Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85012617-86007560

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Best2 8 85007202 to 85014531 7329 - protein coding gene bestrophin 2
Cpgi20747 8 85013205 to 85013671 466 CpG island CpG island 20747
Asna1 8 85017931 to 85025278 7347 - protein coding gene arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tssr82234 8 85019565 to 85019580 15 - TSS region transcription start site region 82234
Tssr82235 8 85019871 to 85019893 22 - TSS region transcription start site region 82235
Tssr78510 8 85021975 to 85021994 19 + TSS region transcription start site region 78510
Cpgi20748 8 85024831 to 85025246 415 CpG island CpG island 20748
Tssr82236 8 85025231 to 85025238 7 - TSS region transcription start site region 82236
Tssr82237 8 85025268 to 85025296 28 - TSS region transcription start site region 82237
Tssr78511 8 85025640 to 85025649 9 + TSS region transcription start site region 78511
Cpgi20749 8 85026553 to 85027730 1177 CpG island CpG island 20749
Trir 8 85026823 to 85030286 3463 + protein coding gene telomerase RNA component interacting RNase
Tssr78512 8 85026851 to 85026899 48 + TSS region transcription start site region 78512
Cpgi20750 8 85036674 to 85038680 2006 CpG island CpG island 20750
Tssr82238 8 85036678 to 85036734 56 - TSS region transcription start site region 82238
Tssr78513 8 85036886 to 85036902 16 + TSS region transcription start site region 78513
Tssr78514 8 85036906 to 85036925 19 + TSS region transcription start site region 78514
Tnpo2 8 85036915 to 85057583 20668 + protein coding gene transportin 2 (importin 3, karyopherin beta 2b)
Tssr78515 8 85036926 to 85036937 11 + TSS region transcription start site region 78515
Tssr78516 8 85037151 to 85037210 59 + TSS region transcription start site region 78516
Tssr78517 8 85037214 to 85037227 13 + TSS region transcription start site region 78517
Gm25506 8 85050207 to 85050276 69 + snoRNA gene predicted gene, 25506
A230103J11Rik 8 85053160 to 85060460 7300 - lncRNA gene RIKEN cDNA A230103J11 gene
Tssr78518 8 85057222 to 85057268 46 + TSS region transcription start site region 78518
Cpgi20751 8 85059982 to 85060717 735 CpG island CpG island 20751
Fbxw9 8 85060055 to 85067124 7069 + protein coding gene F-box and WD-40 domain protein 9
Tssr78519 8 85060063 to 85060135 72 + TSS region transcription start site region 78519
Tssr2632 8 85060420 to 85060437 17 - TSS region transcription start site region 2632
Tssr82239 8 85060438 to 85060468 30 - TSS region transcription start site region 82239
Mir7070 8 85062086 to 85062171 85 + miRNA gene microRNA 7070
Gm5741 8 85067568 to 85067982 414 - protein coding gene predicted gene 5741
Cpgi20752 8 85071511 to 85072489 978 CpG island CpG island 20752
Tssr78520 8 85071720 to 85071734 14 + TSS region transcription start site region 78520
Tssr78521 8 85071737 to 85071769 32 + TSS region transcription start site region 78521
Dhps 8 85071757 to 85075162 3405 + protein coding gene deoxyhypusine synthase
Tssr78522 8 85071770 to 85071794 24 + TSS region transcription start site region 78522
Tssr82240 8 85072075 to 85072086 11 - TSS region transcription start site region 82240
Tssr82241 8 85072102 to 85072125 23 - TSS region transcription start site region 82241
Wdr83 8 85075035 to 85080746 5711 - protein coding gene WD repeat domain containing 83
Cpgi20753 8 85079933 to 85080711 778 CpG island CpG island 20753
Tssr82242 8 85080652 to 85080668 16 - TSS region transcription start site region 82242
Tssr82243 8 85080679 to 85080721 42 - TSS region transcription start site region 82243
Tssr78523 8 85080849 to 85080854 5 + TSS region transcription start site region 78523
Tssr78524 8 85080939 to 85080977 38 + TSS region transcription start site region 78524
Wdr83os 8 85080963 to 85082339 1376 + protein coding gene WD repeat domain 83 opposite strand
Tssr82244 8 85081319 to 85081350 31 - TSS region transcription start site region 82244
Tssr78525 8 85081425 to 85081468 43 + TSS region transcription start site region 78525
Cpgi20754 8 85083131 to 85083587 456 CpG island CpG island 20754
Tssr78526 8 85083269 to 85083297 28 + TSS region transcription start site region 78526
Man2b1 8 85083270 to 85098282 15012 + protein coding gene mannosidase 2, alpha B1
Tssr78527 8 85083303 to 85083323 20 + TSS region transcription start site region 78527
Tssr78528 8 85083443 to 85083447 4 + TSS region transcription start site region 78528
Tssr78529 8 85084388 to 85084412 24 + TSS region transcription start site region 78529
Tssr78530 8 85084415 to 85084456 41 + TSS region transcription start site region 78530
Tssr78531 8 85084698 to 85084767 69 + TSS region transcription start site region 78531
Tssr78532 8 85085411 to 85085423 12 + TSS region transcription start site region 78532
Tssr78533 8 85085432 to 85085449 17 + TSS region transcription start site region 78533
Tssr78534 8 85085466 to 85085519 53 + TSS region transcription start site region 78534
Tssr78535 8 85086808 to 85086844 36 + TSS region transcription start site region 78535
Tssr78536 8 85086882 to 85086922 40 + TSS region transcription start site region 78536
Tssr78537 8 85087177 to 85087204 27 + TSS region transcription start site region 78537
Tssr78538 8 85087212 to 85087225 13 + TSS region transcription start site region 78538
Tssr82245 8 85087217 to 85087240 23 - TSS region transcription start site region 82245
Tssr78539 8 85087240 to 85087252 12 + TSS region transcription start site region 78539
Tssr78540 8 85090917 to 85090952 35 + TSS region transcription start site region 78540
Tssr78541 8 85091091 to 85091131 40 + TSS region transcription start site region 78541
Cpgi20755 8 85091726 to 85091986 260 CpG island CpG island 20755
Tssr78542 8 85095333 to 85095351 18 + TSS region transcription start site region 78542
Tssr78543 8 85096763 to 85096782 19 + TSS region transcription start site region 78543
Zfp791 8 85108553 to 85123095 14542 - protein coding gene zinc finger protein 791
Cpgi20756 8 85109922 to 85110517 595 CpG island CpG island 20756
Gm23388 8 85112012 to 85112068 56 - miRNA gene predicted gene, 23388
Tssr82246 8 85112110 to 85112120 10 - TSS region transcription start site region 82246
Cpgi20757 8 85119351 to 85119751 400 CpG island CpG island 20757
Tssr82247 8 85119679 to 85119694 15 - TSS region transcription start site region 82247
Gm45317 8 85122728 to 85122950 222 + pseudogene predicted gene 45317
Gm42031 8 85126736 to 85128627 1891 - lincRNA gene predicted gene, 42031
Gm45316 8 85135765 to 85135926 161 + pseudogene predicted gene 45316
Cks1brt 8 85151924 to 85173622 21698 + protein coding gene CDC28 protein kinase 1b, retrogene
Gm33296 8 85152065 to 85159145 7080 - lncRNA gene predicted gene, 33296
Gm18137 8 85154218 to 85154923 705 - pseudogene predicted gene, 18137
Tssr78544 8 85171523 to 85171526 3 + TSS region transcription start site region 78544
Tssr82248 8 85220567 to 85220593 26 - TSS region transcription start site region 82248
Tssr78545 8 85221481 to 85221486 5 + TSS region transcription start site region 78545
Olfr371 8 85230497 to 85231435 938 + protein coding gene olfactory receptor 371
Vps35 8 85260392 to 85299497 39105 - protein coding gene VPS35 retromer complex component
Tssr82249 8 85261077 to 85261092 15 - TSS region transcription start site region 82249
Tssr82250 8 85286395 to 85286416 21 - TSS region transcription start site region 82250
Cpgi20758 8 85298728 to 85300241 1513 CpG island CpG island 20758
Tssr82251 8 85299483 to 85299535 52 - TSS region transcription start site region 82251
Orc6 8 85299632 to 85308278 8646 + protein coding gene origin recognition complex, subunit 6
Tssr78546 8 85299645 to 85299667 22 + TSS region transcription start site region 78546
Tssr78547 8 85299696 to 85299706 10 + TSS region transcription start site region 78547
Tssr82252 8 85299756 to 85299791 35 - TSS region transcription start site region 82252
Tssr78548 8 85299892 to 85299928 36 + TSS region transcription start site region 78548
Gm22336 8 85315140 to 85315246 106 + snRNA gene predicted gene, 22336
Mylk3 8 85324304 to 85386340 62036 - protein coding gene myosin light chain kinase 3
Tssr82253 8 85328014 to 85328019 5 - TSS region transcription start site region 82253
Tssr82254 8 85336398 to 85336442 44 - TSS region transcription start site region 82254
AA672651 8 85339343 to 85340272 929 + antisense lncRNA gene expressed sequence AA672651
Tssr82255 8 85365041 to 85365062 21 - TSS region transcription start site region 82255
Tssr82256 8 85365317 to 85365334 17 - TSS region transcription start site region 82256
Tssr82257 8 85365341 to 85365353 12 - TSS region transcription start site region 82257
Tssr82258 8 85365382 to 85365411 29 - TSS region transcription start site region 82258
Tssr82259 8 85380734 to 85380745 11 - TSS region transcription start site region 82259
Tssr82260 8 85380964 to 85380984 20 - TSS region transcription start site region 82260
Tssr82261 8 85380996 to 85381053 57 - TSS region transcription start site region 82261
Tssr82262 8 85386226 to 85386240 14 - TSS region transcription start site region 82262
Tssr82263 8 85386245 to 85386259 14 - TSS region transcription start site region 82263
Tssr82264 8 85386291 to 85386300 9 - TSS region transcription start site region 82264
Tssr82265 8 85386310 to 85386345 35 - TSS region transcription start site region 82265
Tssr82266 8 85408015 to 85408019 4 - TSS region transcription start site region 82266
4921524J17Rik 8 85408759 to 85432833 24074 - protein coding gene RIKEN cDNA 4921524J17 gene
Gm45594 8 85414275 to 85414515 240 - pseudogene predicted gene 45594
Tssr78549 8 85421572 to 85421585 13 + TSS region transcription start site region 78549
Tssr82267 8 85425695 to 85425699 4 - TSS region transcription start site region 82267
Cpgi20759 8 85432240 to 85433131 891 CpG island CpG island 20759
1700051O22Rik 8 85432686 to 85433323 637 + unclassified gene RIKEN cDNA 1700051O22 Gene
Tssr82268 8 85432754 to 85432763 9 - TSS region transcription start site region 82268
Tssr82269 8 85432769 to 85432836 67 - TSS region transcription start site region 82269
Tssr82270 8 85432843 to 85432859 16 - TSS region transcription start site region 82270
D8Mit327 8 85480531 to 85480652 121 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 327
Cpgi20760 8 85492205 to 85493450 1245 CpG island CpG island 20760
Tssr78550 8 85492475 to 85492490 15 + TSS region transcription start site region 78550
Tssr78551 8 85492568 to 85492626 58 + TSS region transcription start site region 78551
Gpt2 8 85492617 to 85527560 34943 + protein coding gene glutamic pyruvate transaminase (alanine aminotransferase) 2
Tssr78552 8 85492639 to 85492650 11 + TSS region transcription start site region 78552
Tssr78553 8 85492676 to 85492687 11 + TSS region transcription start site region 78553
Tssr78554 8 85492700 to 85492709 9 + TSS region transcription start site region 78554
Tssr78555 8 85509181 to 85509205 24 + TSS region transcription start site region 78555
Tssr78556 8 85515728 to 85515772 44 + TSS region transcription start site region 78556
Tssr78557 8 85515834 to 85515868 34 + TSS region transcription start site region 78557
D8Mit283 8 85516426 to 85516506 80 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 283
Tssr2633 8 85520690 to 85520693 3 + TSS region transcription start site region 2633
Tssr82271 8 85536912 to 85536919 7 - TSS region transcription start site region 82271
Dnaja2 8 85537640 to 85555271 17631 - protein coding gene DnaJ heat shock protein family (Hsp40) member A2
Tssr82272 8 85541875 to 85541879 4 - TSS region transcription start site region 82272
D8Mit366 8 85545036 to 85545239 203 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-366
Tssr82273 8 85548682 to 85548700 18 - TSS region transcription start site region 82273
Tssr82274 8 85550855 to 85550861 6 - TSS region transcription start site region 82274
Tssr82275 8 85553242 to 85553273 31 - TSS region transcription start site region 82275
Cpgi20761 8 85554713 to 85555999 1286 CpG island CpG island 20761
Tssr82276 8 85555261 to 85555315 54 - TSS region transcription start site region 82276
Tssr82277 8 85555317 to 85555374 57 - TSS region transcription start site region 82277
Tssr78558 8 85555453 to 85555500 47 + TSS region transcription start site region 78558
Tssr82278 8 85559435 to 85559439 4 - TSS region transcription start site region 82278
D8Ertd294e 8 85576670 to 85576870 200 DNA segment DNA segment, Chr 8, ERATO Doi 294, expressed
Gm45424 8 85599832 to 85603131 3299 + unclassified gene predicted gene 45424
Tssr78559 8 85602024 to 85602037 13 + TSS region transcription start site region 78559
Tssr78560 8 85602042 to 85602051 9 + TSS region transcription start site region 78560
Tssr78561 8 85602066 to 85602073 7 + TSS region transcription start site region 78561
Gm33367 8 85602712 to 85607270 4558 - lncRNA gene predicted gene, 33367
Gm45425 8 85605462 to 85610761 5299 + lincRNA gene predicted gene 45425
Neto2 8 85636588 to 85700919 64331 - protein coding gene neuropilin (NRP) and tolloid (TLL)-like 2
D8Mit79 8 85662583 to 85662689 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 79
Cpgi20762 8 85700100 to 85701467 1367 CpG island CpG island 20762
Tssr82279 8 85700885 to 85700900 15 - TSS region transcription start site region 82279
Mir8109 8 85700905 to 85701021 116 + miRNA gene microRNA 8109
Tssr82280 8 85700923 to 85700924 1 - TSS region transcription start site region 82280
Tssr78562 8 85700996 to 85701025 29 + TSS region transcription start site region 78562
1500002J14Rik 8 85701073 to 85701825 752 unclassified gene RIKEN cDNA 1500002J14 gene
Itfg1 8 85717578 to 85840921 123343 - protein coding gene integrin alpha FG-GAP repeat containing 1
Tssr78563 8 85730810 to 85730828 18 + TSS region transcription start site region 78563
Gm39214 8 85730816 to 85765095 34279 + lincRNA gene predicted gene, 39214
Tssr82281 8 85760306 to 85760315 9 - TSS region transcription start site region 82281
Tssr78564 8 85824294 to 85824330 36 + TSS region transcription start site region 78564
Atp5k-ps1 8 85824313 to 85824603 290 + pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 1
Cpgi20763 8 85840297 to 85841317 1020 CpG island CpG island 20763
Tssr82282 8 85840583 to 85840594 11 - TSS region transcription start site region 82282
Tssr82283 8 85840608 to 85840642 34 - TSS region transcription start site region 82283
Tssr82284 8 85840734 to 85840780 46 - TSS region transcription start site region 82284
Tssr82285 8 85840782 to 85840794 12 - TSS region transcription start site region 82285
Tssr82286 8 85840877 to 85840957 80 - TSS region transcription start site region 82286
Phkb 8 85840959 to 86061376 220417 + protein coding gene phosphorylase kinase beta
Tssr78565 8 85840971 to 85841028 57 + TSS region transcription start site region 78565
Gm16167 8 85853376 to 85854436 1060 - pseudogene predicted gene 16167
Gm19171 8 85956060 to 85956795 735 - pseudogene predicted gene, 19171
Hm629797 8 85994245 to 85996642 2397 + sense intronic lncRNA gene cDNA sequence HM629797