Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:87238778-89618790

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280 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Gm27169 8 87203026 to 87293504 90478 + lincRNA gene predicted gene 27169
Gm18975 8 87241585 to 87242303 718 - pseudogene predicted gene, 18975
D8Mit45 8 87305375 to 87305495 120 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 45
Imraq2 8 87305375 to 87305495 120 QTL immune response to AAV2 QTL 2
Fcsa2 8 87305375 to 87305495 120 QTL femoral cross-sectional area 2
Gm27207 8 87354501 to 87373075 18574 - lincRNA gene predicted gene 27207
Gm27208 8 87381059 to 87387551 6492 - unclassified non-coding RNA gene predicted gene 27208
Tssr78593 8 87458427 to 87458447 20 + TSS region transcription start site region 78593
4930535O05Rik 8 87458444 to 87459435 991 + lincRNA gene RIKEN cDNA 4930535O05 gene
Gm19872 8 87460469 to 87463792 3323 + lincRNA gene predicted gene, 19872
Tssr78594 8 87460514 to 87460521 7 + TSS region transcription start site region 78594
Cpgi20770 8 87468748 to 87469691 943 CpG island CpG island 20770
Cbln1 8 87468853 to 87472592 3739 - protein coding gene cerebellin 1 precursor protein
Tssr82308 8 87469905 to 87469922 17 - TSS region transcription start site region 82308
Cpgi20771 8 87469949 to 87471268 1319 CpG island CpG island 20771
Tssr82309 8 87470098 to 87470109 11 - TSS region transcription start site region 82309
Tssr82310 8 87470296 to 87470302 6 - TSS region transcription start site region 82310
Tssr82311 8 87470451 to 87470461 10 - TSS region transcription start site region 82311
Tssr82312 8 87470639 to 87470651 12 - TSS region transcription start site region 82312
Tssr82313 8 87470668 to 87470677 9 - TSS region transcription start site region 82313
Cpgi20772 8 87471595 to 87473706 2111 CpG island CpG island 20772
Tssr82314 8 87472121 to 87472133 12 - TSS region transcription start site region 82314
Tssr82315 8 87472161 to 87472196 35 - TSS region transcription start site region 82315
Tssr82316 8 87472200 to 87472261 61 - TSS region transcription start site region 82316
Tssr82317 8 87472365 to 87472381 16 - TSS region transcription start site region 82317
Tssr2634 8 87472526 to 87472529 3 - TSS region transcription start site region 2634
Tssr82318 8 87472543 to 87472571 28 - TSS region transcription start site region 82318
Tssr82319 8 87472576 to 87472597 21 - TSS region transcription start site region 82319
Tssr82320 8 87472603 to 87472614 11 - TSS region transcription start site region 82320
Tssr82321 8 87472615 to 87472633 18 - TSS region transcription start site region 82321
Tssr78595 8 87472771 to 87472782 11 + TSS region transcription start site region 78595
Tssr78596 8 87472783 to 87472794 11 + TSS region transcription start site region 78596
Tssr78597 8 87472805 to 87472822 17 + TSS region transcription start site region 78597
Gm2694 8 87472812 to 87525554 52742 + lincRNA gene predicted gene 2694
Tssr78598 8 87472838 to 87472849 11 + TSS region transcription start site region 78598
Tssr78599 8 87472866 to 87472880 14 + TSS region transcription start site region 78599
Tssr78600 8 87472889 to 87472894 5 + TSS region transcription start site region 78600
Tssr78601 8 87472896 to 87472910 14 + TSS region transcription start site region 78601
Tssr78602 8 87473153 to 87473163 10 + TSS region transcription start site region 78602
Tssr78603 8 87473250 to 87473257 7 + TSS region transcription start site region 78603
Tssr78604 8 87473379 to 87473398 19 + TSS region transcription start site region 78604
Tssr78605 8 87473407 to 87473418 11 + TSS region transcription start site region 78605
Gm27016 8 87476055 to 87495462 19407 - lincRNA gene predicted gene, 27016
1700120C18Rik 8 87500049 to 87501231 1182 - lincRNA gene RIKEN cDNA 1700120C18 gene
Tssr82322 8 87501218 to 87501243 25 - TSS region transcription start site region 82322
Tssr78606 8 87521373 to 87521378 5 + TSS region transcription start site region 78606
Cpgi20773 8 87536784 to 87536941 157 CpG island CpG island 20773
Tssr78607 8 87563846 to 87563869 23 + TSS region transcription start site region 78607
Tssr78608 8 87563876 to 87563914 38 + TSS region transcription start site region 78608
4933402J07Rik 8 87563907 to 87589197 25290 + protein coding gene RIKEN cDNA 4933402J07 gene
Tssr78609 8 87563922 to 87563931 9 + TSS region transcription start site region 78609
1700096P03Rik 8 87636098 to 87642210 6112 - lncRNA gene RIKEN cDNA 1700096P03 gene
Gm24841 8 87636657 to 87637013 356 + unclassified non-coding RNA gene predicted gene, 24841
Cpgi20774 8 87656480 to 87656913 433 CpG island CpG island 20774
Cpgi20775 8 87660131 to 87660775 644 CpG island CpG island 20775
Zfp423 8 87661810 to 87959595 297785 - protein coding gene zinc finger protein 423
Cpgi20776 8 87662354 to 87663461 1107 CpG island CpG island 20776
Tssr82323 8 87694869 to 87694902 33 - TSS region transcription start site region 82323
Cpgi20777 8 87742129 to 87742367 238 CpG island CpG island 20777
Tssr82324 8 87804390 to 87804402 12 - TSS region transcription start site region 82324
Tssr82325 8 87804411 to 87804463 52 - TSS region transcription start site region 82325
D8Mit57 8 87820882 to 87821044 162 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 57
D8Mit208 8 87866136 to 87866277 141 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 208
Gm34412 8 87926875 to 87929536 2661 + lncRNA gene predicted gene, 34412
Cpgi20778 8 87943492 to 87944181 689 CpG island CpG island 20778
Tssr82326 8 87943557 to 87943589 32 - TSS region transcription start site region 82326
Cpgi20779 8 87958179 to 87962827 4648 CpG island CpG island 20779
Tssr82327 8 87959534 to 87959558 24 - TSS region transcription start site region 82327
Tssr82328 8 87959560 to 87959576 16 - TSS region transcription start site region 82328
Tssr82329 8 87960485 to 87960501 16 - TSS region transcription start site region 82329
Tssr82330 8 87960517 to 87960581 64 - TSS region transcription start site region 82330
Tssr82331 8 87960585 to 87960619 34 - TSS region transcription start site region 82331
Tssr82332 8 87960620 to 87960642 22 - TSS region transcription start site region 82332
Tssr82333 8 87960646 to 87960661 15 - TSS region transcription start site region 82333
Tssr82334 8 87960662 to 87960694 32 - TSS region transcription start site region 82334
Tssr82335 8 87960712 to 87960723 11 - TSS region transcription start site region 82335
Tssr82336 8 87960808 to 87960822 14 - TSS region transcription start site region 82336
Gm42032 8 87968023 to 87968913 890 + lncRNA gene predicted gene, 42032
Cpgi20780 8 87974613 to 87974959 346 CpG island CpG island 20780
Gm39217 8 88024687 to 88034171 9484 + lncRNA gene predicted gene, 39217
Gm2716 8 88051511 to 88070810 19299 - pseudogene predicted gene 2716
Gm18678 8 88074275 to 88074804 529 - pseudogene predicted gene, 18678
D8Mit80 8 88102903 to 88103009 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 80
Idd22 8 88102903 to 88103009 106 QTL insulin dependent diabetes susceptibility 22
Tssr82337 8 88108815 to 88108817 2 - TSS region transcription start site region 82337
Tssr78610 8 88115984 to 88115996 12 + TSS region transcription start site region 78610
Tssr82338 8 88118583 to 88118597 14 - TSS region transcription start site region 82338
Cpgi20781 8 88118590 to 88119236 646 CpG island CpG island 20781
Tssr82339 8 88118602 to 88118611 9 - TSS region transcription start site region 82339
Tssr82340 8 88118623 to 88118628 5 - TSS region transcription start site region 82340
Tssr78611 8 88118747 to 88118777 30 + TSS region transcription start site region 78611
Cnep1r1 8 88118769 to 88135110 16341 + protein coding gene CTD nuclear envelope phosphatase 1 regulatory subunit 1
Tssr78612 8 88118779 to 88118816 37 + TSS region transcription start site region 78612
Cpgi20782 8 88137641 to 88138657 1016 CpG island CpG island 20782
Tssr78613 8 88137844 to 88137902 58 + TSS region transcription start site region 78613
Heatr3 8 88137885 to 88171952 34067 + protein coding gene HEAT repeat containing 3
Tssr78614 8 88137906 to 88137919 13 + TSS region transcription start site region 78614
Gm9988 8 88138079 to 88138517 438 - pseudogene predicted gene 9988
Mir7071 8 88138206 to 88138274 68 + miRNA gene microRNA 7071
Tssr82341 8 88171938 to 88171943 5 - TSS region transcription start site region 82341
9430002A10Rik 8 88174560 to 88175034 474 + lincRNA gene RIKEN cDNA 9430002A10 gene
Tssr82342 8 88180200 to 88180201 1 - TSS region transcription start site region 82342
Cpgi20783 8 88198736 to 88200838 2102 CpG island CpG island 20783
Tssr78615 8 88199194 to 88199224 30 + TSS region transcription start site region 78615
Tent4b 8 88199213 to 88259722 60509 + protein coding gene terminal nucleotidyltransferase 4B
Tssr78616 8 88199229 to 88199232 3 + TSS region transcription start site region 78616
Tssr78617 8 88199236 to 88199247 11 + TSS region transcription start site region 78617
Tssr82343 8 88199320 to 88199355 35 - TSS region transcription start site region 82343
Tssr78618 8 88199452 to 88199463 11 + TSS region transcription start site region 78618
Tssr78619 8 88199513 to 88199555 42 + TSS region transcription start site region 78619
Tssr2635 8 88243972 to 88243986 14 + TSS region transcription start site region 2635
Tssr78620 8 88244683 to 88244687 4 + TSS region transcription start site region 78620
Tssr78621 8 88250791 to 88250832 41 + TSS region transcription start site region 78621
Tssr78622 8 88251991 to 88252014 23 + TSS region transcription start site region 78622
Tssr78623 8 88263170 to 88263175 5 + TSS region transcription start site region 78623
Cpgi20784 8 88272201 to 88273080 879 CpG island CpG island 20784
Tssr78624 8 88272253 to 88272265 12 + TSS region transcription start site region 78624
Tssr78625 8 88272284 to 88272298 14 + TSS region transcription start site region 78625
Adcy7 8 88272403 to 88329962 57559 + protein coding gene adenylate cyclase 7
Tssr78626 8 88272438 to 88272451 13 + TSS region transcription start site region 78626
Tssr78627 8 88272581 to 88272585 4 + TSS region transcription start site region 78627
Tssr78628 8 88275385 to 88275404 19 + TSS region transcription start site region 78628
Tssr78629 8 88276310 to 88276359 49 + TSS region transcription start site region 78629
Tssr78630 8 88289028 to 88289076 48 + TSS region transcription start site region 78630
Tssr78631 8 88289078 to 88289091 13 + TSS region transcription start site region 78631
Tssr78632 8 88290552 to 88290575 23 + TSS region transcription start site region 78632
Tssr78633 8 88293763 to 88293795 32 + TSS region transcription start site region 78633
Tssr78634 8 88294222 to 88294236 14 + TSS region transcription start site region 78634
Tssr78635 8 88300374 to 88300384 10 + TSS region transcription start site region 78635
Tssr78636 8 88300404 to 88300439 35 + TSS region transcription start site region 78636
Tssr78637 8 88300442 to 88300460 18 + TSS region transcription start site region 78637
Tssr78638 8 88301168 to 88301170 2 + TSS region transcription start site region 78638
D8Mit268 8 88303082 to 88303192 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 268
Tssr78639 8 88306451 to 88306470 19 + TSS region transcription start site region 78639
Tssr78640 8 88306609 to 88306622 13 + TSS region transcription start site region 78640
Tssr78641 8 88309707 to 88309728 21 + TSS region transcription start site region 78641
Tssr78642 8 88309732 to 88309750 18 + TSS region transcription start site region 78642
Tssr78643 8 88320643 to 88320658 15 + TSS region transcription start site region 78643
Tssr78644 8 88320748 to 88320760 12 + TSS region transcription start site region 78644
Tssr78645 8 88320777 to 88320813 36 + TSS region transcription start site region 78645
Tssr78646 8 88320818 to 88320841 23 + TSS region transcription start site region 78646
Tssr78647 8 88329657 to 88329671 14 + TSS region transcription start site region 78647
Brd7 8 88331039 to 88362194 31155 - protein coding gene bromodomain containing 7
Tssr78648 8 88331056 to 88331060 4 + TSS region transcription start site region 78648
Tssr82344 8 88334178 to 88334191 13 - TSS region transcription start site region 82344
Tssr82345 8 88354711 to 88354742 31 - TSS region transcription start site region 82345
Cpgi20785 8 88361073 to 88362501 1428 CpG island CpG island 20785
Tssr78649 8 88361531 to 88361575 44 + TSS region transcription start site region 78649
Tssr82346 8 88361703 to 88361717 14 - TSS region transcription start site region 82346
Tssr82347 8 88361911 to 88361925 14 - TSS region transcription start site region 82347
Tssr82348 8 88361941 to 88361976 35 - TSS region transcription start site region 82348
Tssr82349 8 88362031 to 88362034 3 - TSS region transcription start site region 82349
Tssr82350 8 88362042 to 88362049 7 - TSS region transcription start site region 82350
Tssr82351 8 88362108 to 88362122 14 - TSS region transcription start site region 82351
Tssr82352 8 88362154 to 88362210 56 - TSS region transcription start site region 82352
Tssr82353 8 88362218 to 88362247 29 - TSS region transcription start site region 82353
Gm34751 8 88381590 to 88389037 7447 - lncRNA gene predicted gene, 34751
Tssr82354 8 88388757 to 88388767 10 - TSS region transcription start site region 82354
Gm45497 8 88391121 to 88392228 1107 + pseudogene predicted gene 45497
Cd4ts3 8 88396181 to 88396393 212 QTL CD4 T cell subset 3
D8Mit51 8 88396181 to 88396393 212 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 51
Gm39218 8 88417460 to 88428840 11380 + lncRNA gene predicted gene, 39218
Tssr78650 8 88428731 to 88428740 9 + TSS region transcription start site region 78650
Tssr78651 8 88428778 to 88428790 12 + TSS region transcription start site region 78651
Tssr78652 8 88428810 to 88428823 13 + TSS region transcription start site region 78652
Tssr78653 8 88428876 to 88428901 25 + TSS region transcription start site region 78653
Cpgi20786 8 88451032 to 88451271 239 CpG island CpG island 20786
Cpgi20787 8 88453845 to 88455192 1347 CpG island CpG island 20787
Tssr82355 8 88454401 to 88454409 8 - TSS region transcription start site region 82355
Cpgi20788 8 88455357 to 88455777 420 CpG island CpG island 20788
Gm34846 8 88480006 to 88485050 5044 + lncRNA gene predicted gene, 34846
Gm35076 8 88512558 to 88519485 6927 + lncRNA gene predicted gene, 35076
Gm35162 8 88519575 to 88521220 1645 - lncRNA gene predicted gene, 35162
Cpgi20789 8 88520825 to 88522455 1630 CpG island CpG island 20789
Tssr82356 8 88521100 to 88521146 46 - TSS region transcription start site region 82356
Tssr78654 8 88521248 to 88521280 32 + TSS region transcription start site region 78654
Tssr78655 8 88521348 to 88521371 23 + TSS region transcription start site region 78655
Nkd1 8 88521354 to 88594884 73530 + protein coding gene naked cuticle 1
D8Mit365 8 88523383 to 88523551 168 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-365
Gm45496 8 88560033 to 88562949 2916 + unclassified gene predicted gene 45496
Tssr78656 8 88577545 to 88577549 4 + TSS region transcription start site region 78656
Tssr78657 8 88582780 to 88582782 2 + TSS region transcription start site region 78657
Tssr78658 8 88583196 to 88583204 8 + TSS region transcription start site region 78658
Snx20 8 88626563 to 88636128 9565 - protein coding gene sorting nexin 20
Cpgi20790 8 88626937 to 88628104 1167 CpG island CpG island 20790
Tssr82357 8 88635976 to 88635987 11 - TSS region transcription start site region 82357
Tssr82358 8 88636059 to 88636116 57 - TSS region transcription start site region 82358
Tssr82359 8 88636117 to 88636132 15 - TSS region transcription start site region 82359
Tssr82360 8 88636152 to 88636163 11 - TSS region transcription start site region 82360
Cpgi20791 8 88647295 to 88647644 349 CpG island CpG island 20791
Nod2 8 88647315 to 88688474 41159 + protein coding gene nucleotide-binding oligomerization domain containing 2
Tssr78659 8 88647336 to 88647391 55 + TSS region transcription start site region 78659
Tssr82361 8 88650123 to 88650139 16 - TSS region transcription start site region 82361
Tssr78660 8 88650535 to 88650546 11 + TSS region transcription start site region 78660
Tssr82362 8 88654198 to 88654201 3 - TSS region transcription start site region 82362
Tssr78661 8 88658021 to 88658048 27 + TSS region transcription start site region 78661
Tssr78662 8 88658075 to 88658098 23 + TSS region transcription start site region 78662
Tssr78663 8 88660009 to 88660027 18 + TSS region transcription start site region 78663
Tssr82363 8 88662361 to 88662364 3 - TSS region transcription start site region 82363