Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:88981871-90401948

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Char2a 8 71136783 to 90202598 19065815 QTL P. chabaudi malaria resistance QTL 2a
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Tssr78676 8 89003852 to 89003863 11 + TSS region transcription start site region 78676
Cpgi20796 8 89006434 to 89006817 383 CpG island CpG island 20796
Tssr82368 8 89006612 to 89006623 11 - TSS region transcription start site region 82368
Tssr82369 8 89006640 to 89006654 14 - TSS region transcription start site region 82369
Tssr82370 8 89006659 to 89006670 11 - TSS region transcription start site region 82370
Tssr82371 8 89006671 to 89006680 9 - TSS region transcription start site region 82371
Tssr82372 8 89006697 to 89006711 14 - TSS region transcription start site region 82372
Tssr82373 8 89007279 to 89007321 42 - TSS region transcription start site region 82373
Tssr82374 8 89012450 to 89012463 13 - TSS region transcription start site region 82374
Tssr78677 8 89012617 to 89012655 38 + TSS region transcription start site region 78677
Tssr82375 8 89015615 to 89015630 15 - TSS region transcription start site region 82375
Tssr82376 8 89015650 to 89015664 14 - TSS region transcription start site region 82376
Tssr82377 8 89015668 to 89015690 22 - TSS region transcription start site region 82377
Tssr78678 8 89015848 to 89015858 10 + TSS region transcription start site region 78678
Mir8110 8 89024735 to 89024831 96 + miRNA gene microRNA 8110
Cpgi20797 8 89025439 to 89026320 881 CpG island CpG island 20797
Tssr82378 8 89025995 to 89026010 15 - TSS region transcription start site region 82378
Sall1 8 89027239 to 89044162 16923 - protein coding gene spalt like transcription factor 1
Tssr82379 8 89033369 to 89033385 16 - TSS region transcription start site region 82379
Gm3134 8 89039976 to 89071021 31045 + lncRNA gene predicted gene 3134
Cpgi20798 8 89040877 to 89044431 3554 CpG island CpG island 20798
Tssr78679 8 89041688 to 89041714 26 + TSS region transcription start site region 78679
Tssr82380 8 89042423 to 89042435 12 - TSS region transcription start site region 82380
Tssr82381 8 89042447 to 89042469 22 - TSS region transcription start site region 82381
Tssr82382 8 89042591 to 89042620 29 - TSS region transcription start site region 82382
Tssr82383 8 89042635 to 89042655 20 - TSS region transcription start site region 82383
Tssr82384 8 89042760 to 89042774 14 - TSS region transcription start site region 82384
Tssr82385 8 89042784 to 89042798 14 - TSS region transcription start site region 82385
Tssr82386 8 89042815 to 89042829 14 - TSS region transcription start site region 82386
Tssr82387 8 89042843 to 89042869 26 - TSS region transcription start site region 82387
Tssr82388 8 89043491 to 89043517 26 - TSS region transcription start site region 82388
Tssr82389 8 89044175 to 89044195 20 - TSS region transcription start site region 82389
Cpgi20799 8 89045203 to 89045991 788 CpG island CpG island 20799
Gm46047 8 89045693 to 89052979 7286 - lncRNA gene predicted gene, 46047
Cpgi20800 8 89046323 to 89046568 245 CpG island CpG island 20800
Tssr82390 8 89053006 to 89053037 31 - TSS region transcription start site region 82390
Tssr78680 8 89053202 to 89053252 50 + TSS region transcription start site region 78680
Gm35358 8 89085418 to 89130837 45419 - lncRNA gene predicted gene, 35358
Tssr2636 8 89130328 to 89130346 18 + TSS region transcription start site region 2636
Tssr2637 8 89130943 to 89130944 1 + TSS region transcription start site region 2637
Gm35305 8 89137153 to 89142424 5271 + lncRNA gene predicted gene, 35305
Gm6625 8 89146787 to 89147058 271 - pseudogene predicted gene 6625
Tssr82391 8 89147248 to 89147251 3 - TSS region transcription start site region 82391
Gm5356 8 89186946 to 89187560 614 - pseudogene predicted pseudogene 5356
D8Mit81 8 89203615 to 89203750 135 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 81
Gm35542 8 89219478 to 89230325 10847 + lncRNA gene predicted gene, 35542
Cpgi20801 8 89272345 to 89272821 476 CpG island CpG island 20801
D8Mit50 8 89351668 to 89351811 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 50
Tssr2638 8 89427219 to 89427246 27 + TSS region transcription start site region 2638
Gm35593 8 89427227 to 89462515 35288 + lncRNA gene predicted gene, 35593
Cpgi20802 8 89571948 to 89572114 166 CpG island CpG island 20802
Tssr2639 8 89580206 to 89580209 3 + TSS region transcription start site region 2639
Gm26331 8 89589435 to 89589541 106 - snRNA gene predicted gene, 26331
Gm24212 8 89667173 to 89667304 131 - snoRNA gene predicted gene, 24212
D8Mit307 8 89691871 to 89691948 77 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 307
Tssr78681 8 89776429 to 89776432 3 + TSS region transcription start site region 78681
Tssr82392 8 89824661 to 89824674 13 - TSS region transcription start site region 82392
Tssr78682 8 89995914 to 89995918 4 + TSS region transcription start site region 78682
D8Mit197 8 90024955 to 90025070 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 197
D8Mit308 8 90108164 to 90108272 108 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 308
D8Mit266 8 90202495 to 90202598 103 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 266
Pitm3 8 90202495 to 90202598 103 QTL prion incubation time 3
D8Mit107 8 90236541 to 90236690 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 107
Tox3 8 90247040 to 90348343 101303 - protein coding gene TOX high mobility group box family member 3
Tssr82393 8 90298404 to 90298409 5 - TSS region transcription start site region 82393
Tssr82394 8 90301362 to 90301366 4 - TSS region transcription start site region 82394
Tssr82395 8 90325926 to 90325938 12 - TSS region transcription start site region 82395
Tssr82396 8 90347194 to 90347201 7 - TSS region transcription start site region 82396
Cpgi20803 8 90347393 to 90348971 1578 CpG island CpG island 20803
Tssr2640 8 90348126 to 90348160 34 - TSS region transcription start site region 2640
Tssr82397 8 90348278 to 90348302 24 - TSS region transcription start site region 82397
Tssr82398 8 90348343 to 90348386 43 - TSS region transcription start site region 82398
Gm39219 8 90355284 to 90359600 4316 - lncRNA gene predicted gene, 39219
4930405E02Rik 8 90359702 to 90361757 2055 unclassified non-coding RNA gene RIKEN cDNA 4930405E02 gene