Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85828379-89118398

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368 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Itfg1 8 85717578 to 85840921 123343 - protein coding gene integrin alpha FG-GAP repeat containing 1
Cpgi20763 8 85840297 to 85841317 1020 CpG island CpG island 20763
Tssr82282 8 85840583 to 85840594 11 - TSS region transcription start site region 82282
Tssr82283 8 85840608 to 85840642 34 - TSS region transcription start site region 82283
Tssr82284 8 85840734 to 85840780 46 - TSS region transcription start site region 82284
Tssr82285 8 85840782 to 85840794 12 - TSS region transcription start site region 82285
Tssr82286 8 85840877 to 85840957 80 - TSS region transcription start site region 82286
Phkb 8 85840959 to 86061376 220417 + protein coding gene phosphorylase kinase beta
Tssr78565 8 85840971 to 85841028 57 + TSS region transcription start site region 78565
Gm16167 8 85853376 to 85854436 1060 - pseudogene predicted gene 16167
Gm19171 8 85956060 to 85956795 735 - pseudogene predicted gene, 19171
Hm629797 8 85994245 to 85996642 2397 + sense intronic lncRNA gene cDNA sequence HM629797
2010205J10Rik 8 86063340 to 86064249 909 unclassified gene RIKEN cDNA 2010205J10 gene
Tssr78566 8 86064799 to 86064803 4 + TSS region transcription start site region 78566
Gm18474 8 86114535 to 86118504 3969 - pseudogene predicted gene, 18474
Gm21030 8 86146153 to 86147294 1141 - pseudogene predicted gene, 21030
D8Mit347 8 86151668 to 86151842 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 347
Gm33632 8 86158243 to 86212023 53780 + lncRNA gene predicted gene, 33632
Gm33577 8 86208021 to 86211211 3190 - lncRNA gene predicted gene, 33577
Tssr78567 8 86209030 to 86209034 4 + TSS region transcription start site region 78567
Gm23904 8 86233854 to 86233977 123 + snoRNA gene predicted gene, 23904
Gm2641 8 86256555 to 86258369 1814 - pseudogene predicted gene 2641
Gm33687 8 86279797 to 86284080 4283 + lncRNA gene predicted gene, 33687
Tssr78568 8 86286958 to 86286960 2 + TSS region transcription start site region 78568
Gm24490 8 86292501 to 86292598 97 + snRNA gene predicted gene, 24490
Tssr78569 8 86388037 to 86388041 4 + TSS region transcription start site region 78569
Abcc12 8 86504576 to 86580688 76112 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 12
Tssr82287 8 86527683 to 86527729 46 - TSS region transcription start site region 82287
D8Mit150 8 86546828 to 86546964 136 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 150
Tssr82288 8 86580647 to 86580660 13 - TSS region transcription start site region 82288
Tssr82289 8 86580664 to 86580675 11 - TSS region transcription start site region 82289
Gm44348 8 86586962 to 86587083 121 + miRNA gene predicted gene, 44348
Tssr78570 8 86615399 to 86615401 2 + TSS region transcription start site region 78570
D8Mit239 8 86620792 to 86620916 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 239
Cpgi20764 8 86623665 to 86624702 1037 CpG island CpG island 20764
Lonp2 8 86624043 to 86716636 92593 + protein coding gene lon peptidase 2, peroxisomal
Tssr78571 8 86624064 to 86624161 97 + TSS region transcription start site region 78571
Gm16177 8 86659318 to 86660035 717 - pseudogene predicted gene 16177
Gm22305 8 86671236 to 86671343 107 - snRNA gene predicted gene, 22305
Tssr82290 8 86686734 to 86686747 13 - TSS region transcription start site region 82290
Tssr82291 8 86686749 to 86686763 14 - TSS region transcription start site region 82291
Siah1a 8 86724007 to 86745934 21927 - protein coding gene siah E3 ubiquitin protein ligase 1A
Tssr82292 8 86728715 to 86728726 11 - TSS region transcription start site region 82292
Cpgi20765 8 86745071 to 86746782 1711 CpG island CpG island 20765
Tssr78572 8 86745447 to 86745472 25 + TSS region transcription start site region 78572
Tssr78573 8 86745500 to 86745515 15 + TSS region transcription start site region 78573
Tssr78574 8 86745536 to 86745554 18 + TSS region transcription start site region 78574
Tssr78575 8 86745590 to 86745601 11 + TSS region transcription start site region 78575
Tssr78576 8 86745602 to 86745632 30 + TSS region transcription start site region 78576
Tssr78577 8 86745655 to 86745660 5 + TSS region transcription start site region 78577
Tssr78578 8 86745679 to 86745684 5 + TSS region transcription start site region 78578
Gm10638 8 86745699 to 86746603 904 + unclassified gene predicted gene 10638
Tssr82293 8 86745950 to 86746054 104 - TSS region transcription start site region 82293
Tssr82294 8 86746093 to 86746123 30 - TSS region transcription start site region 82294
Cpgi20766 8 86757283 to 86757584 301 CpG island CpG island 20766
Tssr82295 8 86764653 to 86764684 31 - TSS region transcription start site region 82295
Tssr82296 8 86786740 to 86786742 2 - TSS region transcription start site region 82296
Gm39215 8 86805454 to 86826230 20776 - lncRNA gene predicted gene, 39215
Tssr78579 8 86806382 to 86806385 3 + TSS region transcription start site region 78579
N4bp1 8 86841136 to 86885258 44122 - protein coding gene NEDD4 binding protein 1
Tssr82297 8 86841792 to 86841820 28 - TSS region transcription start site region 82297
Gm33877 8 86849296 to 86851618 2322 - lncRNA gene predicted gene, 33877
F830004M19Rik 8 86865499 to 86869522 4023 unclassified non-coding RNA gene RIKEN cDNA F830004M19 gene
Tssr82298 8 86883277 to 86883295 18 - TSS region transcription start site region 82298
Tssr82299 8 86883312 to 86883329 17 - TSS region transcription start site region 82299
Tssr78580 8 86884330 to 86884341 11 + TSS region transcription start site region 78580
Cpgi20767 8 86884350 to 86885500 1150 CpG island CpG island 20767
Tssr78581 8 86884373 to 86884382 9 + TSS region transcription start site region 78581
Tssr82300 8 86884960 to 86885049 89 - TSS region transcription start site region 82300
Tssr78582 8 86885142 to 86885161 19 + TSS region transcription start site region 78582
Tssr82301 8 86885174 to 86885189 15 - TSS region transcription start site region 82301
Tssr82302 8 86885222 to 86885282 60 - TSS region transcription start site region 82302
Tssr82303 8 86885283 to 86885307 24 - TSS region transcription start site region 82303
Tssr82304 8 86885315 to 86885326 11 - TSS region transcription start site region 82304
2010110E17Rik 8 86885688 to 86886566 878 + lincRNA gene RIKEN cDNA 2010110E17 gene
Tssr82305 8 86888079 to 86888096 17 - TSS region transcription start site region 82305
Tssr78583 8 86888401 to 86888419 18 + TSS region transcription start site region 78583
Tssr78584 8 86894023 to 86894027 4 + TSS region transcription start site region 78584
Tssr78585 8 86895128 to 86895138 10 + TSS region transcription start site region 78585
Gm27167 8 86902453 to 86919422 16969 + lincRNA gene predicted gene 27167
Cpgi20768 8 86903202 to 86903397 195 CpG island CpG island 20768
Tssr82306 8 86911268 to 86911278 10 - TSS region transcription start site region 82306
Tssr78586 8 86914781 to 86914788 7 + TSS region transcription start site region 78586
Tssr78587 8 86915072 to 86915093 21 + TSS region transcription start site region 78587
Fth-ps3 8 86915157 to 86915514 357 + pseudogene ferritin heavy chain, pseudogene 3
Tssr78588 8 86915183 to 86915211 28 + TSS region transcription start site region 78588
Gm27168 8 86920477 to 86921147 670 - lincRNA gene predicted gene 27168
Gm33391 8 86922117 to 86926374 4257 + lncRNA gene predicted gene, 33391
Gm24781 8 86965503 to 86965619 116 - snoRNA gene predicted gene, 24781
Cpgi20769 8 87037772 to 87038547 775 CpG island CpG island 20769
Tssr78589 8 87047689 to 87047714 25 + TSS region transcription start site region 78589
Rps13-ps1 8 87047694 to 87048215 521 + pseudogene ribosomal protein S13, pseudogene 1
Gm18602 8 87051397 to 87052247 850 - pseudogene predicted gene, 18602
Gm5118 8 87093307 to 87100987 7680 + lincRNA gene predicted gene 5118
D8Mit348 8 87098639 to 87098837 198 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 348
Tssr78590 8 87101716 to 87101723 7 + TSS region transcription start site region 78590
Gm34025 8 87143147 to 87146335 3188 - lncRNA gene predicted gene, 34025
Gm27246 8 87167735 to 87188911 21176 + lincRNA gene predicted gene 27246
Gm10637 8 87169747 to 87199850 30103 - lincRNA gene predicted gene 10637
Tssr78591 8 87175370 to 87175374 4 + TSS region transcription start site region 78591
Gm39216 8 87196212 to 87198404 2192 + lncRNA gene predicted gene, 39216
Gm27169 8 87203026 to 87293504 90478 + lincRNA gene predicted gene 27169
Tssr78592 8 87218572 to 87218591 19 + TSS region transcription start site region 78592
Tssr82307 8 87233404 to 87233405 1 - TSS region transcription start site region 82307
Gm18975 8 87241585 to 87242303 718 - pseudogene predicted gene, 18975
D8Mit45 8 87305375 to 87305495 120 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 45
Imraq2 8 87305375 to 87305495 120 QTL immune response to AAV2 QTL 2
Fcsa2 8 87305375 to 87305495 120 QTL femoral cross-sectional area 2
Gm27207 8 87354501 to 87373075 18574 - lincRNA gene predicted gene 27207
Gm27208 8 87381059 to 87387551 6492 - unclassified non-coding RNA gene predicted gene 27208
Tssr78593 8 87458427 to 87458447 20 + TSS region transcription start site region 78593
4930535O05Rik 8 87458444 to 87459435 991 + lincRNA gene RIKEN cDNA 4930535O05 gene
Gm19872 8 87460469 to 87463792 3323 + lincRNA gene predicted gene, 19872
Tssr78594 8 87460514 to 87460521 7 + TSS region transcription start site region 78594
Cpgi20770 8 87468748 to 87469691 943 CpG island CpG island 20770
Cbln1 8 87468853 to 87472592 3739 - protein coding gene cerebellin 1 precursor protein
Tssr82308 8 87469905 to 87469922 17 - TSS region transcription start site region 82308
Cpgi20771 8 87469949 to 87471268 1319 CpG island CpG island 20771
Tssr82309 8 87470098 to 87470109 11 - TSS region transcription start site region 82309
Tssr82310 8 87470296 to 87470302 6 - TSS region transcription start site region 82310
Tssr82311 8 87470451 to 87470461 10 - TSS region transcription start site region 82311
Tssr82312 8 87470639 to 87470651 12 - TSS region transcription start site region 82312
Tssr82313 8 87470668 to 87470677 9 - TSS region transcription start site region 82313
Cpgi20772 8 87471595 to 87473706 2111 CpG island CpG island 20772
Tssr82314 8 87472121 to 87472133 12 - TSS region transcription start site region 82314
Tssr82315 8 87472161 to 87472196 35 - TSS region transcription start site region 82315
Tssr82316 8 87472200 to 87472261 61 - TSS region transcription start site region 82316
Tssr82317 8 87472365 to 87472381 16 - TSS region transcription start site region 82317
Tssr2634 8 87472526 to 87472529 3 - TSS region transcription start site region 2634
Tssr82318 8 87472543 to 87472571 28 - TSS region transcription start site region 82318
Tssr82319 8 87472576 to 87472597 21 - TSS region transcription start site region 82319
Tssr82320 8 87472603 to 87472614 11 - TSS region transcription start site region 82320
Tssr82321 8 87472615 to 87472633 18 - TSS region transcription start site region 82321
Tssr78595 8 87472771 to 87472782 11 + TSS region transcription start site region 78595
Tssr78596 8 87472783 to 87472794 11 + TSS region transcription start site region 78596
Tssr78597 8 87472805 to 87472822 17 + TSS region transcription start site region 78597
Gm2694 8 87472812 to 87525554 52742 + lincRNA gene predicted gene 2694
Tssr78598 8 87472838 to 87472849 11 + TSS region transcription start site region 78598
Tssr78599 8 87472866 to 87472880 14 + TSS region transcription start site region 78599
Tssr78600 8 87472889 to 87472894 5 + TSS region transcription start site region 78600
Tssr78601 8 87472896 to 87472910 14 + TSS region transcription start site region 78601
Tssr78602 8 87473153 to 87473163 10 + TSS region transcription start site region 78602
Tssr78603 8 87473250 to 87473257 7 + TSS region transcription start site region 78603
Tssr78604 8 87473379 to 87473398 19 + TSS region transcription start site region 78604
Tssr78605 8 87473407 to 87473418 11 + TSS region transcription start site region 78605
Gm27016 8 87476055 to 87495462 19407 - lincRNA gene predicted gene, 27016
1700120C18Rik 8 87500049 to 87501231 1182 - lincRNA gene RIKEN cDNA 1700120C18 gene
Tssr82322 8 87501218 to 87501243 25 - TSS region transcription start site region 82322
Tssr78606 8 87521373 to 87521378 5 + TSS region transcription start site region 78606
Cpgi20773 8 87536784 to 87536941 157 CpG island CpG island 20773
Tssr78607 8 87563846 to 87563869 23 + TSS region transcription start site region 78607
Tssr78608 8 87563876 to 87563914 38 + TSS region transcription start site region 78608
4933402J07Rik 8 87563907 to 87589197 25290 + protein coding gene RIKEN cDNA 4933402J07 gene
Tssr78609 8 87563922 to 87563931 9 + TSS region transcription start site region 78609
1700096P03Rik 8 87636098 to 87642210 6112 - lncRNA gene RIKEN cDNA 1700096P03 gene
Gm24841 8 87636657 to 87637013 356 + unclassified non-coding RNA gene predicted gene, 24841
Cpgi20774 8 87656480 to 87656913 433 CpG island CpG island 20774
Cpgi20775 8 87660131 to 87660775 644 CpG island CpG island 20775
Zfp423 8 87661810 to 87959595 297785 - protein coding gene zinc finger protein 423
Cpgi20776 8 87662354 to 87663461 1107 CpG island CpG island 20776
Tssr82323 8 87694869 to 87694902 33 - TSS region transcription start site region 82323
Cpgi20777 8 87742129 to 87742367 238 CpG island CpG island 20777
Tssr82324 8 87804390 to 87804402 12 - TSS region transcription start site region 82324
Tssr82325 8 87804411 to 87804463 52 - TSS region transcription start site region 82325
D8Mit57 8 87820882 to 87821044 162 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 57
D8Mit208 8 87866136 to 87866277 141 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 208
Gm34412 8 87926875 to 87929536 2661 + lncRNA gene predicted gene, 34412
Cpgi20778 8 87943492 to 87944181 689 CpG island CpG island 20778
Tssr82326 8 87943557 to 87943589 32 - TSS region transcription start site region 82326
Cpgi20779 8 87958179 to 87962827 4648 CpG island CpG island 20779
Tssr82327 8 87959534 to 87959558 24 - TSS region transcription start site region 82327
Tssr82328 8 87959560 to 87959576 16 - TSS region transcription start site region 82328
Tssr82329 8 87960485 to 87960501 16 - TSS region transcription start site region 82329
Tssr82330 8 87960517 to 87960581 64 - TSS region transcription start site region 82330
Tssr82331 8 87960585 to 87960619 34 - TSS region transcription start site region 82331
Tssr82332 8 87960620 to 87960642 22 - TSS region transcription start site region 82332
Tssr82333 8 87960646 to 87960661 15 - TSS region transcription start site region 82333
Tssr82334 8 87960662 to 87960694 32 - TSS region transcription start site region 82334
Tssr82335 8 87960712 to 87960723 11 - TSS region transcription start site region 82335
Tssr82336 8 87960808 to 87960822 14 - TSS region transcription start site region 82336
Gm42032 8 87968023 to 87968913 890 + lncRNA gene predicted gene, 42032
Cpgi20780 8 87974613 to 87974959 346 CpG island CpG island 20780
Gm39217 8 88024687 to 88034171 9484 + lncRNA gene predicted gene, 39217
Gm2716 8 88051511 to 88070810 19299 - pseudogene predicted gene 2716
Gm18678 8 88074275 to 88074804 529 - pseudogene predicted gene, 18678
D8Mit80 8 88102903 to 88103009 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 80
Idd22 8 88102903 to 88103009 106 QTL insulin dependent diabetes susceptibility 22
Tssr82337 8 88108815 to 88108817 2 - TSS region transcription start site region 82337
Tssr78610 8 88115984 to 88115996 12 + TSS region transcription start site region 78610
Tssr82338 8 88118583 to 88118597 14 - TSS region transcription start site region 82338
Cpgi20781 8 88118590 to 88119236 646 CpG island CpG island 20781
Tssr82339 8 88118602 to 88118611 9 - TSS region transcription start site region 82339
Tssr82340 8 88118623 to 88118628 5 - TSS region transcription start site region 82340
Tssr78611 8 88118747 to 88118777 30 + TSS region transcription start site region 78611
Cnep1r1 8 88118769 to 88135110 16341 + protein coding gene CTD nuclear envelope phosphatase 1 regulatory subunit 1
Tssr78612 8 88118779 to 88118816 37 + TSS region transcription start site region 78612
Cpgi20782 8 88137641 to 88138657 1016 CpG island CpG island 20782
Tssr78613 8 88137844 to 88137902 58 + TSS region transcription start site region 78613
Heatr3 8 88137885 to 88171952 34067 + protein coding gene HEAT repeat containing 3