Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84980640-85070649

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr82226 8 84980997 to 84981036 39 - TSS region transcription start site region 82226
Tssr82227 8 84981054 to 84981076 22 - TSS region transcription start site region 82227
Tssr82228 8 84985337 to 84985344 7 - TSS region transcription start site region 82228
Cpgi20740 8 84985492 to 84986586 1094 CpG island CpG island 20740
Tssr82229 8 84985807 to 84985844 37 - TSS region transcription start site region 82229
Tssr82230 8 84986066 to 84986080 14 - TSS region transcription start site region 82230
Tssr82231 8 84986146 to 84986219 73 - TSS region transcription start site region 82231
Tssr78502 8 84986344 to 84986353 9 + TSS region transcription start site region 78502
Tssr78503 8 84986363 to 84986380 17 + TSS region transcription start site region 78503
Tssr78504 8 84986447 to 84986461 14 + TSS region transcription start site region 78504
Cpgi20741 8 84990376 to 84991102 726 CpG island CpG island 20741
Tssr78505 8 84990585 to 84990649 64 + TSS region transcription start site region 78505
Hook2 8 84990603 to 85003349 12746 + protein coding gene hook microtubule tethering protein 2
Tssr82232 8 84990870 to 84990901 31 - TSS region transcription start site region 82232
Tssr82233 8 84990911 to 84990927 16 - TSS region transcription start site region 82233
Cpgi20742 8 84995737 to 84996141 404 CpG island CpG island 20742
Tssr78506 8 84995940 to 84995973 33 + TSS region transcription start site region 78506
Tssr78507 8 84995980 to 84995981 1 + TSS region transcription start site region 78507
Tssr78508 8 84995983 to 84995985 2 + TSS region transcription start site region 78508
Tssr78509 8 84997848 to 84997858 10 + TSS region transcription start site region 78509
Cpgi20743 8 84997984 to 84998294 310 CpG island CpG island 20743
Best2 8 85007202 to 85014531 7329 - protein coding gene bestrophin 2
Cpgi20744 8 85007609 to 85008050 441 CpG island CpG island 20744
Cpgi20745 8 85009201 to 85009425 224 CpG island CpG island 20745
Cpgi20746 8 85011066 to 85011844 778 CpG island CpG island 20746
Cpgi20747 8 85013205 to 85013671 466 CpG island CpG island 20747
Asna1 8 85017931 to 85025278 7347 - protein coding gene arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tssr82234 8 85019565 to 85019580 15 - TSS region transcription start site region 82234
Tssr82235 8 85019871 to 85019893 22 - TSS region transcription start site region 82235
Tssr78510 8 85021975 to 85021994 19 + TSS region transcription start site region 78510
Cpgi20748 8 85024831 to 85025246 415 CpG island CpG island 20748
Tssr82236 8 85025231 to 85025238 7 - TSS region transcription start site region 82236
Tssr82237 8 85025268 to 85025296 28 - TSS region transcription start site region 82237
Tssr78511 8 85025640 to 85025649 9 + TSS region transcription start site region 78511
Cpgi20749 8 85026553 to 85027730 1177 CpG island CpG island 20749
Trir 8 85026823 to 85030286 3463 + protein coding gene telomerase RNA component interacting RNase
Tssr78512 8 85026851 to 85026899 48 + TSS region transcription start site region 78512
Cpgi20750 8 85036674 to 85038680 2006 CpG island CpG island 20750
Tssr82238 8 85036678 to 85036734 56 - TSS region transcription start site region 82238
Tssr78513 8 85036886 to 85036902 16 + TSS region transcription start site region 78513
Tssr78514 8 85036906 to 85036925 19 + TSS region transcription start site region 78514
Tnpo2 8 85036915 to 85057583 20668 + protein coding gene transportin 2 (importin 3, karyopherin beta 2b)
Tssr78515 8 85036926 to 85036937 11 + TSS region transcription start site region 78515
Tssr78516 8 85037151 to 85037210 59 + TSS region transcription start site region 78516
Tssr78517 8 85037214 to 85037227 13 + TSS region transcription start site region 78517
Gm25506 8 85050207 to 85050276 69 + snoRNA gene predicted gene, 25506
A230103J11Rik 8 85053160 to 85060460 7300 - lncRNA gene RIKEN cDNA A230103J11 gene
Tssr78518 8 85057222 to 85057268 46 + TSS region transcription start site region 78518
Cpgi20751 8 85059982 to 85060717 735 CpG island CpG island 20751
Fbxw9 8 85060055 to 85067124 7069 + protein coding gene F-box and WD-40 domain protein 9
Tssr78519 8 85060063 to 85060135 72 + TSS region transcription start site region 78519
Tssr2632 8 85060420 to 85060437 17 - TSS region transcription start site region 2632
Tssr82239 8 85060438 to 85060468 30 - TSS region transcription start site region 82239
Mir7070 8 85062086 to 85062171 85 + miRNA gene microRNA 7070
Gm5741 8 85067568 to 85067982 414 - protein coding gene predicted gene 5741