Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:90962695-91972725

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chd9 8 90828357 to 91054516 226159 + protein coding gene chromodomain helicase DNA binding protein 9
Gm45363 8 91055264 to 91056557 1293 + unclassified gene predicted gene 45363
Gm39221 8 91059351 to 91061885 2534 + lncRNA gene predicted gene, 39221
Gm22428 8 91061265 to 91061396 131 - snoRNA gene predicted gene, 22428
Cpgi20807 8 91069913 to 91070622 709 CpG island CpG island 20807
Tssr78708 8 91070052 to 91070123 71 + TSS region transcription start site region 78708
Rbl2 8 91070057 to 91123844 53787 + protein coding gene RB transcriptional corepressor like 2
Tssr78709 8 91070139 to 91070151 12 + TSS region transcription start site region 78709
Tssr78710 8 91073779 to 91073790 11 + TSS region transcription start site region 78710
Tssr78711 8 91073973 to 91073994 21 + TSS region transcription start site region 78711
Tssr78712 8 91074072 to 91074080 8 + TSS region transcription start site region 78712
Tssr78713 8 91074085 to 91074105 20 + TSS region transcription start site region 78713
Tssr78714 8 91074200 to 91074229 29 + TSS region transcription start site region 78714
Tssr78715 8 91082169 to 91082189 20 + TSS region transcription start site region 78715
Tssr78716 8 91082241 to 91082270 29 + TSS region transcription start site region 78716
Tssr78717 8 91082459 to 91082486 27 + TSS region transcription start site region 78717
Tssr78718 8 91106389 to 91106414 25 + TSS region transcription start site region 78718
Tssr78719 8 91106521 to 91106545 24 + TSS region transcription start site region 78719
Tssr78720 8 91106554 to 91106561 7 + TSS region transcription start site region 78720
Tssr78721 8 91106563 to 91106595 32 + TSS region transcription start site region 78721
Aktip 8 91107639 to 91135494 27855 - protein coding gene thymoma viral proto-oncogene 1 interacting protein
Tssr78722 8 91112071 to 91112090 19 + TSS region transcription start site region 78722
Gm45464 8 91113762 to 91116671 2909 - sense intronic lncRNA gene predicted gene 45464
Tssr78723 8 91115716 to 91115727 11 + TSS region transcription start site region 78723
Tssr2641 8 91117654 to 91117659 5 - TSS region transcription start site region 2641
Tssr82404 8 91124024 to 91124028 4 - TSS region transcription start site region 82404
Cpgi20808 8 91133418 to 91134480 1062 CpG island CpG island 20808
Tssr82405 8 91133949 to 91134022 73 - TSS region transcription start site region 82405
Tssr82406 8 91134027 to 91134038 11 - TSS region transcription start site region 82406
Tssr82407 8 91135659 to 91135668 9 - TSS region transcription start site region 82407
Tssr82408 8 91135687 to 91135699 12 - TSS region transcription start site region 82408
Tssr82409 8 91135702 to 91135713 11 - TSS region transcription start site region 82409
Gm45665 8 91152207 to 91152374 167 + pseudogene predicted gene 45665
Gm8489 8 91157886 to 91158545 659 + pseudogene predicted gene 8489
Gm45666 8 91160516 to 91171180 10664 + antisense lncRNA gene predicted gene 45666
Gm23408 8 91184919 to 91185183 264 - unclassified non-coding RNA gene predicted gene, 23408
Cpgi20809 8 91190845 to 91191057 212 CpG island CpG island 20809
Gm36243 8 91210570 to 91224667 14097 + antisense lncRNA gene predicted gene, 36243
Rpgrip1l 8 91217030 to 91313262 96232 - protein coding gene Rpgrip1-like
Gm18603 8 91249617 to 91250142 525 - pseudogene predicted gene, 18603
Gm45662 8 91258438 to 91260535 2097 - unclassified gene predicted gene 45662
Gm36163 8 91273747 to 91300367 26620 + lncRNA gene predicted gene, 36163
Gm45428 8 91305967 to 91307755 1788 - unclassified gene predicted gene 45428
Cpgi20810 8 91312966 to 91313801 835 CpG island CpG island 20810
Tssr82410 8 91313223 to 91313279 56 - TSS region transcription start site region 82410
Tssr78724 8 91313245 to 91313246 1 + TSS region transcription start site region 78724
Tssr78725 8 91313280 to 91313293 13 + TSS region transcription start site region 78725
Tssr78726 8 91313301 to 91313306 5 + TSS region transcription start site region 78726
Tssr82411 8 91313376 to 91313388 12 - TSS region transcription start site region 82411
Tssr2642 8 91313432 to 91313463 31 + TSS region transcription start site region 2642
Fto 8 91313525 to 91668439 354914 + protein coding gene fat mass and obesity associated
Tssr78727 8 91313529 to 91313557 28 + TSS region transcription start site region 78727
Tssr78728 8 91313560 to 91313575 15 + TSS region transcription start site region 78728
Tssr78729 8 91313586 to 91313591 5 + TSS region transcription start site region 78729
Tssr78730 8 91318117 to 91318119 2 + TSS region transcription start site region 78730
Tssr78731 8 91363261 to 91363266 5 + TSS region transcription start site region 78731
B130011D17Rik 8 91365668 to 91367265 1597 unclassified gene RIKEN cDNA B130011D17 gene
Tssr78732 8 91384692 to 91384710 18 + TSS region transcription start site region 78732
Tssr78733 8 91387355 to 91387359 4 + TSS region transcription start site region 78733
Gm45427 8 91390693 to 91391945 1252 - unclassified gene predicted gene 45427
Hfhl2 8 91441742 to 91441742 0 QTL high-frequency hearing loss 2
Gm45292 8 91450306 to 91452512 2206 + unclassified gene predicted gene 45292
4831440D22Rik 8 91450612 to 91467685 17073 - antisense lncRNA gene RIKEN cDNA 4831440D22 gene
Tssr78734 8 91467695 to 91467725 30 + TSS region transcription start site region 78734
Gm45289 8 91493019 to 91495595 2576 + unclassified gene predicted gene 45289
Gm45290 8 91528835 to 91532724 3889 - unclassified gene predicted gene 45290
Gm45294 8 91579288 to 91581389 2101 + unclassified gene predicted gene 45294
Tssr78735 8 91619227 to 91619230 3 + TSS region transcription start site region 78735
Gm3235 8 91621448 to 91629729 8281 - antisense lncRNA gene predicted gene 3235
D8Mit196 8 91628533 to 91628620 87 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 196
Tssr82412 8 91629707 to 91629734 27 - TSS region transcription start site region 82412
Tssr78736 8 91631062 to 91631070 8 + TSS region transcription start site region 78736
Gm45293 8 91633079 to 91634890 1811 + unclassified gene predicted gene 45293
Tssr82413 8 91656708 to 91656720 12 - TSS region transcription start site region 82413
Gm45295 8 91670852 to 91671897 1045 - unclassified gene predicted gene 45295
Gm9619 8 91688374 to 91689135 761 - pseudogene predicted gene 9619
Gm2875 8 91689753 to 91690112 359 + pseudogene predicted gene 2875
Tssr82414 8 91708499 to 91708505 6 - TSS region transcription start site region 82414
Gm36325 8 91712698 to 91715184 2486 - lincRNA gene predicted gene, 36325
Cpgi20811 8 91712869 to 91713125 256 CpG island CpG island 20811
Tssr82415 8 91713328 to 91713350 22 - TSS region transcription start site region 82415
D8Mit309 8 91757909 to 91758024 115 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 309
Tssr2643 8 91759147 to 91759152 5 + TSS region transcription start site region 2643
Tssr78737 8 91759176 to 91759183 7 + TSS region transcription start site region 78737
Gm36380 8 91788514 to 91793790 5276 - lincRNA gene predicted gene, 36380
Gm39222 8 91795574 to 91797743 2169 - lncRNA gene predicted gene, 39222
Cpgi20812 8 91797651 to 91798067 416 CpG island CpG island 20812
Irx3 8 91798511 to 91801654 3143 - protein coding gene Iroquois related homeobox 3
Cpgi20813 8 91799330 to 91802515 3185 CpG island CpG island 20813
Tssr82416 8 91800281 to 91800294 13 - TSS region transcription start site region 82416
Tssr78738 8 91800406 to 91800429 23 + TSS region transcription start site region 78738
Tssr82417 8 91801374 to 91801389 15 - TSS region transcription start site region 82417
Tssr82418 8 91801422 to 91801467 45 - TSS region transcription start site region 82418
Tssr82419 8 91801475 to 91801486 11 - TSS region transcription start site region 82419
Tssr82420 8 91801547 to 91801560 13 - TSS region transcription start site region 82420
Tssr82421 8 91801587 to 91801611 24 - TSS region transcription start site region 82421
Tssr2644 8 91801617 to 91801637 20 - TSS region transcription start site region 2644
Tssr82422 8 91801880 to 91801892 12 - TSS region transcription start site region 82422
Tssr82423 8 91801900 to 91801914 14 - TSS region transcription start site region 82423
Tssr82424 8 91801915 to 91801940 25 - TSS region transcription start site region 82424
Tssr82425 8 91801948 to 91801970 22 - TSS region transcription start site region 82425
Irx3os 8 91804234 to 91807377 3143 + antisense lncRNA gene iroquois homeobox 3, opposite strand
Cpgi20814 8 91804307 to 91804796 489 CpG island CpG island 20814
Cpgi20815 8 91805272 to 91805751 479 CpG island CpG island 20815
Cpgi20816 8 91806244 to 91806719 475 CpG island CpG island 20816
Gm39223 8 91822584 to 91830637 8053 + lncRNA gene predicted gene, 39223
Gm28511 8 91865871 to 91872995 7124 + lincRNA gene predicted gene 28511
Cpgi20817 8 91872703 to 91872897 194 CpG island CpG island 20817
Gm28515 8 91907565 to 91913066 5501 - lincRNA gene predicted gene 28515
D8Mit147 8 91954072 to 91954211 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 147