Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85554799-86574803

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnaja2 8 85537640 to 85555271 17631 - protein coding gene DnaJ heat shock protein family (Hsp40) member A2
Cpgi20761 8 85554713 to 85555999 1286 CpG island CpG island 20761
Tssr82276 8 85555261 to 85555315 54 - TSS region transcription start site region 82276
Tssr82277 8 85555317 to 85555374 57 - TSS region transcription start site region 82277
Tssr78558 8 85555453 to 85555500 47 + TSS region transcription start site region 78558
Tssr82278 8 85559435 to 85559439 4 - TSS region transcription start site region 82278
D8Ertd294e 8 85576670 to 85576870 200 DNA segment DNA segment, Chr 8, ERATO Doi 294, expressed
Gm45424 8 85599832 to 85603131 3299 + unclassified gene predicted gene 45424
Tssr78559 8 85602024 to 85602037 13 + TSS region transcription start site region 78559
Tssr78560 8 85602042 to 85602051 9 + TSS region transcription start site region 78560
Tssr78561 8 85602066 to 85602073 7 + TSS region transcription start site region 78561
Gm33367 8 85602712 to 85607270 4558 - lncRNA gene predicted gene, 33367
Gm45425 8 85605462 to 85610761 5299 + lincRNA gene predicted gene 45425
Neto2 8 85636588 to 85700919 64331 - protein coding gene neuropilin (NRP) and tolloid (TLL)-like 2
D8Mit79 8 85662583 to 85662689 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 79
Cpgi20762 8 85700100 to 85701467 1367 CpG island CpG island 20762
Tssr82279 8 85700885 to 85700900 15 - TSS region transcription start site region 82279
Mir8109 8 85700905 to 85701021 116 + miRNA gene microRNA 8109
Tssr82280 8 85700923 to 85700924 1 - TSS region transcription start site region 82280
Tssr78562 8 85700996 to 85701025 29 + TSS region transcription start site region 78562
1500002J14Rik 8 85701073 to 85701825 752 unclassified gene RIKEN cDNA 1500002J14 gene
Itfg1 8 85717578 to 85840921 123343 - protein coding gene integrin alpha FG-GAP repeat containing 1
Tssr78563 8 85730810 to 85730828 18 + TSS region transcription start site region 78563
Gm39214 8 85730816 to 85765095 34279 + lincRNA gene predicted gene, 39214
Tssr82281 8 85760306 to 85760315 9 - TSS region transcription start site region 82281
Tssr78564 8 85824294 to 85824330 36 + TSS region transcription start site region 78564
Atp5k-ps1 8 85824313 to 85824603 290 + pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 1
Cpgi20763 8 85840297 to 85841317 1020 CpG island CpG island 20763
Tssr82282 8 85840583 to 85840594 11 - TSS region transcription start site region 82282
Tssr82283 8 85840608 to 85840642 34 - TSS region transcription start site region 82283
Tssr82284 8 85840734 to 85840780 46 - TSS region transcription start site region 82284
Tssr82285 8 85840782 to 85840794 12 - TSS region transcription start site region 82285
Tssr82286 8 85840877 to 85840957 80 - TSS region transcription start site region 82286
Phkb 8 85840959 to 86061376 220417 + protein coding gene phosphorylase kinase beta
Tssr78565 8 85840971 to 85841028 57 + TSS region transcription start site region 78565
Gm16167 8 85853376 to 85854436 1060 - pseudogene predicted gene 16167
Gm19171 8 85956060 to 85956795 735 - pseudogene predicted gene, 19171
Hm629797 8 85994245 to 85996642 2397 + sense intronic lncRNA gene cDNA sequence HM629797
2010205J10Rik 8 86063340 to 86064249 909 unclassified gene RIKEN cDNA 2010205J10 gene
Tssr78566 8 86064799 to 86064803 4 + TSS region transcription start site region 78566
Gm18474 8 86114535 to 86118504 3969 - pseudogene predicted gene, 18474
Gm21030 8 86146153 to 86147294 1141 - pseudogene predicted gene, 21030
D8Mit347 8 86151668 to 86151842 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 347
Gm33632 8 86158243 to 86212023 53780 + lncRNA gene predicted gene, 33632
Gm33577 8 86208021 to 86211211 3190 - lncRNA gene predicted gene, 33577
Tssr78567 8 86209030 to 86209034 4 + TSS region transcription start site region 78567
Gm23904 8 86233854 to 86233977 123 + snoRNA gene predicted gene, 23904
Gm2641 8 86256555 to 86258369 1814 - pseudogene predicted gene 2641
Gm33687 8 86279797 to 86284080 4283 + lncRNA gene predicted gene, 33687
Tssr78568 8 86286958 to 86286960 2 + TSS region transcription start site region 78568
Gm24490 8 86292501 to 86292598 97 + snRNA gene predicted gene, 24490
Tssr78569 8 86388037 to 86388041 4 + TSS region transcription start site region 78569
Abcc12 8 86504576 to 86580688 76112 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 12
Tssr82287 8 86527683 to 86527729 46 - TSS region transcription start site region 82287
D8Mit150 8 86546828 to 86546964 136 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 150