Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85728243-86642023

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itfg1 8 85717578 to 85840921 123343 - protein coding gene integrin alpha FG-GAP repeat containing 1
Tssr78563 8 85730810 to 85730828 18 + TSS region transcription start site region 78563
Gm39214 8 85730816 to 85765095 34279 + lincRNA gene predicted gene, 39214
Tssr82281 8 85760306 to 85760315 9 - TSS region transcription start site region 82281
Tssr78564 8 85824294 to 85824330 36 + TSS region transcription start site region 78564
Atp5k-ps1 8 85824313 to 85824603 290 + pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 1
Cpgi20763 8 85840297 to 85841317 1020 CpG island CpG island 20763
Tssr82282 8 85840583 to 85840594 11 - TSS region transcription start site region 82282
Tssr82283 8 85840608 to 85840642 34 - TSS region transcription start site region 82283
Tssr82284 8 85840734 to 85840780 46 - TSS region transcription start site region 82284
Tssr82285 8 85840782 to 85840794 12 - TSS region transcription start site region 82285
Tssr82286 8 85840877 to 85840957 80 - TSS region transcription start site region 82286
Phkb 8 85840959 to 86061376 220417 + protein coding gene phosphorylase kinase beta
Tssr78565 8 85840971 to 85841028 57 + TSS region transcription start site region 78565
Gm16167 8 85853376 to 85854436 1060 - pseudogene predicted gene 16167
Gm19171 8 85956060 to 85956795 735 - pseudogene predicted gene, 19171
Hm629797 8 85994245 to 85996642 2397 + sense intronic lncRNA gene cDNA sequence HM629797
2010205J10Rik 8 86063340 to 86064249 909 unclassified gene RIKEN cDNA 2010205J10 gene
Tssr78566 8 86064799 to 86064803 4 + TSS region transcription start site region 78566
Gm18474 8 86114535 to 86118504 3969 - pseudogene predicted gene, 18474
Gm21030 8 86146153 to 86147294 1141 - pseudogene predicted gene, 21030
D8Mit347 8 86151668 to 86151842 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 347
Gm33632 8 86158243 to 86212023 53780 + lncRNA gene predicted gene, 33632
Gm33577 8 86208021 to 86211211 3190 - lncRNA gene predicted gene, 33577
Tssr78567 8 86209030 to 86209034 4 + TSS region transcription start site region 78567
Gm23904 8 86233854 to 86233977 123 + snoRNA gene predicted gene, 23904
Gm2641 8 86256555 to 86258369 1814 - pseudogene predicted gene 2641
Gm33687 8 86279797 to 86284080 4283 + lncRNA gene predicted gene, 33687
Tssr78568 8 86286958 to 86286960 2 + TSS region transcription start site region 78568
Gm24490 8 86292501 to 86292598 97 + snRNA gene predicted gene, 24490
Tssr78569 8 86388037 to 86388041 4 + TSS region transcription start site region 78569
Abcc12 8 86504576 to 86580688 76112 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 12
Tssr82287 8 86527683 to 86527729 46 - TSS region transcription start site region 82287
D8Mit150 8 86546828 to 86546964 136 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 150
Tssr82288 8 86580647 to 86580660 13 - TSS region transcription start site region 82288
Tssr82289 8 86580664 to 86580675 11 - TSS region transcription start site region 82289
Gm44348 8 86586962 to 86587083 121 + miRNA gene predicted gene, 44348
Tssr78570 8 86615399 to 86615401 2 + TSS region transcription start site region 78570
D8Mit239 8 86620792 to 86620916 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 239
Cpgi20764 8 86623665 to 86624702 1037 CpG island CpG island 20764
Lonp2 8 86624043 to 86716636 92593 + protein coding gene lon peptidase 2, peroxisomal
Tssr78571 8 86624064 to 86624161 97 + TSS region transcription start site region 78571