Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85081395-85491416

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wdr83os 8 85080963 to 85082339 1376 + protein coding gene WD repeat domain 83 opposite strand
Tssr78525 8 85081425 to 85081468 43 + TSS region transcription start site region 78525
Cpgi20754 8 85083131 to 85083587 456 CpG island CpG island 20754
Tssr78526 8 85083269 to 85083297 28 + TSS region transcription start site region 78526
Man2b1 8 85083270 to 85098282 15012 + protein coding gene mannosidase 2, alpha B1
Tssr78527 8 85083303 to 85083323 20 + TSS region transcription start site region 78527
Tssr78528 8 85083443 to 85083447 4 + TSS region transcription start site region 78528
Tssr78529 8 85084388 to 85084412 24 + TSS region transcription start site region 78529
Tssr78530 8 85084415 to 85084456 41 + TSS region transcription start site region 78530
Tssr78531 8 85084698 to 85084767 69 + TSS region transcription start site region 78531
Tssr78532 8 85085411 to 85085423 12 + TSS region transcription start site region 78532
Tssr78533 8 85085432 to 85085449 17 + TSS region transcription start site region 78533
Tssr78534 8 85085466 to 85085519 53 + TSS region transcription start site region 78534
Tssr78535 8 85086808 to 85086844 36 + TSS region transcription start site region 78535
Tssr78536 8 85086882 to 85086922 40 + TSS region transcription start site region 78536
Tssr78537 8 85087177 to 85087204 27 + TSS region transcription start site region 78537
Tssr78538 8 85087212 to 85087225 13 + TSS region transcription start site region 78538
Tssr82245 8 85087217 to 85087240 23 - TSS region transcription start site region 82245
Tssr78539 8 85087240 to 85087252 12 + TSS region transcription start site region 78539
Tssr78540 8 85090917 to 85090952 35 + TSS region transcription start site region 78540
Tssr78541 8 85091091 to 85091131 40 + TSS region transcription start site region 78541
Cpgi20755 8 85091726 to 85091986 260 CpG island CpG island 20755
Tssr78542 8 85095333 to 85095351 18 + TSS region transcription start site region 78542
Tssr78543 8 85096763 to 85096782 19 + TSS region transcription start site region 78543
Zfp791 8 85108553 to 85123095 14542 - protein coding gene zinc finger protein 791
Cpgi20756 8 85109922 to 85110517 595 CpG island CpG island 20756
Gm23388 8 85112012 to 85112068 56 - miRNA gene predicted gene, 23388
Tssr82246 8 85112110 to 85112120 10 - TSS region transcription start site region 82246
Cpgi20757 8 85119351 to 85119751 400 CpG island CpG island 20757
Tssr82247 8 85119679 to 85119694 15 - TSS region transcription start site region 82247
Gm45317 8 85122728 to 85122950 222 + pseudogene predicted gene 45317
Gm42031 8 85126736 to 85128627 1891 - lincRNA gene predicted gene, 42031
Gm45316 8 85135765 to 85135926 161 + pseudogene predicted gene 45316
Cks1brt 8 85151924 to 85173622 21698 + protein coding gene CDC28 protein kinase 1b, retrogene
Gm33296 8 85152065 to 85159145 7080 - lncRNA gene predicted gene, 33296
Gm18137 8 85154218 to 85154923 705 - pseudogene predicted gene, 18137
Tssr78544 8 85171523 to 85171526 3 + TSS region transcription start site region 78544
Tssr82248 8 85220567 to 85220593 26 - TSS region transcription start site region 82248
Tssr78545 8 85221481 to 85221486 5 + TSS region transcription start site region 78545
Olfr371 8 85230497 to 85231435 938 + protein coding gene olfactory receptor 371
Vps35 8 85260392 to 85299497 39105 - protein coding gene VPS35 retromer complex component
Tssr82249 8 85261077 to 85261092 15 - TSS region transcription start site region 82249
Tssr82250 8 85286395 to 85286416 21 - TSS region transcription start site region 82250
Cpgi20758 8 85298728 to 85300241 1513 CpG island CpG island 20758
Tssr82251 8 85299483 to 85299535 52 - TSS region transcription start site region 82251
Orc6 8 85299632 to 85308278 8646 + protein coding gene origin recognition complex, subunit 6
Tssr78546 8 85299645 to 85299667 22 + TSS region transcription start site region 78546
Tssr78547 8 85299696 to 85299706 10 + TSS region transcription start site region 78547
Tssr82252 8 85299756 to 85299791 35 - TSS region transcription start site region 82252
Tssr78548 8 85299892 to 85299928 36 + TSS region transcription start site region 78548
Gm22336 8 85315140 to 85315246 106 + snRNA gene predicted gene, 22336
Mylk3 8 85324304 to 85386340 62036 - protein coding gene myosin light chain kinase 3
Tssr82253 8 85328014 to 85328019 5 - TSS region transcription start site region 82253
Tssr82254 8 85336398 to 85336442 44 - TSS region transcription start site region 82254
AA672651 8 85339343 to 85340272 929 + antisense lncRNA gene expressed sequence AA672651
Tssr82255 8 85365041 to 85365062 21 - TSS region transcription start site region 82255
Tssr82256 8 85365317 to 85365334 17 - TSS region transcription start site region 82256
Tssr82257 8 85365341 to 85365353 12 - TSS region transcription start site region 82257
Tssr82258 8 85365382 to 85365411 29 - TSS region transcription start site region 82258
Tssr82259 8 85380734 to 85380745 11 - TSS region transcription start site region 82259
Tssr82260 8 85380964 to 85380984 20 - TSS region transcription start site region 82260
Tssr82261 8 85380996 to 85381053 57 - TSS region transcription start site region 82261
Tssr82262 8 85386226 to 85386240 14 - TSS region transcription start site region 82262
Tssr82263 8 85386245 to 85386259 14 - TSS region transcription start site region 82263
Tssr82264 8 85386291 to 85386300 9 - TSS region transcription start site region 82264
Tssr82265 8 85386310 to 85386345 35 - TSS region transcription start site region 82265
Tssr82266 8 85408015 to 85408019 4 - TSS region transcription start site region 82266
4921524J17Rik 8 85408759 to 85432833 24074 - protein coding gene RIKEN cDNA 4921524J17 gene
Gm45594 8 85414275 to 85414515 240 - pseudogene predicted gene 45594
Tssr78549 8 85421572 to 85421585 13 + TSS region transcription start site region 78549
Tssr82267 8 85425695 to 85425699 4 - TSS region transcription start site region 82267
Cpgi20759 8 85432240 to 85433131 891 CpG island CpG island 20759
1700051O22Rik 8 85432686 to 85433323 637 + unclassified gene RIKEN cDNA 1700051O22 Gene
Tssr82268 8 85432754 to 85432763 9 - TSS region transcription start site region 82268
Tssr82269 8 85432769 to 85432836 67 - TSS region transcription start site region 82269
Tssr82270 8 85432843 to 85432859 16 - TSS region transcription start site region 82270
D8Mit327 8 85480531 to 85480652 121 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 327