Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:88435914-91555918

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252 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Char2a 8 71136783 to 90202598 19065815 QTL P. chabaudi malaria resistance QTL 2a
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Cpgi20786 8 88451032 to 88451271 239 CpG island CpG island 20786
Cpgi20787 8 88453845 to 88455192 1347 CpG island CpG island 20787
Tssr82355 8 88454401 to 88454409 8 - TSS region transcription start site region 82355
Cpgi20788 8 88455357 to 88455777 420 CpG island CpG island 20788
Gm34846 8 88480006 to 88485050 5044 + lncRNA gene predicted gene, 34846
Gm35076 8 88512558 to 88519485 6927 + lncRNA gene predicted gene, 35076
Gm35162 8 88519575 to 88521220 1645 - lncRNA gene predicted gene, 35162
Cpgi20789 8 88520825 to 88522455 1630 CpG island CpG island 20789
Tssr82356 8 88521100 to 88521146 46 - TSS region transcription start site region 82356
Tssr78654 8 88521248 to 88521280 32 + TSS region transcription start site region 78654
Tssr78655 8 88521348 to 88521371 23 + TSS region transcription start site region 78655
Nkd1 8 88521354 to 88594884 73530 + protein coding gene naked cuticle 1
D8Mit365 8 88523383 to 88523551 168 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-365
Gm45496 8 88560033 to 88562949 2916 + unclassified gene predicted gene 45496
Tssr78656 8 88577545 to 88577549 4 + TSS region transcription start site region 78656
Tssr78657 8 88582780 to 88582782 2 + TSS region transcription start site region 78657
Tssr78658 8 88583196 to 88583204 8 + TSS region transcription start site region 78658
Snx20 8 88626563 to 88636128 9565 - protein coding gene sorting nexin 20
Cpgi20790 8 88626937 to 88628104 1167 CpG island CpG island 20790
Tssr82357 8 88635976 to 88635987 11 - TSS region transcription start site region 82357
Tssr82358 8 88636059 to 88636116 57 - TSS region transcription start site region 82358
Tssr82359 8 88636117 to 88636132 15 - TSS region transcription start site region 82359
Tssr82360 8 88636152 to 88636163 11 - TSS region transcription start site region 82360
Cpgi20791 8 88647295 to 88647644 349 CpG island CpG island 20791
Nod2 8 88647315 to 88688474 41159 + protein coding gene nucleotide-binding oligomerization domain containing 2
Tssr78659 8 88647336 to 88647391 55 + TSS region transcription start site region 78659
Tssr82361 8 88650123 to 88650139 16 - TSS region transcription start site region 82361
Tssr78660 8 88650535 to 88650546 11 + TSS region transcription start site region 78660
Tssr82362 8 88654198 to 88654201 3 - TSS region transcription start site region 82362
Tssr78661 8 88658021 to 88658048 27 + TSS region transcription start site region 78661
Tssr78662 8 88658075 to 88658098 23 + TSS region transcription start site region 78662
Tssr78663 8 88660009 to 88660027 18 + TSS region transcription start site region 78663
Tssr82363 8 88662361 to 88662364 3 - TSS region transcription start site region 82363
Tssr82364 8 88662373 to 88662384 11 - TSS region transcription start site region 82364
Tssr78664 8 88662551 to 88662578 27 + TSS region transcription start site region 78664
Tssr82365 8 88664279 to 88664290 11 - TSS region transcription start site region 82365
Tssr82366 8 88664291 to 88664314 23 - TSS region transcription start site region 82366
Cpgi20792 8 88665022 to 88665386 364 CpG island CpG island 20792
Tssr78665 8 88678994 to 88679000 6 + TSS region transcription start site region 78665
Tssr78666 8 88680940 to 88680943 3 + TSS region transcription start site region 78666
Tssr78667 8 88693466 to 88693472 6 + TSS region transcription start site region 78667
Cpgi20793 8 88696582 to 88697669 1087 CpG island CpG island 20793
Tssr78668 8 88697022 to 88697033 11 + TSS region transcription start site region 78668
Cyld 8 88697028 to 88751945 54917 + protein coding gene CYLD lysine 63 deubiquitinase
Tssr78669 8 88697038 to 88697077 39 + TSS region transcription start site region 78669
Tssr78670 8 88697084 to 88697108 24 + TSS region transcription start site region 78670
Tssr78671 8 88697118 to 88697138 20 + TSS region transcription start site region 78671
Tssr78672 8 88697308 to 88697393 85 + TSS region transcription start site region 78672
Gm17995 8 88721079 to 88721608 529 - pseudogene predicted gene, 17995
Gm17910 8 88728203 to 88729040 837 - pseudogene predicted gene, 17910
Cpgi20794 8 88757677 to 88757861 184 CpG island CpG island 20794
Rps6-ps2 8 88806391 to 88807137 746 + pseudogene ribosomal protein S6, pseudogene 2
D8Mit207 8 88808876 to 88809010 134 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 207
Gm42034 8 88840301 to 88848306 8005 + lncRNA gene predicted gene, 42034
Gm45504 8 88860968 to 88863074 2106 - unclassified gene predicted gene 45504
Tssr82367 8 88949981 to 88949994 13 - TSS region transcription start site region 82367
Tssr78673 8 88950234 to 88950249 15 + TSS region transcription start site region 78673
Tssr78674 8 88950251 to 88950278 27 + TSS region transcription start site region 78674
Cpgi20795 8 88950436 to 88950900 464 CpG island CpG island 20795
Tssr78675 8 88951729 to 88951779 50 + TSS region transcription start site region 78675
Tssr78676 8 89003852 to 89003863 11 + TSS region transcription start site region 78676
Cpgi20796 8 89006434 to 89006817 383 CpG island CpG island 20796
Tssr82368 8 89006612 to 89006623 11 - TSS region transcription start site region 82368
Tssr82369 8 89006640 to 89006654 14 - TSS region transcription start site region 82369
Tssr82370 8 89006659 to 89006670 11 - TSS region transcription start site region 82370
Tssr82371 8 89006671 to 89006680 9 - TSS region transcription start site region 82371
Tssr82372 8 89006697 to 89006711 14 - TSS region transcription start site region 82372
Tssr82373 8 89007279 to 89007321 42 - TSS region transcription start site region 82373
Tssr82374 8 89012450 to 89012463 13 - TSS region transcription start site region 82374
Tssr78677 8 89012617 to 89012655 38 + TSS region transcription start site region 78677
Tssr82375 8 89015615 to 89015630 15 - TSS region transcription start site region 82375
Tssr82376 8 89015650 to 89015664 14 - TSS region transcription start site region 82376
Tssr82377 8 89015668 to 89015690 22 - TSS region transcription start site region 82377
Tssr78678 8 89015848 to 89015858 10 + TSS region transcription start site region 78678
Mir8110 8 89024735 to 89024831 96 + miRNA gene microRNA 8110
Cpgi20797 8 89025439 to 89026320 881 CpG island CpG island 20797
Tssr82378 8 89025995 to 89026010 15 - TSS region transcription start site region 82378
Sall1 8 89027239 to 89044162 16923 - protein coding gene spalt like transcription factor 1
Tssr82379 8 89033369 to 89033385 16 - TSS region transcription start site region 82379
Gm3134 8 89039976 to 89071021 31045 + lncRNA gene predicted gene 3134
Cpgi20798 8 89040877 to 89044431 3554 CpG island CpG island 20798
Tssr78679 8 89041688 to 89041714 26 + TSS region transcription start site region 78679
Tssr82380 8 89042423 to 89042435 12 - TSS region transcription start site region 82380
Tssr82381 8 89042447 to 89042469 22 - TSS region transcription start site region 82381
Tssr82382 8 89042591 to 89042620 29 - TSS region transcription start site region 82382
Tssr82383 8 89042635 to 89042655 20 - TSS region transcription start site region 82383
Tssr82384 8 89042760 to 89042774 14 - TSS region transcription start site region 82384
Tssr82385 8 89042784 to 89042798 14 - TSS region transcription start site region 82385
Tssr82386 8 89042815 to 89042829 14 - TSS region transcription start site region 82386
Tssr82387 8 89042843 to 89042869 26 - TSS region transcription start site region 82387
Tssr82388 8 89043491 to 89043517 26 - TSS region transcription start site region 82388
Tssr82389 8 89044175 to 89044195 20 - TSS region transcription start site region 82389
Cpgi20799 8 89045203 to 89045991 788 CpG island CpG island 20799
Gm46047 8 89045693 to 89052979 7286 - lncRNA gene predicted gene, 46047
Cpgi20800 8 89046323 to 89046568 245 CpG island CpG island 20800
Tssr82390 8 89053006 to 89053037 31 - TSS region transcription start site region 82390
Tssr78680 8 89053202 to 89053252 50 + TSS region transcription start site region 78680
Gm35358 8 89085418 to 89130837 45419 - lncRNA gene predicted gene, 35358
Tssr2636 8 89130328 to 89130346 18 + TSS region transcription start site region 2636
Tssr2637 8 89130943 to 89130944 1 + TSS region transcription start site region 2637
Gm35305 8 89137153 to 89142424 5271 + lncRNA gene predicted gene, 35305
Gm6625 8 89146787 to 89147058 271 - pseudogene predicted gene 6625
Tssr82391 8 89147248 to 89147251 3 - TSS region transcription start site region 82391
Gm5356 8 89186946 to 89187560 614 - pseudogene predicted pseudogene 5356
D8Mit81 8 89203615 to 89203750 135 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 81
Gm35542 8 89219478 to 89230325 10847 + lncRNA gene predicted gene, 35542
Cpgi20801 8 89272345 to 89272821 476 CpG island CpG island 20801
D8Mit50 8 89351668 to 89351811 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 50
Tssr2638 8 89427219 to 89427246 27 + TSS region transcription start site region 2638
Gm35593 8 89427227 to 89462515 35288 + lncRNA gene predicted gene, 35593
Cpgi20802 8 89571948 to 89572114 166 CpG island CpG island 20802
Tssr2639 8 89580206 to 89580209 3 + TSS region transcription start site region 2639
Gm26331 8 89589435 to 89589541 106 - snRNA gene predicted gene, 26331
Gm24212 8 89667173 to 89667304 131 - snoRNA gene predicted gene, 24212
D8Mit307 8 89691871 to 89691948 77 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 307
Tssr78681 8 89776429 to 89776432 3 + TSS region transcription start site region 78681
Tssr82392 8 89824661 to 89824674 13 - TSS region transcription start site region 82392
Tssr78682 8 89995914 to 89995918 4 + TSS region transcription start site region 78682
D8Mit197 8 90024955 to 90025070 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 197
D8Mit308 8 90108164 to 90108272 108 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 308
D8Mit266 8 90202495 to 90202598 103 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 266
Pitm3 8 90202495 to 90202598 103 QTL prion incubation time 3
D8Mit107 8 90236541 to 90236690 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 107
Tox3 8 90247040 to 90348343 101303 - protein coding gene TOX high mobility group box family member 3
Tssr82393 8 90298404 to 90298409 5 - TSS region transcription start site region 82393
Tssr82394 8 90301362 to 90301366 4 - TSS region transcription start site region 82394
Tssr82395 8 90325926 to 90325938 12 - TSS region transcription start site region 82395
Tssr82396 8 90347194 to 90347201 7 - TSS region transcription start site region 82396
Cpgi20803 8 90347393 to 90348971 1578 CpG island CpG island 20803
Tssr2640 8 90348126 to 90348160 34 - TSS region transcription start site region 2640
Tssr82397 8 90348278 to 90348302 24 - TSS region transcription start site region 82397
Tssr82398 8 90348343 to 90348386 43 - TSS region transcription start site region 82398
Gm39219 8 90355284 to 90359600 4316 - lncRNA gene predicted gene, 39219
4930405E02Rik 8 90359702 to 90361757 2055 unclassified non-coding RNA gene RIKEN cDNA 4930405E02 gene
Gm46048 8 90417185 to 90420255 3070 - lncRNA gene predicted gene, 46048
Gm35797 8 90480943 to 90491058 10115 - lncRNA gene predicted gene, 35797
Tssr78683 8 90493055 to 90493066 11 + TSS region transcription start site region 78683
Tssr78684 8 90493097 to 90493100 3 + TSS region transcription start site region 78684
Tssr78685 8 90493104 to 90493116 12 + TSS region transcription start site region 78685
Tssr78686 8 90493125 to 90493131 6 + TSS region transcription start site region 78686
Gm39220 8 90520823 to 90535881 15058 - lncRNA gene predicted gene, 39220
Gm45639 8 90669805 to 90674958 5153 - lincRNA gene predicted gene 45639
Gm17996 8 90675240 to 90676203 963 - pseudogene predicted gene, 17996
Gm45638 8 90685186 to 90688063 2877 - unclassified gene predicted gene 45638
Gm35850 8 90709459 to 90740769 31310 - lincRNA gene predicted gene, 35850
Gm35963 8 90759463 to 90762596 3133 - lincRNA gene predicted gene, 35963
Gm44382 8 90790826 to 90790947 121 - miRNA gene predicted gene, 44382
Gm19935 8 90816145 to 90817393 1248 - lncRNA gene predicted gene, 19935
Tssr82399 8 90816990 to 90817017 27 - TSS region transcription start site region 82399
Tssr82400 8 90817031 to 90817045 14 - TSS region transcription start site region 82400
Tssr82401 8 90817059 to 90817079 20 - TSS region transcription start site region 82401
Tssr82402 8 90817082 to 90817091 9 - TSS region transcription start site region 82402
Tssr82403 8 90817395 to 90817402 7 - TSS region transcription start site region 82403
Tssr78687 8 90828305 to 90828336 31 + TSS region transcription start site region 78687
Chd9 8 90828357 to 91054516 226159 + protein coding gene chromodomain helicase DNA binding protein 9
Cpgi20804 8 90828600 to 90829150 550 CpG island CpG island 20804
Tssr78688 8 90828820 to 90828842 22 + TSS region transcription start site region 78688
Tssr78689 8 90828848 to 90828895 47 + TSS region transcription start site region 78689
Gm45641 8 90848034 to 90849846 1812 - antisense lncRNA gene predicted gene 45641
Tssr78690 8 90858080 to 90858086 6 + TSS region transcription start site region 78690
Tssr78691 8 90861954 to 90861957 3 + TSS region transcription start site region 78691
D8Mit310 8 90863290 to 90863381 91 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 310
Tssr78692 8 90876356 to 90876365 9 + TSS region transcription start site region 78692
Tssr78693 8 90876454 to 90876467 13 + TSS region transcription start site region 78693
Tssr78694 8 90876566 to 90876579 13 + TSS region transcription start site region 78694
Gm45640 8 90876581 to 90878476 1895 + unclassified gene predicted gene 45640
Tssr78695 8 90876600 to 90876635 35 + TSS region transcription start site region 78695
Tssr78696 8 90876637 to 90876669 32 + TSS region transcription start site region 78696
Cpgi20805 8 90877147 to 90877394 247 CpG island CpG island 20805
Tssr78697 8 90884056 to 90884084 28 + TSS region transcription start site region 78697
Gm45643 8 90893155 to 90894638 1483 + unclassified gene predicted gene 45643
Tssr78698 8 90896291 to 90896297 6 + TSS region transcription start site region 78698
Tssr78699 8 90900120 to 90900123 3 + TSS region transcription start site region 78699
D8Mit251 8 90905517 to 90905638 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 251
Fts 8 90905517 to 92728652 1823135 heritable phenotypic marker fused toes
Gm6658 8 90906532 to 90908416 1884 - protein coding gene predicted gene 6658
Cpgi20806 8 90907675 to 90909513 1838 CpG island CpG island 20806
Tssr78700 8 90908565 to 90908597 32 + TSS region transcription start site region 78700
Tssr78701 8 90908599 to 90908619 20 + TSS region transcription start site region 78701
Tssr78702 8 90935239 to 90935245 6 + TSS region transcription start site region 78702
Tssr78703 8 90954923 to 90955059 136 + TSS region transcription start site region 78703
Tssr78704 8 90955079 to 90955096 17 + TSS region transcription start site region 78704
Tssr78705 8 90955398 to 90955415 17 + TSS region transcription start site region 78705
Tssr78706 8 90955418 to 90955488 70 + TSS region transcription start site region 78706
Tssr78707 8 90955509 to 90955519 10 + TSS region transcription start site region 78707
Gm45363 8 91055264 to 91056557 1293 + unclassified gene predicted gene 45363
Gm39221 8 91059351 to 91061885 2534 + lncRNA gene predicted gene, 39221
Gm22428 8 91061265 to 91061396 131 - snoRNA gene predicted gene, 22428
Cpgi20807 8 91069913 to 91070622 709 CpG island CpG island 20807
Tssr78708 8 91070052 to 91070123 71 + TSS region transcription start site region 78708
Rbl2 8 91070057 to 91123844 53787 + protein coding gene RB transcriptional corepressor like 2
Tssr78709 8 91070139 to 91070151 12 + TSS region transcription start site region 78709
Tssr78710 8 91073779 to 91073790 11 + TSS region transcription start site region 78710
Tssr78711 8 91073973 to 91073994 21 + TSS region transcription start site region 78711
Tssr78712 8 91074072 to 91074080 8 + TSS region transcription start site region 78712
Tssr78713 8 91074085 to 91074105 20 + TSS region transcription start site region 78713
Tssr78714 8 91074200 to 91074229 29 + TSS region transcription start site region 78714
Tssr78715 8 91082169 to 91082189 20 + TSS region transcription start site region 78715