Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85308079-88468096

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345 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orc6 8 85299632 to 85308278 8646 + protein coding gene origin recognition complex, subunit 6
Gm22336 8 85315140 to 85315246 106 + snRNA gene predicted gene, 22336
Mylk3 8 85324304 to 85386340 62036 - protein coding gene myosin light chain kinase 3
Tssr82253 8 85328014 to 85328019 5 - TSS region transcription start site region 82253
Tssr82254 8 85336398 to 85336442 44 - TSS region transcription start site region 82254
AA672651 8 85339343 to 85340272 929 + antisense lncRNA gene expressed sequence AA672651
Tssr82255 8 85365041 to 85365062 21 - TSS region transcription start site region 82255
Tssr82256 8 85365317 to 85365334 17 - TSS region transcription start site region 82256
Tssr82257 8 85365341 to 85365353 12 - TSS region transcription start site region 82257
Tssr82258 8 85365382 to 85365411 29 - TSS region transcription start site region 82258
Tssr82259 8 85380734 to 85380745 11 - TSS region transcription start site region 82259
Tssr82260 8 85380964 to 85380984 20 - TSS region transcription start site region 82260
Tssr82261 8 85380996 to 85381053 57 - TSS region transcription start site region 82261
Tssr82262 8 85386226 to 85386240 14 - TSS region transcription start site region 82262
Tssr82263 8 85386245 to 85386259 14 - TSS region transcription start site region 82263
Tssr82264 8 85386291 to 85386300 9 - TSS region transcription start site region 82264
Tssr82265 8 85386310 to 85386345 35 - TSS region transcription start site region 82265
Tssr82266 8 85408015 to 85408019 4 - TSS region transcription start site region 82266
4921524J17Rik 8 85408759 to 85432833 24074 - protein coding gene RIKEN cDNA 4921524J17 gene
Gm45594 8 85414275 to 85414515 240 - pseudogene predicted gene 45594
Tssr78549 8 85421572 to 85421585 13 + TSS region transcription start site region 78549
Tssr82267 8 85425695 to 85425699 4 - TSS region transcription start site region 82267
Cpgi20759 8 85432240 to 85433131 891 CpG island CpG island 20759
1700051O22Rik 8 85432686 to 85433323 637 + unclassified gene RIKEN cDNA 1700051O22 Gene
Tssr82268 8 85432754 to 85432763 9 - TSS region transcription start site region 82268
Tssr82269 8 85432769 to 85432836 67 - TSS region transcription start site region 82269
Tssr82270 8 85432843 to 85432859 16 - TSS region transcription start site region 82270
D8Mit327 8 85480531 to 85480652 121 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 327
Cpgi20760 8 85492205 to 85493450 1245 CpG island CpG island 20760
Tssr78550 8 85492475 to 85492490 15 + TSS region transcription start site region 78550
Tssr78551 8 85492568 to 85492626 58 + TSS region transcription start site region 78551
Gpt2 8 85492617 to 85527560 34943 + protein coding gene glutamic pyruvate transaminase (alanine aminotransferase) 2
Tssr78552 8 85492639 to 85492650 11 + TSS region transcription start site region 78552
Tssr78553 8 85492676 to 85492687 11 + TSS region transcription start site region 78553
Tssr78554 8 85492700 to 85492709 9 + TSS region transcription start site region 78554
Tssr78555 8 85509181 to 85509205 24 + TSS region transcription start site region 78555
Tssr78556 8 85515728 to 85515772 44 + TSS region transcription start site region 78556
Tssr78557 8 85515834 to 85515868 34 + TSS region transcription start site region 78557
D8Mit283 8 85516426 to 85516506 80 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 283
Tssr2633 8 85520690 to 85520693 3 + TSS region transcription start site region 2633
Tssr82271 8 85536912 to 85536919 7 - TSS region transcription start site region 82271
Dnaja2 8 85537640 to 85555271 17631 - protein coding gene DnaJ heat shock protein family (Hsp40) member A2
Tssr82272 8 85541875 to 85541879 4 - TSS region transcription start site region 82272
D8Mit366 8 85545036 to 85545239 203 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-366
Tssr82273 8 85548682 to 85548700 18 - TSS region transcription start site region 82273
Tssr82274 8 85550855 to 85550861 6 - TSS region transcription start site region 82274
Tssr82275 8 85553242 to 85553273 31 - TSS region transcription start site region 82275
Cpgi20761 8 85554713 to 85555999 1286 CpG island CpG island 20761
Tssr82276 8 85555261 to 85555315 54 - TSS region transcription start site region 82276
Tssr82277 8 85555317 to 85555374 57 - TSS region transcription start site region 82277
Tssr78558 8 85555453 to 85555500 47 + TSS region transcription start site region 78558
Tssr82278 8 85559435 to 85559439 4 - TSS region transcription start site region 82278
D8Ertd294e 8 85576670 to 85576870 200 DNA segment DNA segment, Chr 8, ERATO Doi 294, expressed
Gm45424 8 85599832 to 85603131 3299 + unclassified gene predicted gene 45424
Tssr78559 8 85602024 to 85602037 13 + TSS region transcription start site region 78559
Tssr78560 8 85602042 to 85602051 9 + TSS region transcription start site region 78560
Tssr78561 8 85602066 to 85602073 7 + TSS region transcription start site region 78561
Gm33367 8 85602712 to 85607270 4558 - lncRNA gene predicted gene, 33367
Gm45425 8 85605462 to 85610761 5299 + lincRNA gene predicted gene 45425
Neto2 8 85636588 to 85700919 64331 - protein coding gene neuropilin (NRP) and tolloid (TLL)-like 2
D8Mit79 8 85662583 to 85662689 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 79
Cpgi20762 8 85700100 to 85701467 1367 CpG island CpG island 20762
Tssr82279 8 85700885 to 85700900 15 - TSS region transcription start site region 82279
Mir8109 8 85700905 to 85701021 116 + miRNA gene microRNA 8109
Tssr82280 8 85700923 to 85700924 1 - TSS region transcription start site region 82280
Tssr78562 8 85700996 to 85701025 29 + TSS region transcription start site region 78562
1500002J14Rik 8 85701073 to 85701825 752 unclassified gene RIKEN cDNA 1500002J14 gene
Itfg1 8 85717578 to 85840921 123343 - protein coding gene integrin alpha FG-GAP repeat containing 1
Tssr78563 8 85730810 to 85730828 18 + TSS region transcription start site region 78563
Gm39214 8 85730816 to 85765095 34279 + lincRNA gene predicted gene, 39214
Tssr82281 8 85760306 to 85760315 9 - TSS region transcription start site region 82281
Tssr78564 8 85824294 to 85824330 36 + TSS region transcription start site region 78564
Atp5k-ps1 8 85824313 to 85824603 290 + pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 1
Cpgi20763 8 85840297 to 85841317 1020 CpG island CpG island 20763
Tssr82282 8 85840583 to 85840594 11 - TSS region transcription start site region 82282
Tssr82283 8 85840608 to 85840642 34 - TSS region transcription start site region 82283
Tssr82284 8 85840734 to 85840780 46 - TSS region transcription start site region 82284
Tssr82285 8 85840782 to 85840794 12 - TSS region transcription start site region 82285
Tssr82286 8 85840877 to 85840957 80 - TSS region transcription start site region 82286
Phkb 8 85840959 to 86061376 220417 + protein coding gene phosphorylase kinase beta
Tssr78565 8 85840971 to 85841028 57 + TSS region transcription start site region 78565
Gm16167 8 85853376 to 85854436 1060 - pseudogene predicted gene 16167
Gm19171 8 85956060 to 85956795 735 - pseudogene predicted gene, 19171
Hm629797 8 85994245 to 85996642 2397 + sense intronic lncRNA gene cDNA sequence HM629797
2010205J10Rik 8 86063340 to 86064249 909 unclassified gene RIKEN cDNA 2010205J10 gene
Tssr78566 8 86064799 to 86064803 4 + TSS region transcription start site region 78566
Gm18474 8 86114535 to 86118504 3969 - pseudogene predicted gene, 18474
Gm21030 8 86146153 to 86147294 1141 - pseudogene predicted gene, 21030
D8Mit347 8 86151668 to 86151842 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 347
Gm33632 8 86158243 to 86212023 53780 + lncRNA gene predicted gene, 33632
Gm33577 8 86208021 to 86211211 3190 - lncRNA gene predicted gene, 33577
Tssr78567 8 86209030 to 86209034 4 + TSS region transcription start site region 78567
Gm23904 8 86233854 to 86233977 123 + snoRNA gene predicted gene, 23904
Gm2641 8 86256555 to 86258369 1814 - pseudogene predicted gene 2641
Gm33687 8 86279797 to 86284080 4283 + lncRNA gene predicted gene, 33687
Tssr78568 8 86286958 to 86286960 2 + TSS region transcription start site region 78568
Gm24490 8 86292501 to 86292598 97 + snRNA gene predicted gene, 24490
Tssr78569 8 86388037 to 86388041 4 + TSS region transcription start site region 78569
Abcc12 8 86504576 to 86580688 76112 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 12
Tssr82287 8 86527683 to 86527729 46 - TSS region transcription start site region 82287
D8Mit150 8 86546828 to 86546964 136 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 150
Tssr82288 8 86580647 to 86580660 13 - TSS region transcription start site region 82288
Tssr82289 8 86580664 to 86580675 11 - TSS region transcription start site region 82289
Gm44348 8 86586962 to 86587083 121 + miRNA gene predicted gene, 44348
Tssr78570 8 86615399 to 86615401 2 + TSS region transcription start site region 78570
D8Mit239 8 86620792 to 86620916 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 239
Cpgi20764 8 86623665 to 86624702 1037 CpG island CpG island 20764
Lonp2 8 86624043 to 86716636 92593 + protein coding gene lon peptidase 2, peroxisomal
Tssr78571 8 86624064 to 86624161 97 + TSS region transcription start site region 78571
Gm16177 8 86659318 to 86660035 717 - pseudogene predicted gene 16177
Gm22305 8 86671236 to 86671343 107 - snRNA gene predicted gene, 22305
Tssr82290 8 86686734 to 86686747 13 - TSS region transcription start site region 82290
Tssr82291 8 86686749 to 86686763 14 - TSS region transcription start site region 82291
Siah1a 8 86724007 to 86745934 21927 - protein coding gene siah E3 ubiquitin protein ligase 1A
Tssr82292 8 86728715 to 86728726 11 - TSS region transcription start site region 82292
Cpgi20765 8 86745071 to 86746782 1711 CpG island CpG island 20765
Tssr78572 8 86745447 to 86745472 25 + TSS region transcription start site region 78572
Tssr78573 8 86745500 to 86745515 15 + TSS region transcription start site region 78573
Tssr78574 8 86745536 to 86745554 18 + TSS region transcription start site region 78574
Tssr78575 8 86745590 to 86745601 11 + TSS region transcription start site region 78575
Tssr78576 8 86745602 to 86745632 30 + TSS region transcription start site region 78576
Tssr78577 8 86745655 to 86745660 5 + TSS region transcription start site region 78577
Tssr78578 8 86745679 to 86745684 5 + TSS region transcription start site region 78578
Gm10638 8 86745699 to 86746603 904 + unclassified gene predicted gene 10638
Tssr82293 8 86745950 to 86746054 104 - TSS region transcription start site region 82293
Tssr82294 8 86746093 to 86746123 30 - TSS region transcription start site region 82294
Cpgi20766 8 86757283 to 86757584 301 CpG island CpG island 20766
Tssr82295 8 86764653 to 86764684 31 - TSS region transcription start site region 82295
Tssr82296 8 86786740 to 86786742 2 - TSS region transcription start site region 82296
Gm39215 8 86805454 to 86826230 20776 - lncRNA gene predicted gene, 39215
Tssr78579 8 86806382 to 86806385 3 + TSS region transcription start site region 78579
N4bp1 8 86841136 to 86885258 44122 - protein coding gene NEDD4 binding protein 1
Tssr82297 8 86841792 to 86841820 28 - TSS region transcription start site region 82297
Gm33877 8 86849296 to 86851618 2322 - lncRNA gene predicted gene, 33877
F830004M19Rik 8 86865499 to 86869522 4023 unclassified non-coding RNA gene RIKEN cDNA F830004M19 gene
Tssr82298 8 86883277 to 86883295 18 - TSS region transcription start site region 82298
Tssr82299 8 86883312 to 86883329 17 - TSS region transcription start site region 82299
Tssr78580 8 86884330 to 86884341 11 + TSS region transcription start site region 78580
Cpgi20767 8 86884350 to 86885500 1150 CpG island CpG island 20767
Tssr78581 8 86884373 to 86884382 9 + TSS region transcription start site region 78581
Tssr82300 8 86884960 to 86885049 89 - TSS region transcription start site region 82300
Tssr78582 8 86885142 to 86885161 19 + TSS region transcription start site region 78582
Tssr82301 8 86885174 to 86885189 15 - TSS region transcription start site region 82301
Tssr82302 8 86885222 to 86885282 60 - TSS region transcription start site region 82302
Tssr82303 8 86885283 to 86885307 24 - TSS region transcription start site region 82303
Tssr82304 8 86885315 to 86885326 11 - TSS region transcription start site region 82304
2010110E17Rik 8 86885688 to 86886566 878 + lincRNA gene RIKEN cDNA 2010110E17 gene
Tssr82305 8 86888079 to 86888096 17 - TSS region transcription start site region 82305
Tssr78583 8 86888401 to 86888419 18 + TSS region transcription start site region 78583
Tssr78584 8 86894023 to 86894027 4 + TSS region transcription start site region 78584
Tssr78585 8 86895128 to 86895138 10 + TSS region transcription start site region 78585
Gm27167 8 86902453 to 86919422 16969 + lincRNA gene predicted gene 27167
Cpgi20768 8 86903202 to 86903397 195 CpG island CpG island 20768
Tssr82306 8 86911268 to 86911278 10 - TSS region transcription start site region 82306
Tssr78586 8 86914781 to 86914788 7 + TSS region transcription start site region 78586
Tssr78587 8 86915072 to 86915093 21 + TSS region transcription start site region 78587
Fth-ps3 8 86915157 to 86915514 357 + pseudogene ferritin heavy chain, pseudogene 3
Tssr78588 8 86915183 to 86915211 28 + TSS region transcription start site region 78588
Gm27168 8 86920477 to 86921147 670 - lincRNA gene predicted gene 27168
Gm33391 8 86922117 to 86926374 4257 + lncRNA gene predicted gene, 33391
Gm24781 8 86965503 to 86965619 116 - snoRNA gene predicted gene, 24781
Cpgi20769 8 87037772 to 87038547 775 CpG island CpG island 20769
Tssr78589 8 87047689 to 87047714 25 + TSS region transcription start site region 78589
Rps13-ps1 8 87047694 to 87048215 521 + pseudogene ribosomal protein S13, pseudogene 1
Gm18602 8 87051397 to 87052247 850 - pseudogene predicted gene, 18602
Gm5118 8 87093307 to 87100987 7680 + lincRNA gene predicted gene 5118
D8Mit348 8 87098639 to 87098837 198 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 348
Tssr78590 8 87101716 to 87101723 7 + TSS region transcription start site region 78590
Gm34025 8 87143147 to 87146335 3188 - lncRNA gene predicted gene, 34025
Gm27246 8 87167735 to 87188911 21176 + lincRNA gene predicted gene 27246
Gm10637 8 87169747 to 87199850 30103 - lincRNA gene predicted gene 10637
Tssr78591 8 87175370 to 87175374 4 + TSS region transcription start site region 78591
Gm39216 8 87196212 to 87198404 2192 + lncRNA gene predicted gene, 39216
Gm27169 8 87203026 to 87293504 90478 + lincRNA gene predicted gene 27169
Tssr78592 8 87218572 to 87218591 19 + TSS region transcription start site region 78592
Tssr82307 8 87233404 to 87233405 1 - TSS region transcription start site region 82307
Gm18975 8 87241585 to 87242303 718 - pseudogene predicted gene, 18975
D8Mit45 8 87305375 to 87305495 120 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 45
Fcsa2 8 87305375 to 87305495 120 QTL femoral cross-sectional area 2
Imraq2 8 87305375 to 87305495 120 QTL immune response to AAV2 QTL 2
Gm27207 8 87354501 to 87373075 18574 - lincRNA gene predicted gene 27207
Gm27208 8 87381059 to 87387551 6492 - unclassified non-coding RNA gene predicted gene 27208
Tssr78593 8 87458427 to 87458447 20 + TSS region transcription start site region 78593
4930535O05Rik 8 87458444 to 87459435 991 + lincRNA gene RIKEN cDNA 4930535O05 gene
Gm19872 8 87460469 to 87463792 3323 + lincRNA gene predicted gene, 19872
Tssr78594 8 87460514 to 87460521 7 + TSS region transcription start site region 78594
Cpgi20770 8 87468748 to 87469691 943 CpG island CpG island 20770
Cbln1 8 87468853 to 87472592 3739 - protein coding gene cerebellin 1 precursor protein
Tssr82308 8 87469905 to 87469922 17 - TSS region transcription start site region 82308
Cpgi20771 8 87469949 to 87471268 1319 CpG island CpG island 20771
Tssr82309 8 87470098 to 87470109 11 - TSS region transcription start site region 82309
Tssr82310 8 87470296 to 87470302 6 - TSS region transcription start site region 82310
Tssr82311 8 87470451 to 87470461 10 - TSS region transcription start site region 82311
Tssr82312 8 87470639 to 87470651 12 - TSS region transcription start site region 82312
Tssr82313 8 87470668 to 87470677 9 - TSS region transcription start site region 82313
Cpgi20772 8 87471595 to 87473706 2111 CpG island CpG island 20772
Tssr82314 8 87472121 to 87472133 12 - TSS region transcription start site region 82314
Tssr82315 8 87472161 to 87472196 35 - TSS region transcription start site region 82315
Tssr82316 8 87472200 to 87472261 61 - TSS region transcription start site region 82316
Tssr82317 8 87472365 to 87472381 16 - TSS region transcription start site region 82317