Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:89692040-90903343

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Char2a 8 71136783 to 90202598 19065815 QTL P. chabaudi malaria resistance QTL 2a
Tssr78681 8 89776429 to 89776432 3 + TSS region transcription start site region 78681
Tssr82392 8 89824661 to 89824674 13 - TSS region transcription start site region 82392
Tssr78682 8 89995914 to 89995918 4 + TSS region transcription start site region 78682
D8Mit197 8 90024955 to 90025070 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 197
D8Mit308 8 90108164 to 90108272 108 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 308
Pitm3 8 90202495 to 90202598 103 QTL prion incubation time 3
D8Mit266 8 90202495 to 90202598 103 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 266
D8Mit107 8 90236541 to 90236690 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 107
Tox3 8 90247040 to 90348343 101303 - protein coding gene TOX high mobility group box family member 3
Tssr82393 8 90298404 to 90298409 5 - TSS region transcription start site region 82393
Tssr82394 8 90301362 to 90301366 4 - TSS region transcription start site region 82394
Tssr82395 8 90325926 to 90325938 12 - TSS region transcription start site region 82395
Tssr82396 8 90347194 to 90347201 7 - TSS region transcription start site region 82396
Cpgi20803 8 90347393 to 90348971 1578 CpG island CpG island 20803
Tssr2640 8 90348126 to 90348160 34 - TSS region transcription start site region 2640
Tssr82397 8 90348278 to 90348302 24 - TSS region transcription start site region 82397
Tssr82398 8 90348343 to 90348386 43 - TSS region transcription start site region 82398
Gm39219 8 90355284 to 90359600 4316 - lncRNA gene predicted gene, 39219
4930405E02Rik 8 90359702 to 90361757 2055 unclassified non-coding RNA gene RIKEN cDNA 4930405E02 gene
Gm46048 8 90417185 to 90420255 3070 - lncRNA gene predicted gene, 46048
Gm35797 8 90480943 to 90491058 10115 - lncRNA gene predicted gene, 35797
Tssr78683 8 90493055 to 90493066 11 + TSS region transcription start site region 78683
Tssr78684 8 90493097 to 90493100 3 + TSS region transcription start site region 78684
Tssr78685 8 90493104 to 90493116 12 + TSS region transcription start site region 78685
Tssr78686 8 90493125 to 90493131 6 + TSS region transcription start site region 78686
Gm39220 8 90520823 to 90535881 15058 - lncRNA gene predicted gene, 39220
Gm45639 8 90669805 to 90674958 5153 - lincRNA gene predicted gene 45639
Gm17996 8 90675240 to 90676203 963 - pseudogene predicted gene, 17996
Gm45638 8 90685186 to 90688063 2877 - unclassified gene predicted gene 45638
Gm35850 8 90709459 to 90740769 31310 - lincRNA gene predicted gene, 35850
Gm35963 8 90759463 to 90762596 3133 - lincRNA gene predicted gene, 35963
Gm44382 8 90790826 to 90790947 121 - miRNA gene predicted gene, 44382
Gm19935 8 90816145 to 90817393 1248 - lncRNA gene predicted gene, 19935
Tssr82399 8 90816990 to 90817017 27 - TSS region transcription start site region 82399
Tssr82400 8 90817031 to 90817045 14 - TSS region transcription start site region 82400
Tssr82401 8 90817059 to 90817079 20 - TSS region transcription start site region 82401
Tssr82402 8 90817082 to 90817091 9 - TSS region transcription start site region 82402
Tssr82403 8 90817395 to 90817402 7 - TSS region transcription start site region 82403
Tssr78687 8 90828305 to 90828336 31 + TSS region transcription start site region 78687
Chd9 8 90828357 to 91054516 226159 + protein coding gene chromodomain helicase DNA binding protein 9
Cpgi20804 8 90828600 to 90829150 550 CpG island CpG island 20804
Tssr78688 8 90828820 to 90828842 22 + TSS region transcription start site region 78688
Tssr78689 8 90828848 to 90828895 47 + TSS region transcription start site region 78689
Gm45641 8 90848034 to 90849846 1812 - antisense lncRNA gene predicted gene 45641
Tssr78690 8 90858080 to 90858086 6 + TSS region transcription start site region 78690
Tssr78691 8 90861954 to 90861957 3 + TSS region transcription start site region 78691
D8Mit310 8 90863290 to 90863381 91 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 310
Tssr78692 8 90876356 to 90876365 9 + TSS region transcription start site region 78692
Tssr78693 8 90876454 to 90876467 13 + TSS region transcription start site region 78693
Tssr78694 8 90876566 to 90876579 13 + TSS region transcription start site region 78694
Gm45640 8 90876581 to 90878476 1895 + unclassified gene predicted gene 45640
Tssr78695 8 90876600 to 90876635 35 + TSS region transcription start site region 78695
Tssr78696 8 90876637 to 90876669 32 + TSS region transcription start site region 78696
Cpgi20805 8 90877147 to 90877394 247 CpG island CpG island 20805
Tssr78697 8 90884056 to 90884084 28 + TSS region transcription start site region 78697
Gm45643 8 90893155 to 90894638 1483 + unclassified gene predicted gene 45643
Tssr78698 8 90896291 to 90896297 6 + TSS region transcription start site region 78698
Tssr78699 8 90900120 to 90900123 3 + TSS region transcription start site region 78699