Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:85003303-85163323

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hook2 8 84990603 to 85003349 12746 + protein coding gene hook microtubule tethering protein 2
Best2 8 85007202 to 85014531 7329 - protein coding gene bestrophin 2
Cpgi20744 8 85007609 to 85008050 441 CpG island CpG island 20744
Cpgi20745 8 85009201 to 85009425 224 CpG island CpG island 20745
Cpgi20746 8 85011066 to 85011844 778 CpG island CpG island 20746
Cpgi20747 8 85013205 to 85013671 466 CpG island CpG island 20747
Asna1 8 85017931 to 85025278 7347 - protein coding gene arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tssr82234 8 85019565 to 85019580 15 - TSS region transcription start site region 82234
Tssr82235 8 85019871 to 85019893 22 - TSS region transcription start site region 82235
Tssr78510 8 85021975 to 85021994 19 + TSS region transcription start site region 78510
Cpgi20748 8 85024831 to 85025246 415 CpG island CpG island 20748
Tssr82236 8 85025231 to 85025238 7 - TSS region transcription start site region 82236
Tssr82237 8 85025268 to 85025296 28 - TSS region transcription start site region 82237
Tssr78511 8 85025640 to 85025649 9 + TSS region transcription start site region 78511
Cpgi20749 8 85026553 to 85027730 1177 CpG island CpG island 20749
Trir 8 85026823 to 85030286 3463 + protein coding gene telomerase RNA component interacting RNase
Tssr78512 8 85026851 to 85026899 48 + TSS region transcription start site region 78512
Cpgi20750 8 85036674 to 85038680 2006 CpG island CpG island 20750
Tssr82238 8 85036678 to 85036734 56 - TSS region transcription start site region 82238
Tssr78513 8 85036886 to 85036902 16 + TSS region transcription start site region 78513
Tssr78514 8 85036906 to 85036925 19 + TSS region transcription start site region 78514
Tnpo2 8 85036915 to 85057583 20668 + protein coding gene transportin 2 (importin 3, karyopherin beta 2b)
Tssr78515 8 85036926 to 85036937 11 + TSS region transcription start site region 78515
Tssr78516 8 85037151 to 85037210 59 + TSS region transcription start site region 78516
Tssr78517 8 85037214 to 85037227 13 + TSS region transcription start site region 78517
Gm25506 8 85050207 to 85050276 69 + snoRNA gene predicted gene, 25506
A230103J11Rik 8 85053160 to 85060460 7300 - lncRNA gene RIKEN cDNA A230103J11 gene
Tssr78518 8 85057222 to 85057268 46 + TSS region transcription start site region 78518
Cpgi20751 8 85059982 to 85060717 735 CpG island CpG island 20751
Fbxw9 8 85060055 to 85067124 7069 + protein coding gene F-box and WD-40 domain protein 9
Tssr78519 8 85060063 to 85060135 72 + TSS region transcription start site region 78519
Tssr2632 8 85060420 to 85060437 17 - TSS region transcription start site region 2632
Tssr82239 8 85060438 to 85060468 30 - TSS region transcription start site region 82239
Mir7070 8 85062086 to 85062171 85 + miRNA gene microRNA 7070
Gm5741 8 85067568 to 85067982 414 - protein coding gene predicted gene 5741
Cpgi20752 8 85071511 to 85072489 978 CpG island CpG island 20752
Tssr78520 8 85071720 to 85071734 14 + TSS region transcription start site region 78520
Tssr78521 8 85071737 to 85071769 32 + TSS region transcription start site region 78521
Dhps 8 85071757 to 85075162 3405 + protein coding gene deoxyhypusine synthase
Tssr78522 8 85071770 to 85071794 24 + TSS region transcription start site region 78522
Tssr82240 8 85072075 to 85072086 11 - TSS region transcription start site region 82240
Tssr82241 8 85072102 to 85072125 23 - TSS region transcription start site region 82241
Wdr83 8 85075035 to 85080746 5711 - protein coding gene WD repeat domain containing 83
Cpgi20753 8 85079933 to 85080711 778 CpG island CpG island 20753
Tssr82242 8 85080652 to 85080668 16 - TSS region transcription start site region 82242
Tssr82243 8 85080679 to 85080721 42 - TSS region transcription start site region 82243
Tssr78523 8 85080849 to 85080854 5 + TSS region transcription start site region 78523
Tssr78524 8 85080939 to 85080977 38 + TSS region transcription start site region 78524
Wdr83os 8 85080963 to 85082339 1376 + protein coding gene WD repeat domain 83 opposite strand
Tssr82244 8 85081319 to 85081350 31 - TSS region transcription start site region 82244
Tssr78525 8 85081425 to 85081468 43 + TSS region transcription start site region 78525
Cpgi20754 8 85083131 to 85083587 456 CpG island CpG island 20754
Tssr78526 8 85083269 to 85083297 28 + TSS region transcription start site region 78526
Man2b1 8 85083270 to 85098282 15012 + protein coding gene mannosidase 2, alpha B1
Tssr78527 8 85083303 to 85083323 20 + TSS region transcription start site region 78527
Tssr78528 8 85083443 to 85083447 4 + TSS region transcription start site region 78528
Tssr78529 8 85084388 to 85084412 24 + TSS region transcription start site region 78529
Tssr78530 8 85084415 to 85084456 41 + TSS region transcription start site region 78530
Tssr78531 8 85084698 to 85084767 69 + TSS region transcription start site region 78531
Tssr78532 8 85085411 to 85085423 12 + TSS region transcription start site region 78532
Tssr78533 8 85085432 to 85085449 17 + TSS region transcription start site region 78533
Tssr78534 8 85085466 to 85085519 53 + TSS region transcription start site region 78534
Tssr78535 8 85086808 to 85086844 36 + TSS region transcription start site region 78535
Tssr78536 8 85086882 to 85086922 40 + TSS region transcription start site region 78536
Tssr78537 8 85087177 to 85087204 27 + TSS region transcription start site region 78537
Tssr78538 8 85087212 to 85087225 13 + TSS region transcription start site region 78538
Tssr82245 8 85087217 to 85087240 23 - TSS region transcription start site region 82245
Tssr78539 8 85087240 to 85087252 12 + TSS region transcription start site region 78539
Tssr78540 8 85090917 to 85090952 35 + TSS region transcription start site region 78540
Tssr78541 8 85091091 to 85091131 40 + TSS region transcription start site region 78541
Cpgi20755 8 85091726 to 85091986 260 CpG island CpG island 20755
Tssr78542 8 85095333 to 85095351 18 + TSS region transcription start site region 78542
Tssr78543 8 85096763 to 85096782 19 + TSS region transcription start site region 78543
Zfp791 8 85108553 to 85123095 14542 - protein coding gene zinc finger protein 791
Cpgi20756 8 85109922 to 85110517 595 CpG island CpG island 20756
Gm23388 8 85112012 to 85112068 56 - miRNA gene predicted gene, 23388
Tssr82246 8 85112110 to 85112120 10 - TSS region transcription start site region 82246
Cpgi20757 8 85119351 to 85119751 400 CpG island CpG island 20757
Tssr82247 8 85119679 to 85119694 15 - TSS region transcription start site region 82247
Gm45317 8 85122728 to 85122950 222 + pseudogene predicted gene 45317
Gm42031 8 85126736 to 85128627 1891 - lincRNA gene predicted gene, 42031
Gm45316 8 85135765 to 85135926 161 + pseudogene predicted gene 45316
Cks1brt 8 85151924 to 85173622 21698 + protein coding gene CDC28 protein kinase 1b, retrogene
Gm33296 8 85152065 to 85159145 7080 - lncRNA gene predicted gene, 33296
Gm18137 8 85154218 to 85154923 705 - pseudogene predicted gene, 18137