, 20.MMHAP88FRG8.seq
Cpgi20828 8 92960324 to 92961577 1253 CpG island CpG island 20828
Slc6a2 8 92960418 to 93001667 41249 + protein coding gene solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
Tssr78778 8 92960572 to 92960584 12 + TSS region transcription start site region 78778
Tssr78779 8 92960600 to 92960616 16 + TSS region transcription start site region 78779
Tssr78780 8 92961027 to 92961044 17 + TSS region transcription start site region 78780
Tssr78781 8 92961343 to 92961354 11 + TSS region transcription start site region 78781
Tssr78782 8 92961365 to 92961380 15 + TSS region transcription start site region 78782
Tssr78783 8 92994647 to 92994652 5 + TSS region transcription start site region 78783
Tssr78784 8 93011568 to 93011590 22 + TSS region transcription start site region 78784
Tssr78785 8 93011598 to 93011615 17 + TSS region transcription start site region 78785
Gm45463 8 93011619 to 93041516 29897 + unclassified non-coding RNA gene predicted gene 45463
Tssr78786 8 93012439 to 93012482 43 + TSS region transcription start site region 78786
Tssr78787 8 93017066 to 93017104 38 + TSS region transcription start site region 78787
Ces1a 8 93020214 to 93048192 27978 - protein coding gene carboxylesterase 1A
Ces1b 8 93056728 to 93080017 23289 - protein coding gene carboxylesterase 1B
Tssr82437 8 93079936 to 93079946 10 - TSS region transcription start site region 82437
Tssr82438 8 93079965 to 93079974 9 - TSS region transcription start site region 82438
Ces1c 8 93099015 to 93131283 32268 - protein coding gene carboxylesterase 1C
Tssr82439 8 93100409 to 93100421 12 - TSS region transcription start site region 82439
Tssr82440 8 93121583 to 93121586 3 - TSS region transcription start site region 82440
Tssr82441 8 93123197 to 93123211 14 - TSS region transcription start site region 82441
Tssr82442 8 93130868 to 93130907 39 - TSS region transcription start site region 82442
Tssr82443 8 93131274 to 93131291 17 - TSS region transcription start site region 82443
Gm45910 8 93144487 to 93154437 9950 - pseudogene predicted gene 45910
Tssr82444 8 93154448 to 93154452 4 - TSS region transcription start site region 82444
Tssr78788 8 93159075 to 93159079 4 + TSS region transcription start site region 78788
Ces1d 8 93166072 to 93197804 31732 - protein coding gene carboxylesterase 1D
Tssr78789 8 93175569 to 93175570 1 + TSS region transcription start site region 78789
Tssr82445 8 93187801 to 93187804 3 - TSS region transcription start site region 82445
Gm45909 8 93190328 to 93191358 1030 - unclassified gene predicted gene 45909
Tssr82446 8 93191870 to 93191882 12 - TSS region transcription start site region 82446
Tssr82447 8 93191898 to 93191917 19 - TSS region transcription start site region 82447
Tssr82448 8 93195077 to 93195081 4 - TSS region transcription start site region 82448
Tssr82449 8 93197732 to 93197759 27 - TSS region transcription start site region 82449
Tssr82450 8 93197771 to 93197788 17 - TSS region transcription start site region 82450
Tssr82451 8 93197799 to 93197809 10 - TSS region transcription start site region 82451
Ces1e 8 93201218 to 93229619 28401 - protein coding gene carboxylesterase 1E