Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:88371787-89922058

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Gm34751 8 88381590 to 88389037 7447 - lncRNA gene predicted gene, 34751
Tssr82354 8 88388757 to 88388767 10 - TSS region transcription start site region 82354
Gm45497 8 88391121 to 88392228 1107 + pseudogene predicted gene 45497
D8Mit51 8 88396181 to 88396393 212 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 51
Cd4ts3 8 88396181 to 88396393 212 QTL CD4 T cell subset 3
Gm39218 8 88417460 to 88428840 11380 + lncRNA gene predicted gene, 39218
Tssr78650 8 88428731 to 88428740 9 + TSS region transcription start site region 78650
Tssr78651 8 88428778 to 88428790 12 + TSS region transcription start site region 78651
Tssr78652 8 88428810 to 88428823 13 + TSS region transcription start site region 78652
Tssr78653 8 88428876 to 88428901 25 + TSS region transcription start site region 78653
Cpgi20786 8 88451032 to 88451271 239 CpG island CpG island 20786
Cpgi20787 8 88453845 to 88455192 1347 CpG island CpG island 20787
Tssr82355 8 88454401 to 88454409 8 - TSS region transcription start site region 82355
Cpgi20788 8 88455357 to 88455777 420 CpG island CpG island 20788
Gm34846 8 88480006 to 88485050 5044 + lncRNA gene predicted gene, 34846
Gm35076 8 88512558 to 88519485 6927 + lncRNA gene predicted gene, 35076
Gm35162 8 88519575 to 88521220 1645 - lncRNA gene predicted gene, 35162
Cpgi20789 8 88520825 to 88522455 1630 CpG island CpG island 20789
Tssr82356 8 88521100 to 88521146 46 - TSS region transcription start site region 82356
Tssr78654 8 88521248 to 88521280 32 + TSS region transcription start site region 78654
Tssr78655 8 88521348 to 88521371 23 + TSS region transcription start site region 78655
Nkd1 8 88521354 to 88594884 73530 + protein coding gene naked cuticle 1
D8Mit365 8 88523383 to 88523551 168 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-365
Gm45496 8 88560033 to 88562949 2916 + unclassified gene predicted gene 45496
Tssr78656 8 88577545 to 88577549 4 + TSS region transcription start site region 78656
Tssr78657 8 88582780 to 88582782 2 + TSS region transcription start site region 78657
Tssr78658 8 88583196 to 88583204 8 + TSS region transcription start site region 78658
Snx20 8 88626563 to 88636128 9565 - protein coding gene sorting nexin 20
Cpgi20790 8 88626937 to 88628104 1167 CpG island CpG island 20790
Tssr82357 8 88635976 to 88635987 11 - TSS region transcription start site region 82357
Tssr82358 8 88636059 to 88636116 57 - TSS region transcription start site region 82358
Tssr82359 8 88636117 to 88636132 15 - TSS region transcription start site region 82359
Tssr82360 8 88636152 to 88636163 11 - TSS region transcription start site region 82360
Cpgi20791 8 88647295 to 88647644 349 CpG island CpG island 20791
Nod2 8 88647315 to 88688474 41159 + protein coding gene nucleotide-binding oligomerization domain containing 2
Tssr78659 8 88647336 to 88647391 55 + TSS region transcription start site region 78659
Tssr82361 8 88650123 to 88650139 16 - TSS region transcription start site region 82361
Tssr78660 8 88650535 to 88650546 11 + TSS region transcription start site region 78660
Tssr82362 8 88654198 to 88654201 3 - TSS region transcription start site region 82362
Tssr78661 8 88658021 to 88658048 27 + TSS region transcription start site region 78661
Tssr78662 8 88658075 to 88658098 23 + TSS region transcription start site region 78662
Tssr78663 8 88660009 to 88660027 18 + TSS region transcription start site region 78663
Tssr82363 8 88662361 to 88662364 3 - TSS region transcription start site region 82363
Tssr82364 8 88662373 to 88662384 11 - TSS region transcription start site region 82364
Tssr78664 8 88662551 to 88662578 27 + TSS region transcription start site region 78664
Tssr82365 8 88664279 to 88664290 11 - TSS region transcription start site region 82365
Tssr82366 8 88664291 to 88664314 23 - TSS region transcription start site region 82366
Cpgi20792 8 88665022 to 88665386 364 CpG island CpG island 20792
Tssr78665 8 88678994 to 88679000 6 + TSS region transcription start site region 78665
Tssr78666 8 88680940 to 88680943 3 + TSS region transcription start site region 78666
Tssr78667 8 88693466 to 88693472 6 + TSS region transcription start site region 78667
Cpgi20793 8 88696582 to 88697669 1087 CpG island CpG island 20793
Tssr78668 8 88697022 to 88697033 11 + TSS region transcription start site region 78668
Cyld 8 88697028 to 88751945 54917 + protein coding gene CYLD lysine 63 deubiquitinase
Tssr78669 8 88697038 to 88697077 39 + TSS region transcription start site region 78669
Tssr78670 8 88697084 to 88697108 24 + TSS region transcription start site region 78670
Tssr78671 8 88697118 to 88697138 20 + TSS region transcription start site region 78671
Tssr78672 8 88697308 to 88697393 85 + TSS region transcription start site region 78672
Gm17995 8 88721079 to 88721608 529 - pseudogene predicted gene, 17995
Gm17910 8 88728203 to 88729040 837 - pseudogene predicted gene, 17910
Cpgi20794 8 88757677 to 88757861 184 CpG island CpG island 20794
Rps6-ps2 8 88806391 to 88807137 746 + pseudogene ribosomal protein S6, pseudogene 2
D8Mit207 8 88808876 to 88809010 134 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 207
Gm42034 8 88840301 to 88848306 8005 + lncRNA gene predicted gene, 42034
Gm45504 8 88860968 to 88863074 2106 - unclassified gene predicted gene 45504
Tssr82367 8 88949981 to 88949994 13 - TSS region transcription start site region 82367
Tssr78673 8 88950234 to 88950249 15 + TSS region transcription start site region 78673
Tssr78674 8 88950251 to 88950278 27 + TSS region transcription start site region 78674
Cpgi20795 8 88950436 to 88950900 464 CpG island CpG island 20795
Tssr78675 8 88951729 to 88951779 50 + TSS region transcription start site region 78675
Tssr78676 8 89003852 to 89003863 11 + TSS region transcription start site region 78676
Cpgi20796 8 89006434 to 89006817 383 CpG island CpG island 20796
Tssr82368 8 89006612 to 89006623 11 - TSS region transcription start site region 82368
Tssr82369 8 89006640 to 89006654 14 - TSS region transcription start site region 82369
Tssr82370 8 89006659 to 89006670 11 - TSS region transcription start site region 82370
Tssr82371 8 89006671 to 89006680 9 - TSS region transcription start site region 82371
Tssr82372 8 89006697 to 89006711 14 - TSS region transcription start site region 82372
Tssr82373 8 89007279 to 89007321 42 - TSS region transcription start site region 82373
Tssr82374 8 89012450 to 89012463 13 - TSS region transcription start site region 82374
Tssr78677 8 89012617 to 89012655 38 + TSS region transcription start site region 78677
Tssr82375 8 89015615 to 89015630 15 - TSS region transcription start site region 82375
Tssr82376 8 89015650 to 89015664 14 - TSS region transcription start site region 82376
Tssr82377 8 89015668 to 89015690 22 - TSS region transcription start site region 82377
Tssr78678 8 89015848 to 89015858 10 + TSS region transcription start site region 78678
Mir8110 8 89024735 to 89024831 96 + miRNA gene microRNA 8110
Cpgi20797 8 89025439 to 89026320 881 CpG island CpG island 20797
Tssr82378 8 89025995 to 89026010 15 - TSS region transcription start site region 82378
Sall1 8 89027239 to 89044162 16923 - protein coding gene spalt like transcription factor 1
Tssr82379 8 89033369 to 89033385 16 - TSS region transcription start site region 82379
Gm3134 8 89039976 to 89071021 31045 + lncRNA gene predicted gene 3134
Cpgi20798 8 89040877 to 89044431 3554 CpG island CpG island 20798
Tssr78679 8 89041688 to 89041714 26 + TSS region transcription start site region 78679
Tssr82380 8 89042423 to 89042435 12 - TSS region transcription start site region 82380
Tssr82381 8 89042447 to 89042469 22 - TSS region transcription start site region 82381
Tssr82382 8 89042591 to 89042620 29 - TSS region transcription start site region 82382
Tssr82383 8 89042635 to 89042655 20 - TSS region transcription start site region 82383
Tssr82384 8 89042760 to 89042774 14 - TSS region transcription start site region 82384
Tssr82385 8 89042784 to 89042798 14 - TSS region transcription start site region 82385
Tssr82386 8 89042815 to 89042829 14 - TSS region transcription start site region 82386
Tssr82387 8 89042843 to 89042869 26 - TSS region transcription start site region 82387
Tssr82388 8 89043491 to 89043517 26 - TSS region transcription start site region 82388
Tssr82389 8 89044175 to 89044195 20 - TSS region transcription start site region 82389
Cpgi20799 8 89045203 to 89045991 788 CpG island CpG island 20799
Gm46047 8 89045693 to 89052979 7286 - lncRNA gene predicted gene, 46047
Cpgi20800 8 89046323 to 89046568 245 CpG island CpG island 20800
Tssr82390 8 89053006 to 89053037 31 - TSS region transcription start site region 82390
Tssr78680 8 89053202 to 89053252 50 + TSS region transcription start site region 78680
Gm35358 8 89085418 to 89130837 45419 - lncRNA gene predicted gene, 35358
Tssr2636 8 89130328 to 89130346 18 + TSS region transcription start site region 2636
Tssr2637 8 89130943 to 89130944 1 + TSS region transcription start site region 2637
Gm35305 8 89137153 to 89142424 5271 + lncRNA gene predicted gene, 35305
Gm6625 8 89146787 to 89147058 271 - pseudogene predicted gene 6625
Tssr82391 8 89147248 to 89147251 3 - TSS region transcription start site region 82391
Gm5356 8 89186946 to 89187560 614 - pseudogene predicted pseudogene 5356
D8Mit81 8 89203615 to 89203750 135 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 81
Gm35542 8 89219478 to 89230325 10847 + lncRNA gene predicted gene, 35542
Cpgi20801 8 89272345 to 89272821 476 CpG island CpG island 20801
D8Mit50 8 89351668 to 89351811 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 50
Tssr2638 8 89427219 to 89427246 27 + TSS region transcription start site region 2638
Gm35593 8 89427227 to 89462515 35288 + lncRNA gene predicted gene, 35593
Cpgi20802 8 89571948 to 89572114 166 CpG island CpG island 20802
Tssr2639 8 89580206 to 89580209 3 + TSS region transcription start site region 2639
Gm26331 8 89589435 to 89589541 106 - snRNA gene predicted gene, 26331
Gm24212 8 89667173 to 89667304 131 - snoRNA gene predicted gene, 24212
D8Mit307 8 89691871 to 89691948 77 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 307
Tssr78681 8 89776429 to 89776432 3 + TSS region transcription start site region 78681
Tssr82392 8 89824661 to 89824674 13 - TSS region transcription start site region 82392