Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:9129171-10291086

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4933430N04Rik 8 9125412 to 9132288 6876 - lncRNA gene RIKEN cDNA 4933430N04 gene
Gm31810 8 9141110 to 9144570 3460 - lncRNA gene predicted gene, 31810
Tssr80313 8 9144531 to 9144555 24 - TSS region transcription start site region 80313
Tssr76161 8 9144600 to 9144641 41 + TSS region transcription start site region 76161
4930453L07Rik 8 9144669 to 9149050 4381 + lincRNA gene RIKEN cDNA 4930453L07 gene
Gm31726 8 9148011 to 9152138 4127 - lncRNA gene predicted gene, 31726
Gm44516 8 9152600 to 9157221 4621 - lincRNA gene predicted gene 44516
Gm39128 8 9167556 to 9174779 7223 + lincRNA gene predicted gene, 39128
D8Mit157 8 9167851 to 9167991 140 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 157
Fam155a 8 9205902 to 9771161 565259 - protein coding gene family with sequence similarity 155, member A
Tssr80314 8 9207276 to 9207295 19 - TSS region transcription start site region 80314
Tssr80315 8 9207368 to 9207382 14 - TSS region transcription start site region 80315
Cpgi20068 8 9207627 to 9207993 366 CpG island CpG island 20068
Gm44542 8 9213097 to 9217410 4313 - unclassified gene predicted gene 44542
Gm44541 8 9342220 to 9345126 2906 - unclassified gene predicted gene 44541
Gm44518 8 9370957 to 9375326 4369 - unclassified gene predicted gene 44518
Tssr80316 8 9394044 to 9394048 4 - TSS region transcription start site region 80316
Tssr80317 8 9414846 to 9414859 13 - TSS region transcription start site region 80317
Tssr76162 8 9417990 to 9417993 3 + TSS region transcription start site region 76162
Tssr80318 8 9428665 to 9428672 7 - TSS region transcription start site region 80318
4930435N07Rik 8 9459092 to 9461218 2126 + unclassified gene RIKEN cDNA 4930435N07 gene
Tssr2485 8 9506265 to 9506275 10 + TSS region transcription start site region 2485
Tssr80319 8 9545190 to 9545200 10 - TSS region transcription start site region 80319
Tssr80320 8 9559183 to 9559206 23 - TSS region transcription start site region 80320
Tssr80321 8 9559234 to 9559251 17 - TSS region transcription start site region 80321
Tssr80322 8 9559257 to 9559269 12 - TSS region transcription start site region 80322
Tssr80323 8 9559294 to 9559334 40 - TSS region transcription start site region 80323
n-R5s95 8 9568132 to 9568249 117 - rRNA gene nuclear encoded rRNA 5S 95
Tssr80324 8 9589586 to 9589590 4 - TSS region transcription start site region 80324
Gm44797 8 9595109 to 9596945 1836 - unclassified gene predicted gene 44797
Gm44800 8 9598799 to 9600653 1854 - unclassified gene predicted gene 44800
Gm44801 8 9603823 to 9605882 2059 - unclassified gene predicted gene 44801
Gm44798 8 9618153 to 9620562 2409 - unclassified gene predicted gene 44798
Tssr80325 8 9625132 to 9625150 18 - TSS region transcription start site region 80325
1700027A13Rik 8 9628101 to 9628418 317 unclassified gene RIKEN cDNA 1700027A13 gene
Gm44799 8 9658248 to 9659449 1201 - unclassified gene predicted gene 44799
Tssr80326 8 9672681 to 9672697 16 - TSS region transcription start site region 80326
2900027M19Rik 8 9685829 to 9690276 4447 - unclassified non-coding RNA gene RIKEN cDNA 2900027M19 gene
Tssr80327 8 9702589 to 9702592 3 - TSS region transcription start site region 80327
Gm44802 8 9709171 to 9711086 1915 - unclassified gene predicted gene 44802
Tssr80328 8 9727182 to 9727186 4 - TSS region transcription start site region 80328
Tssr80329 8 9728021 to 9728047 26 - TSS region transcription start site region 80329
Tssr80330 8 9758548 to 9758576 28 - TSS region transcription start site region 80330
Tssr80331 8 9762473 to 9762493 20 - TSS region transcription start site region 80331
Cpgi20069 8 9770015 to 9772668 2653 CpG island CpG island 20069
Gm47312 8 9770728 to 9770880 152 - miRNA gene predicted gene, 47312
Tssr80332 8 9771486 to 9771525 39 - TSS region transcription start site region 80332
Cpgi20070 8 9797170 to 9797389 219 CpG island CpG island 20070
Cpgi20071 8 9797890 to 9798080 190 CpG island CpG island 20071
Gm44761 8 9800194 to 9811974 11780 + lincRNA gene predicted gene 44761
Gm10217 8 9864251 to 9870315 6064 + protein coding gene predicted gene 10217
Gm10067 8 9875530 to 9919463 43933 - lincRNA gene predicted gene 10067
Lig4 8 9970020 to 9977681 7661 - protein coding gene ligase IV, DNA, ATP-dependent
Cpgi20072 8 9976032 to 9976613 581 CpG island CpG island 20072
Tssr80333 8 9976215 to 9976254 39 - TSS region transcription start site region 80333
Tssr80334 8 9976266 to 9976286 20 - TSS region transcription start site region 80334
Tssr80335 8 9976294 to 9976335 41 - TSS region transcription start site region 80335
Tssr80336 8 9976340 to 9976355 15 - TSS region transcription start site region 80336
Cpgi20073 8 9977548 to 9978595 1047 CpG island CpG island 20073
Tssr80337 8 9977650 to 9977690 40 - TSS region transcription start site region 80337
Tssr76163 8 9977711 to 9977725 14 + TSS region transcription start site region 76163
Abhd13 8 9977717 to 9992155 14438 + protein coding gene abhydrolase domain containing 13
Tssr76164 8 9977733 to 9977763 30 + TSS region transcription start site region 76164
Tssr76165 8 9977766 to 9977788 22 + TSS region transcription start site region 76165
Tssr76166 8 9977810 to 9977848 38 + TSS region transcription start site region 76166
Tssr76167 8 9977851 to 9977872 21 + TSS region transcription start site region 76167
Gm10703 8 10003512 to 10007538 4026 protein coding gene predicted gene 10703
Tnfsf13b 8 10006203 to 10036000 29797 + protein coding gene tumor necrosis factor (ligand) superfamily, member 13b
Tssr76168 8 10006428 to 10006455 27 + TSS region transcription start site region 76168
Tssr76169 8 10006631 to 10006653 22 + TSS region transcription start site region 76169
Tssr76170 8 10006656 to 10006702 46 + TSS region transcription start site region 76170
Tssr76171 8 10006784 to 10006810 26 + TSS region transcription start site region 76171
Cpgi20074 8 10007070 to 10007574 504 CpG island CpG island 20074
Gm44789 8 10016427 to 10019527 3100 - unclassified gene predicted gene 44789
Gm44788 8 10065054 to 10119632 54578 + lincRNA gene predicted gene 44788
Cpgi20075 8 10153657 to 10154434 777 CpG island CpG island 20075
Myo16 8 10153911 to 10634742 480831 + protein coding gene myosin XVI
Tssr76172 8 10153940 to 10153984 44 + TSS region transcription start site region 76172
Tssr76173 8 10154096 to 10154158 62 + TSS region transcription start site region 76173
Tssr76174 8 10183313 to 10183334 21 + TSS region transcription start site region 76174
Tssr76175 8 10249189 to 10249200 11 + TSS region transcription start site region 76175
Cpgi20076 8 10249309 to 10249519 210 CpG island CpG island 20076
Tssr76176 8 10249334 to 10249366 32 + TSS region transcription start site region 76176
D8Mit285 8 10254729 to 10254814 85 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 285