Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:88381100-88661146

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34751 8 88381590 to 88389037 7447 - lncRNA gene predicted gene, 34751
Tssr82354 8 88388757 to 88388767 10 - TSS region transcription start site region 82354
Gm45497 8 88391121 to 88392228 1107 + pseudogene predicted gene 45497
D8Mit51 8 88396181 to 88396393 212 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 51
Cd4ts3 8 88396181 to 88396393 212 QTL CD4 T cell subset 3
Gm39218 8 88417460 to 88428840 11380 + lncRNA gene predicted gene, 39218
Tssr78650 8 88428731 to 88428740 9 + TSS region transcription start site region 78650
Tssr78651 8 88428778 to 88428790 12 + TSS region transcription start site region 78651
Tssr78652 8 88428810 to 88428823 13 + TSS region transcription start site region 78652
Tssr78653 8 88428876 to 88428901 25 + TSS region transcription start site region 78653
Cpgi20786 8 88451032 to 88451271 239 CpG island CpG island 20786
Cpgi20787 8 88453845 to 88455192 1347 CpG island CpG island 20787
Tssr82355 8 88454401 to 88454409 8 - TSS region transcription start site region 82355
Cpgi20788 8 88455357 to 88455777 420 CpG island CpG island 20788
Gm34846 8 88480006 to 88485050 5044 + lncRNA gene predicted gene, 34846
Gm35076 8 88512558 to 88519485 6927 + lncRNA gene predicted gene, 35076
Gm35162 8 88519575 to 88521220 1645 - lncRNA gene predicted gene, 35162
Cpgi20789 8 88520825 to 88522455 1630 CpG island CpG island 20789
Tssr82356 8 88521100 to 88521146 46 - TSS region transcription start site region 82356
Tssr78654 8 88521248 to 88521280 32 + TSS region transcription start site region 78654
Tssr78655 8 88521348 to 88521371 23 + TSS region transcription start site region 78655
Nkd1 8 88521354 to 88594884 73530 + protein coding gene naked cuticle 1
D8Mit365 8 88523383 to 88523551 168 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-365
Gm45496 8 88560033 to 88562949 2916 + unclassified gene predicted gene 45496
Tssr78656 8 88577545 to 88577549 4 + TSS region transcription start site region 78656
Tssr78657 8 88582780 to 88582782 2 + TSS region transcription start site region 78657
Tssr78658 8 88583196 to 88583204 8 + TSS region transcription start site region 78658
Snx20 8 88626563 to 88636128 9565 - protein coding gene sorting nexin 20
Cpgi20790 8 88626937 to 88628104 1167 CpG island CpG island 20790
Tssr82357 8 88635976 to 88635987 11 - TSS region transcription start site region 82357
Tssr82358 8 88636059 to 88636116 57 - TSS region transcription start site region 82358
Tssr82359 8 88636117 to 88636132 15 - TSS region transcription start site region 82359
Tssr82360 8 88636152 to 88636163 11 - TSS region transcription start site region 82360
Cpgi20791 8 88647295 to 88647644 349 CpG island CpG island 20791
Nod2 8 88647315 to 88688474 41159 + protein coding gene nucleotide-binding oligomerization domain containing 2
Tssr78659 8 88647336 to 88647391 55 + TSS region transcription start site region 78659
Tssr82361 8 88650123 to 88650139 16 - TSS region transcription start site region 82361
Tssr78660 8 88650535 to 88650546 11 + TSS region transcription start site region 78660
Tssr82362 8 88654198 to 88654201 3 - TSS region transcription start site region 82362
Tssr78661 8 88658021 to 88658048 27 + TSS region transcription start site region 78661
Tssr78662 8 88658075 to 88658098 23 + TSS region transcription start site region 78662
Tssr78663 8 88660009 to 88660027 18 + TSS region transcription start site region 78663