Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85295971-86386028

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps35 8 85260392 to 85299497 39105 - protein coding gene VPS35 retromer complex component
Cpgi20758 8 85298728 to 85300241 1513 CpG island CpG island 20758
Tssr82251 8 85299483 to 85299535 52 - TSS region transcription start site region 82251
Orc6 8 85299632 to 85308278 8646 + protein coding gene origin recognition complex, subunit 6
Tssr78546 8 85299645 to 85299667 22 + TSS region transcription start site region 78546
Tssr78547 8 85299696 to 85299706 10 + TSS region transcription start site region 78547
Tssr82252 8 85299756 to 85299791 35 - TSS region transcription start site region 82252
Tssr78548 8 85299892 to 85299928 36 + TSS region transcription start site region 78548
Gm22336 8 85315140 to 85315246 106 + snRNA gene predicted gene, 22336
Mylk3 8 85324304 to 85386340 62036 - protein coding gene myosin light chain kinase 3
Tssr82253 8 85328014 to 85328019 5 - TSS region transcription start site region 82253
Tssr82254 8 85336398 to 85336442 44 - TSS region transcription start site region 82254
AA672651 8 85339343 to 85340272 929 + antisense lncRNA gene expressed sequence AA672651
Tssr82255 8 85365041 to 85365062 21 - TSS region transcription start site region 82255
Tssr82256 8 85365317 to 85365334 17 - TSS region transcription start site region 82256
Tssr82257 8 85365341 to 85365353 12 - TSS region transcription start site region 82257
Tssr82258 8 85365382 to 85365411 29 - TSS region transcription start site region 82258
Tssr82259 8 85380734 to 85380745 11 - TSS region transcription start site region 82259
Tssr82260 8 85380964 to 85380984 20 - TSS region transcription start site region 82260
Tssr82261 8 85380996 to 85381053 57 - TSS region transcription start site region 82261
Tssr82262 8 85386226 to 85386240 14 - TSS region transcription start site region 82262
Tssr82263 8 85386245 to 85386259 14 - TSS region transcription start site region 82263
Tssr82264 8 85386291 to 85386300 9 - TSS region transcription start site region 82264
Tssr82265 8 85386310 to 85386345 35 - TSS region transcription start site region 82265
Tssr82266 8 85408015 to 85408019 4 - TSS region transcription start site region 82266
4921524J17Rik 8 85408759 to 85432833 24074 - protein coding gene RIKEN cDNA 4921524J17 gene
Gm45594 8 85414275 to 85414515 240 - pseudogene predicted gene 45594
Tssr78549 8 85421572 to 85421585 13 + TSS region transcription start site region 78549
Tssr82267 8 85425695 to 85425699 4 - TSS region transcription start site region 82267
Cpgi20759 8 85432240 to 85433131 891 CpG island CpG island 20759
1700051O22Rik 8 85432686 to 85433323 637 + unclassified gene RIKEN cDNA 1700051O22 Gene
Tssr82268 8 85432754 to 85432763 9 - TSS region transcription start site region 82268
Tssr82269 8 85432769 to 85432836 67 - TSS region transcription start site region 82269
Tssr82270 8 85432843 to 85432859 16 - TSS region transcription start site region 82270
D8Mit327 8 85480531 to 85480652 121 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 327
Cpgi20760 8 85492205 to 85493450 1245 CpG island CpG island 20760
Tssr78550 8 85492475 to 85492490 15 + TSS region transcription start site region 78550
Tssr78551 8 85492568 to 85492626 58 + TSS region transcription start site region 78551
Gpt2 8 85492617 to 85527560 34943 + protein coding gene glutamic pyruvate transaminase (alanine aminotransferase) 2
Tssr78552 8 85492639 to 85492650 11 + TSS region transcription start site region 78552
Tssr78553 8 85492676 to 85492687 11 + TSS region transcription start site region 78553
Tssr78554 8 85492700 to 85492709 9 + TSS region transcription start site region 78554
Tssr78555 8 85509181 to 85509205 24 + TSS region transcription start site region 78555
Tssr78556 8 85515728 to 85515772 44 + TSS region transcription start site region 78556
Tssr78557 8 85515834 to 85515868 34 + TSS region transcription start site region 78557
D8Mit283 8 85516426 to 85516506 80 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 283
Tssr2633 8 85520690 to 85520693 3 + TSS region transcription start site region 2633
Tssr82271 8 85536912 to 85536919 7 - TSS region transcription start site region 82271
Dnaja2 8 85537640 to 85555271 17631 - protein coding gene DnaJ heat shock protein family (Hsp40) member A2
Tssr82272 8 85541875 to 85541879 4 - TSS region transcription start site region 82272
D8Mit366 8 85545036 to 85545239 203 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-366
Tssr82273 8 85548682 to 85548700 18 - TSS region transcription start site region 82273
Tssr82274 8 85550855 to 85550861 6 - TSS region transcription start site region 82274
Tssr82275 8 85553242 to 85553273 31 - TSS region transcription start site region 82275
Cpgi20761 8 85554713 to 85555999 1286 CpG island CpG island 20761
Tssr82276 8 85555261 to 85555315 54 - TSS region transcription start site region 82276
Tssr82277 8 85555317 to 85555374 57 - TSS region transcription start site region 82277
Tssr78558 8 85555453 to 85555500 47 + TSS region transcription start site region 78558
Tssr82278 8 85559435 to 85559439 4 - TSS region transcription start site region 82278
D8Ertd294e 8 85576670 to 85576870 200 DNA segment DNA segment, Chr 8, ERATO Doi 294, expressed
Gm45424 8 85599832 to 85603131 3299 + unclassified gene predicted gene 45424
Tssr78559 8 85602024 to 85602037 13 + TSS region transcription start site region 78559
Tssr78560 8 85602042 to 85602051 9 + TSS region transcription start site region 78560
Tssr78561 8 85602066 to 85602073 7 + TSS region transcription start site region 78561
Gm33367 8 85602712 to 85607270 4558 - lncRNA gene predicted gene, 33367
Gm45425 8 85605462 to 85610761 5299 + lincRNA gene predicted gene 45425
Neto2 8 85636588 to 85700919 64331 - protein coding gene neuropilin (NRP) and tolloid (TLL)-like 2
D8Mit79 8 85662583 to 85662689 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 79
Cpgi20762 8 85700100 to 85701467 1367 CpG island CpG island 20762
Tssr82279 8 85700885 to 85700900 15 - TSS region transcription start site region 82279
Mir8109 8 85700905 to 85701021 116 + miRNA gene microRNA 8109
Tssr82280 8 85700923 to 85700924 1 - TSS region transcription start site region 82280
Tssr78562 8 85700996 to 85701025 29 + TSS region transcription start site region 78562
1500002J14Rik 8 85701073 to 85701825 752 unclassified gene RIKEN cDNA 1500002J14 gene
Itfg1 8 85717578 to 85840921 123343 - protein coding gene integrin alpha FG-GAP repeat containing 1
Tssr78563 8 85730810 to 85730828 18 + TSS region transcription start site region 78563
Gm39214 8 85730816 to 85765095 34279 + lincRNA gene predicted gene, 39214
Tssr82281 8 85760306 to 85760315 9 - TSS region transcription start site region 82281
Tssr78564 8 85824294 to 85824330 36 + TSS region transcription start site region 78564
Atp5k-ps1 8 85824313 to 85824603 290 + pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 1
Cpgi20763 8 85840297 to 85841317 1020 CpG island CpG island 20763
Tssr82282 8 85840583 to 85840594 11 - TSS region transcription start site region 82282
Tssr82283 8 85840608 to 85840642 34 - TSS region transcription start site region 82283
Tssr82284 8 85840734 to 85840780 46 - TSS region transcription start site region 82284
Tssr82285 8 85840782 to 85840794 12 - TSS region transcription start site region 82285
Tssr82286 8 85840877 to 85840957 80 - TSS region transcription start site region 82286
Phkb 8 85840959 to 86061376 220417 + protein coding gene phosphorylase kinase beta
Tssr78565 8 85840971 to 85841028 57 + TSS region transcription start site region 78565
Gm16167 8 85853376 to 85854436 1060 - pseudogene predicted gene 16167
Gm19171 8 85956060 to 85956795 735 - pseudogene predicted gene, 19171
Hm629797 8 85994245 to 85996642 2397 + sense intronic lncRNA gene cDNA sequence HM629797
2010205J10Rik 8 86063340 to 86064249 909 unclassified gene RIKEN cDNA 2010205J10 gene
Tssr78566 8 86064799 to 86064803 4 + TSS region transcription start site region 78566
Gm18474 8 86114535 to 86118504 3969 - pseudogene predicted gene, 18474
Gm21030 8 86146153 to 86147294 1141 - pseudogene predicted gene, 21030
D8Mit347 8 86151668 to 86151842 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 347
Gm33632 8 86158243 to 86212023 53780 + lncRNA gene predicted gene, 33632
Gm33577 8 86208021 to 86211211 3190 - lncRNA gene predicted gene, 33577
Tssr78567 8 86209030 to 86209034 4 + TSS region transcription start site region 78567
Gm23904 8 86233854 to 86233977 123 + snoRNA gene predicted gene, 23904
Gm2641 8 86256555 to 86258369 1814 - pseudogene predicted gene 2641
Gm33687 8 86279797 to 86284080 4283 + lncRNA gene predicted gene, 33687
Tssr78568 8 86286958 to 86286960 2 + TSS region transcription start site region 78568
Gm24490 8 86292501 to 86292598 97 + snRNA gene predicted gene, 24490